Name: Deinococcus yunweiensis DSM 17005
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3886

Type strain:

Species: Deinococcus yunweiensis

Culture col. no.: DSM 17005, KCTC 3962, YIM 007, KCTC 3955

Strain history: <- WJ Li, Yunnan Institute of Microbiology, China

NCBI tax ID(s): 367282 (species)

SI-ID 232161

KCTC 3955, DSM 17005, KCTC 3962

Special Collections

Other strains from Deinococcus yunweiensis

Section

Deinococcus yunweiensis DSM 17005 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from contaminated agar plate.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus yunweiensis**
	Full Scientific Name (LPSN)	Deinococcus yunweiensis Zhang et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31791]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31791]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31791]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #31791]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6685]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #6685]

Culture medium growth

[Ref.: #6685]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6685]

Culture medium composition

expand / minimize

[Ref.: #6685]

Culture medium

GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)

[Ref.: #6685]

Culture medium growth

[Ref.: #6685]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6685]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6685]	growth	28 °C
[Ref.: #31791]	growth	10-50 °C
[Ref.: #31791]	optimum	30 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31791]			optimum	7.25
[Ref.: #31791]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31791]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31791]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31791]		NaCl		optimum	0-1	%

[Ref.: #67771]

Observation

quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31791]	arabinose ChEBI	+	carbon source
[Ref.: #31791]	galacturonate ChEBI	+	carbon source
[Ref.: #31791]	glucose ChEBI	+	carbon source
[Ref.: #31791]	malonate ChEBI	+	carbon source
[Ref.: #31791]	maltose ChEBI	+	carbon source
[Ref.: #31791]	mannitol ChEBI	+	carbon source
[Ref.: #31791]	melibiose ChEBI	+	carbon source
[Ref.: #31791]	rhamnose ChEBI	+	carbon source
[Ref.: #31791]	salicin ChEBI	+	carbon source
[Ref.: #31791]	sorbitol ChEBI	+	carbon source
[Ref.: #31791]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31791]	alpha-galactosidase	+	3.2.1.22
[Ref.: #31791]	catalase	+	1.11.1.6
[Ref.: #31791]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31791]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6685]	Sample type/isolated from	contaminated agar plate
[Ref.: #6685]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #6685]	Country	China
[Ref.: #6685]	Country ISO 3 Code	CHN
[Ref.: #6685]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From contaminated plate
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Laboratory	#Lab enrichment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ344634 (>99% sequence identity) for Deinococcus yunweiensis subclade from Microbeatlas

Aquatic Samples	841
Soil Samples	512
Animal Samples	649
Plant Samples	410
Total Samples	2412

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6685]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6685]	Deinococcus yunweiensis strain YIM 007 16S ribosomal RNA gene, partial sequence	DQ344634	1459	GenBank ENA	367282 tax ID

[Ref.: #6685]

GC-content

64.1 mol%

Availability in culture collections External links

[Ref.: #6685]

Culture collection no.

DSM 17005, KCTC 3962, YIM 007, KCTC 3955

[Ref.: #73396]

SI-ID 232161

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus rufus sp. nov., isolated from soil near an iron factory.	Wang Q, Song Y, Choi L, Liu H, Wang G, Li M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002724	2018	*
Phylogeny	Description of Deinococcus populi sp. nov. from the trunk surface of a Japanese aspen tree.	Li J, Kudo C, Tonouchi A	Arch Microbiol	10.1007/s00203-017-1443-5	2017	*
Phylogeny	Deinococcus yunweiensis sp. nov., a gamma- and UV-radiation-resistant bacterium from China.	Zhang YQ, Sun CH, Li WJ, Yu LY, Zhou JQ, Zhang YQ, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.64292-0	2007	*

References

#6685

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17005

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31791

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28062 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73396

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232161.1 )

#28062

IJSEM 370 2007 ( DOI 10.1099/ijs.0.64292-0 , PubMed 17267981 )

* These data were automatically processed and therefore are not curated

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