General

@ref: 17522

BacDive-ID: 3933

DSM-Number: 24166

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Branchiibius cervicis DSM 24166 is a mesophilic human pathogen that was isolated from skin of atopic dermatitis patient.

NCBI tax id

• NCBI tax id: 908252
• Matching level: species

strain history

• @ref: 17522
• history: <- J. Tomida, Aichi Gakuin University, Dept. of Microbiology, Nagoya,Japan; PAGU 1247 <- Meiji Pharmaceutical University, Tokyo, Japan

doi: 10.13145/bacdive3933.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Micrococcales
• family: Dermacoccaceae
• genus: Branchiibius
• species: Branchiibius cervicis
• full scientific name: Branchiibius cervicis Tomida et al. 2013

@ref: 17522

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Dermacoccaceae

genus: Branchiibius

species: Branchiibius cervicis

full scientific name: Branchiibius cervicis Tomida et al. 2013

type strain: yes

Culture and growth conditions

culture medium

• @ref: 17522
• name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
• growth: yes
• link: https://mediadive.dsmz.de/medium/92
• composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

• @ref: 17522
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 17522
• sample type: skin of atopic dermatitis patient
• geographic location: Saitama
• country: Japan
• origin.country: JPN
• continent: Asia

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_53367.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_23888;97_29888;98_38211;99_53367&stattab=map
• Last taxonomy: Branchiibius
• 16S sequence: AB594446
• Sequence Identity:
• Total samples: 1843
• soil counts: 151
• aquatic counts: 355
• animal counts: 1282
• plant counts: 55

Safety information

risk assessment

• @ref: 17522
• pathogenicity human: yes, in single cases
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 17522
• description: Branchiibius cervicis gene for 16S ribosomal RNA, partial sequence, strain: PAGU 1247
• accession: AB594446
• length: 1397
• database: ena
• NCBI tax ID: 908252

GC content

• @ref: 17522
• GC-content: 67.6
• method: high performance liquid chromatography (HPLC)

External links

@ref: 17522

culture collection no.: DSM 24166, NRBC 106593, PAGU 1247

straininfo link

• @ref: 73443
• straininfo: 403469

literature

• topic: Phylogeny
• Pubmed-ID: 21940130
• title: Branchiibius cervicis sp. nov., a novel species isolated from patients with atopic dermatitis.
• authors: Tomida J, Sakamoto D, Sugita T, Fujiwara N, Naka T, Hamada M, Morita Y, Kawamura Y
• journal: Syst Appl Microbiol
• DOI: 10.1016/j.syapm.2011.08.003
• year: 2011
• mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification/pathogenicity, Actinomycetales Infections/microbiology, Adolescent, Adult, Base Composition, Cell Wall/chemistry, Chromatography, High Pressure Liquid, DNA, Bacterial/genetics, Dermatitis, Atopic/*microbiology, Fatty Acids/chemistry, Female, Genes, Bacterial, Genes, rRNA, Humans, Male, Neck/microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping, Vitamin K 2/chemistry, Young Adult
• topic2: Pathogenicity

Reference