Strain identifier
BacDive ID: 3865
Type strain: 
Species: Deinococcus saxicola
Strain Designation: AA-1444
Strain history: CIP <- 2005, DSMZ <- P. Hirsch, C. Albrechts Univ., Kiel, Germany: strain AA-1444
NCBI tax ID(s): 249406 (species)
version 8.1 (current version)
General
@ref: 6213
BacDive-ID: 3865
DSM-Number: 15974
keywords: 16S sequence, Bacteria, psychrophilic, Gram-positive, coccus-shaped
description: Deinococcus saxicola AA-1444 is a psychrophilic, Gram-positive, coccus-shaped bacterium that was isolated from sandstone .
NCBI tax id
- NCBI tax id: 249406
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6213 | <- P. Hirsch; AA-1444 |
| 122496 | CIP <- 2005, DSMZ <- P. Hirsch, C. Albrechts Univ., Kiel, Germany: strain AA-1444 |
doi: 10.13145/bacdive3865.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus saxicola
- full scientific name: Deinococcus saxicola Hirsch et al. 2006
@ref: 6213
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus saxicola
full scientific name: Deinococcus saxicola Hirsch et al. 2006
strain designation: AA-1444
type strain: yes
Morphology
cell morphology
- @ref: 122496
- gram stain: positive
- cell shape: coccus-shaped
- motility: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 6213 | PYGV AGAR (DSMZ Medium 621) | yes | https://mediadive.dsmz.de/medium/621 | Name: PYGV AGAR (DSMZ Medium 621) Composition: Agar 15.0 g/l MgSO4 x 7 H2O 0.625264 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.210526 g/l CaCl2 x 2 H2O 0.0703158 g/l FeSO4 x 7 H2O 0.00208422 g/l Na2MoO4 x 2 H2O 0.000266736 g/l Pyridoxine hydrochloride 0.0001 g/l p-Aminobenzoic acid 5e-05 g/l D-Calcium pantothenate 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavine 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Metall salt sol. 44 Distilled water |
| 122496 | CIP Medium 331 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=331 |
culture temp
- @ref: 6213
- growth: positive
- type: growth
- temperature: 15
- range: psychrophilic
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | continent | country | origin.country |
|---|---|---|---|---|---|
| 6213 | sandstone (pH 7.0) | McMurdo Dry Valleys | Australia and Oceania | ||
| 122496 | Environment, Sandstone | McMurdo dry valleys | Antarctica | Antarctica | ATA |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Geologic
taxonmaps
- @ref: 69479
- File name: preview.99_95530.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_2085;97_2512;98_65547;99_95530&stattab=map
- Last taxonomy: Deinococcus saxicola subclade
- 16S sequence: AJ585984
- Sequence Identity:
- Total samples: 126
- soil counts: 94
- aquatic counts: 10
- animal counts: 21
- plant counts: 1
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 6213 | 1 | Risk group (German classification) |
| 122496 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 6213
- description: Deinococcus sp. AA1444 16S rRNA gene, strain AA1444
- accession: AJ585984
- length: 1489
- database: ena
- NCBI tax ID: 249406
GC content
- @ref: 6213
- GC-content: 59.5
External links
@ref: 6213
culture collection no.: DSM 15974, CIP 109040, NRRL B-41043
straininfo link
- @ref: 73375
- straininfo: 215489
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15612620 | Deinococcus frigens sp. nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica. | Hirsch P, Gallikowski CA, Siebert J, Peissl K, Kroppenstedt R, Schumann P, Stackebrandt E, Anderson R | Syst Appl Microbiol | 10.1078/0723202042370008 | 2004 | Anaerobiosis, Antarctic Regions, Cell Wall/chemistry, Culture Media/chemistry, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Deinococcus/*classification/*isolation & purification/physiology/radiation effects, Genes, rRNA, Gentian Violet, Hydrogen-Ion Concentration, Lipids/analysis/isolation & purification, Molecular Sequence Data, Movement, Osmotic Pressure, Phenazines, Phylogeny, Pigments, Biological, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Temperature, Ultraviolet Rays | Enzymology |
| Phylogeny | 19667390 | Deinococcus aerolatus sp. nov. and Deinococcus aerophilus sp. nov., isolated from air samples. | Yoo SH, Weon HY, Kim SJ, Kim YS, Kim BY, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijs.0.016030-0 | 2009 | *Air Microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Deinococcus/*classification/genetics/*isolation & purification/physiology, Fatty Acids/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 22228662 | Deinococcus humi sp. nov., isolated from soil. | Srinivasan S, Lee JJ, Lim S, Joe M, Kim MK | Int J Syst Evol Microbiol | 10.1099/ijs.0.037234-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Deinococcus/*classification/genetics/isolation & purification, Fatty Acids/analysis, Gamma Rays, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Phylogeny | 27974735 | Deinococcus rubrus sp. nov., a Bacterium Isolated from Antarctic Coastal Sea Water. | Srinivasan S, Lim S, Lim JH, Jung HY, Kim MK | J Microbiol Biotechnol | 10.4014/jmb.1609.09002 | 2017 | Antarctic Regions, Bacteria/*classification/genetics/isolation & purification/metabolism, DNA Barcoding, Taxonomic, Deinococcus/*classification/genetics/isolation & purification/metabolism, Fatty Acids/metabolism, Genes, Bacterial, Genome, Bacterial, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, *Water Microbiology | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6213 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15974) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15974 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 73375 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID215489.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 122496 | Curators of the CIP | Collection of Institut Pasteur (CIP 109040) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109040 |