Name: Deinococcus ficus CC-FR2-10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3885

Type strain:

Species: Deinococcus ficus

Strain Designation: CC-FR2-10

Culture col. no.: DSM 19119, CCUG 51391, CIP 108832, CCUG 53391

Strain history: CIP <- 2005, P. Kämpfer, Justus-Liebig Univ., Giessen, Germany: strain CC-FR2-10

NCBI tax ID(s): 1121379 (strain), 317577 (species)

SI-ID 343907

CIP 108832, CCUG 51391, DSM 19119, BCRC 17568, CCRC 17568

Special Collections

Other strains from Deinococcus ficus

Section

When using BacDive for research please cite our paper

Deinococcus ficus CC-FR2-10 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from rhizosphere of Ficus religiosa.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus ficus**
	Full Scientific Name (LPSN)	Deinococcus ficus Lai et al. 2006

Synonym

Deinococcus mumbaiensis

Information on morphological and physiological properties Morphology

[Ref.: #31666]	Gram stain	positive
[Ref.: #119344]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %97.5

[Ref.: #31666]	Cell shape	rod-shaped
[Ref.: #119344]	Cell shape	rod-shaped

[Ref.: #31666]	Motility	no
[Ref.: #119344]	Motility	no

[Ref.: #119344]

Hemolysis ability

[Ref.: #31666]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7918]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7918]

Culture medium growth

[Ref.: #7918]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7918]

Culture medium composition

expand / minimize

[Ref.: #38331]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38331]

Culture medium growth

[Ref.: #38331]

Culture medium composition

expand / minimize

[Ref.: #119344]

Culture medium

CIP Medium 72

[Ref.: #119344]

Culture medium growth

[Ref.: #119344]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7918]	growth	28 °C
[Ref.: #31666]	growth	10-40 °C
[Ref.: #31666]	optimum	37 °C
[Ref.: #38331]	growth	30 °C
[Ref.: #59177]	growth	22-37 °C

	pH	Kind of pH		pH
[Ref.: #31666]			optimum	7
[Ref.: #31666]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31666]	Oxygen tolerance	aerobe
[Ref.: #59177]	Oxygen tolerance	aerobe
[Ref.: #119344]	Oxygen tolerance	obligate aerobe

[Ref.: #31666]

Ability of spore formation

[Ref.: #31666]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31666]	acetate ChEBI	+	carbon source
[Ref.: #31666]	arabinose ChEBI	+	carbon source
[Ref.: #31666]	dextrin ChEBI	+	carbon source
[Ref.: #31666]	fructose ChEBI	+	carbon source
[Ref.: #31666]	fucose ChEBI	+	carbon source
[Ref.: #31666]	galactose ChEBI	+	carbon source
[Ref.: #31666]	gluconate ChEBI	+	carbon source
[Ref.: #31666]	glucose ChEBI	+	carbon source
[Ref.: #31666]	lactate ChEBI	+	carbon source
[Ref.: #31666]	lactose ChEBI	+	carbon source
[Ref.: #31666]	malate ChEBI	+	carbon source
[Ref.: #31666]	maltose ChEBI	+	carbon source
[Ref.: #31666]	mannitol ChEBI	+	carbon source
[Ref.: #31666]	mannose ChEBI	+	carbon source
[Ref.: #31666]	melibiose ChEBI	+	carbon source
[Ref.: #31666]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #31666]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #119344]	nitrate ChEBI	-	reduction
[Ref.: #119344]	nitrite ChEBI	-	reduction
[Ref.: #31666]	propionate ChEBI	+	carbon source
[Ref.: #31666]	pyruvate ChEBI	+	carbon source
[Ref.: #31666]	raffinose ChEBI	+	carbon source
[Ref.: #31666]	rhamnose ChEBI	+	carbon source
[Ref.: #31666]	ribose ChEBI	+	carbon source
[Ref.: #31666]	serine ChEBI	+	carbon source
[Ref.: #31666]	sorbitol ChEBI	+	carbon source
[Ref.: #31666]	succinate ChEBI	+	carbon source
[Ref.: #31666]	sucrose ChEBI	+	carbon source
[Ref.: #31666]	trehalose ChEBI	+	carbon source
[Ref.: #31666]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119344]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119344]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119344]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31666]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119344]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119344]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119344]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119344]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119344]	11494	-	+	+	+	-	+	+	-	+	+	+	+	-	+	-	+	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	90	9 of 10
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	purine metabolism	84.04	79 of 94
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	isoprenoid biosynthesis	73.08	19 of 26
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	oxidative phosphorylation	67.03	61 of 91
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	nitrate assimilation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	lysine metabolism	57.14	24 of 42
[Ref.: #66794]	cardiolipin biosynthesis	57.14	4 of 7
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	methionine metabolism	53.85	14 of 26
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	vitamin B12 metabolism	50	17 of 34
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	lipid metabolism	48.39	15 of 31
[Ref.: #66794]	degradation of sugar alcohols	43.75	7 of 16
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	carotenoid biosynthesis	36.36	8 of 22
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	chlorophyll metabolism	33.33	6 of 18
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	degradation of sugar acids	32	8 of 25
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7918]	Sample type/isolated from	rhizosphere of Ficus religiosa
[Ref.: #7918]	Host species	Ficus religiosa
[Ref.: #7918]	Country	Taiwan, Province of China
[Ref.: #7918]	Country ISO 3 Code	TWN
[Ref.: #7918]	Continent	Asia

[Ref.: #59177]	Sample type/isolated from	Rhizosphere of a fig-tree (Ficus religiosa L.)
[Ref.: #59177]	Country	Taiwan, Province of China
[Ref.: #59177]	Country ISO 3 Code	TWN
[Ref.: #59177]	Continent	Asia

[Ref.: #119344]	Sample type/isolated from	Environment, Rhizosphere of Ficius religiosa L.
[Ref.: #119344]	Country	Taiwan, Province of China
[Ref.: #119344]	Country ISO 3 Code	TWN
[Ref.: #119344]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY941086 (>99% sequence identity) for Deinococcus ficus subclade from Microbeatlas

Aquatic Samples	386
Soil Samples	240
Animal Samples	1199
Plant Samples	60
Total Samples	1885

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7918]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119344]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7918]	Deinococcus ficus strain CC-FR2-10 16S ribosomal RNA gene, partial sequence	AY941086	1453	GenBank ENA	317577 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Deinococcus ficus CC-FR2-10	GCA_003444775	complete	GenBank ENA	317577 tax ID	*
[Ref.: #66792]	Deinococcus ficus DSM 19119	GCA_000430865	scaffold	GenBank ENA	1121379 tax ID	*
[Ref.: #66792]	Deinococcus ficus DSM 19119	1121379.3	wgs	PATRIC	1121379 tax ID	*
[Ref.: #66792]	Deinococcus ficus DSM 19119	2524614857	draft	JGI IMG/M	1121379 tax ID	*
[Ref.: #66792]	Deinococcus ficus CC-FR2-10	2739367875	complete	JGI IMG/M	317577 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Deinococcus ficus CC-FR2-10 NCBI: GCA_003444775.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	56.334	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	87.928	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	79.067	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	72.583	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	87.126	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	68.773	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Deinococcus ficus CC-FR2-10 NCBI: GCA_003444775
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	74.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	97.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	86.7
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	62.6

Availability in culture collections External links

[Ref.: #7918]

Culture collection no.

DSM 19119, CCUG 51391, CIP 108832, CCUG 53391

[Ref.: #73395]

SI-ID 343907

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus terrigena sp. nov., a novel member of the family Deinococcaceae.	Ten LN, Cho H, Cho YJ, Jung HY	Antonie Van Leeuwenhoek	10.1007/s10482-018-1167-9	2018	*
Phylogeny	Deinococcus metalli sp. nov., isolated from an abandoned lead-zinc mine.	Feng GD, Wang YH, Li YX, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000439	2015	*
Phylogeny	Deinococcus antarcticus sp. nov., isolated from soil.	Dong N, Li HR, Yuan M, Zhang XH, Yu Y	Int J Syst Evol Microbiol	10.1099/ijs.0.066324-0	2014	*
Phylogeny	Deinococcus enclensis sp. nov., isolated from a marine sediment sample.	Thorat MN, Mawlankar R, Sonalkar VV, Venkata Ramana V, Joseph N, Shouche YS, Dastager SG	Antonie Van Leeuwenhoek	10.1007/s10482-014-0311-4	2014	*
Phylogeny	Deinococcus ficus sp. nov., isolated from the rhizosphere of Ficus religiosa L.	Lai WA, Kampfer P, Arun AB, Shen FT, Huber B, Rekha PD, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.64007-0	2006	*
Phylogeny	Deinococcus mumbaiensis Shashidhar and Bandekar 2006 is a later heterotypic synonym of Deinococcus ficus Lai et al. 2006.	Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.002824-0	2009	*
	Influence of the C-Terminal Tail of RecA Proteins from Alkaline pH-Resistant Bacterium Deinococcus Ficus.	Fan HF, Su S, Kuo YA, Chen CJ	ACS Omega	10.1021/acsomega.0c02865	2020	*

References

#7918

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19119

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31666

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27946 (see below)

#38331 ; Curators of the CIP;
#59177 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51391

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73395

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343907.1 )

#119344 Collection of Institut Pasteur ; Curators of the CIP; CIP 108832

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27946

IJSEM 787 2006 ( DOI 10.1099/ijs.0.64007-0 , PubMed 16585695 )

* These data were automatically processed and therefore are not curated

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