Name: Deinococcus saxicola AA-1444
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3865

Type strain:

Species: Deinococcus saxicola

Strain Designation: AA-1444

Culture col. no.: DSM 15974, CIP 109040, NRRL B-41043

Strain history: CIP <- 2005, DSMZ <- P. Hirsch, C. Albrechts Univ., Kiel, Germany: strain AA-1444

NCBI tax ID(s): 249406 (species)

SI-ID 215489

DSM 15974, NRRL B-41043, CIP 109040

Section

Deinococcus saxicola AA-1444 is a psychrophilic, Gram-positive, coccus-shaped bacterium that was isolated from sandstone .

coccus-shaped
Gram-positive
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus saxicola**
	Full Scientific Name (LPSN)	Deinococcus saxicola Hirsch et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #122496]	Gram stain	positive

[Ref.: #122496]	Cell shape	coccus-shaped

[Ref.: #122496]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6213]

Culture medium

PYGV AGAR (DSMZ Medium 621)

[Ref.: #6213]

Culture medium growth

[Ref.: #6213]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6213]

Culture medium composition

expand / minimize

[Ref.: #122496]

Culture medium

CIP Medium 331

[Ref.: #122496]

Culture medium growth

[Ref.: #122496]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #6213]			growth	15 °C

[Ref.: #6213]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6213]	Sample type/isolated from	sandstone (pH 7.0)
[Ref.: #6213]	Geographic location (country and/or sea, region)	McMurdo Dry Valleys
[Ref.: #6213]	Continent	Australia and Oceania

[Ref.: #122496]	Sample type/isolated from	Environment, Sandstone
[Ref.: #122496]	Geographic location (country and/or sea, region)	McMurdo dry valleys
[Ref.: #122496]	Country	Antarctica
[Ref.: #122496]	Country ISO 3 Code	ATA
[Ref.: #122496]	Continent	Antarctica
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ585984 (>99% sequence identity) for Deinococcus saxicola subclade from Microbeatlas

Aquatic Samples	10
Soil Samples	94
Animal Samples	21
Plant Samples	1
Total Samples	126

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6213]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122496]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6213]	Deinococcus sp. AA1444 16S rRNA gene, strain AA1444	AJ585984	1489	ENA	249406 tax ID

[Ref.: #6213]

GC-content

59.5 mol%

Availability in culture collections External links

[Ref.: #6213]

Culture collection no.

DSM 15974, CIP 109040, NRRL B-41043

[Ref.: #73375]

SI-ID 215489

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus rubrus sp. nov., a Bacterium Isolated from Antarctic Coastal Sea Water.	Srinivasan S, Lim S, Lim JH, Jung HY, Kim MK	J Microbiol Biotechnol	10.4014/jmb.1609.09002	2017	*
Phylogeny	Deinococcus humi sp. nov., isolated from soil.	Srinivasan S, Lee JJ, Lim S, Joe M, Kim MK	Int J Syst Evol Microbiol	10.1099/ijs.0.037234-0	2012	*
Phylogeny	Deinococcus aerolatus sp. nov. and Deinococcus aerophilus sp. nov., isolated from air samples.	Yoo SH, Weon HY, Kim SJ, Kim YS, Kim BY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.016030-0	2009	*
Phylogeny	Deinococcus frigens sp. nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica.	Hirsch P, Gallikowski CA, Siebert J, Peissl K, Kroppenstedt R, Schumann P, Stackebrandt E, Anderson R	Syst Appl Microbiol	10.1078/0723202042370008	2004	*

References

#6213

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15974

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73375

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215489.1 )

#122496 Collection of Institut Pasteur ; Curators of the CIP; CIP 109040
* These data were automatically processed and therefore are not curated

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