Name: Deferribacter abyssi JR
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3844

Type strain:

Species: Deferribacter abyssi

Strain Designation: JR

Culture col. no.: DSM 14873, JCM 11955

Strain history: M. Miroshnichenko strain JR.

NCBI tax ID(s): 213806 (species)

SI-ID 127987

DSM 14873, JCM 11955

Other strains from Deferribacter abyssi

D. abyssi DR, DSM 14928

Section

Deferribacter abyssi JR is an anaerobe, thermophilic bacterium that was isolated from deep-sea hot vent, 2400 m depth.

anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deferribacterota*
	Class	*Deferribacteres*
	Order	*Deferribacterales*
	Family	*Deferribacteraceae*
	Genus	*Deferribacter*
	Species	**Deferribacter abyssi**
	Full Scientific Name (LPSN)	Deferribacter abyssi Miroshnichenko et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5590]

Culture medium

DEFERRIBACTER MEDIUM (DSMZ Medium 935)

[Ref.: #5590]

Culture medium growth

[Ref.: #5590]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5590]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5590]			growth	60 °C
[Ref.: #67770]			growth	60 °C

[Ref.: #5590]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5590]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5590]	Sample type/isolated from	deep-sea hot vent, 2400 m depth
[Ref.: #5590]	Geographic location (country and/or sea, region)	Mid-Atlantic Ridge, Rainbow vent field
[Ref.: #5590]	Country	International waters
[Ref.: #5590]	Geographic location	36.2667°/-33.9000°

[Ref.: #67770]	Sample type/isolated from	Rainbow hydrothermal vent field of the Mid-Atlantic Ridge
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ515882 (>99% sequence identity) for Deferribacter abyssi subclade from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5590]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5590]	Deferribacter sp. JR 16S rRNA gene, strain JR	AJ515882	1519	ENA	213806 tax ID

[Ref.: #5590]

GC-content

30.8 mol%

Availability in culture collections External links

[Ref.: #5590]

Culture collection no.

DSM 14873, JCM 11955

[Ref.: #73354]

SI-ID 127987

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deferribacter abyssi sp. nov., an anaerobic thermophile from deep-sea hydrothermal vents of the Mid-Atlantic Ridge.	Miroshnichenko ML, Slobodkin AI, Kostrikina NA, L'Haridon S, Nercessian O, Spring S, Stackebrandt E, Bonch-Osmolovskaya EA, Jeanthon C	Int J Syst Evol Microbiol	10.1099/ijs.0.02673-0	2003	*

References

#5590

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14873

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73354

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127987.1 )

* These data were automatically processed and therefore are not curated

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