Adhaeribacter aquaticus (DSM 16391, NCIMB 14008, MBRG1.5)

Name: Adhaeribacter aquaticus (DSM 16391, NCIMB 14008, MBRG1.5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3764

Type strain

Strain Designation MBRG1.5

Culture col. no. DSM 16391 NCIMB 14008 MBRG1.5

NCBI tax ID(s) 926549 299567

Special Collections DSMZ Literature strains

History <- P. Gilbert; MBRG1.5 <- A. H. Rickard

Links

Adhaeribacter aquaticus MBRG1.5 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater biofilm.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 137991

DSM 16391,NCIMB 14008

@ref 20215

Last LPSN update 2026-02-09 11:18:34

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Adhaeribacter

Species Adhaeribacter aquaticus

Full scientific name Adhaeribacter aquaticus Rickard et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31334	negative	3.45 µm	1.3 µm	rod-shaped
125438	negative				96.835
125439	negative				99.7

Pigmentation

31334

Productionyes

Multimedia

@ref:	66793
multimedia content:	EM_DSM_16391_1.jpg
multimedia.multimedia content:	EM_DSM_16391_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6424	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6424	positive	growth	30
31334	positive	growth	04-37
31334	positive	optimum	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31334	aerobe
125439	obligate aerobe	97.1

Spore formation

@ref	Spore formation	Confidence
125439		98.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31334	NaCl	positive	growth	<4 %
31334	NaCl	positive	optimum	2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31334	16449 ChEBI	alanine	+	carbon source
31334	22599 ChEBI	arabinose	+	carbon source
31334	28757 ChEBI	fructose	+	carbon source
31334	24265 ChEBI	gluconate	+	carbon source
31334	17234 ChEBI	glucose	+	carbon source
31334	15428 ChEBI	glycine	+	carbon source
31334	27570 ChEBI	histidine	+	carbon source
31334	25017 ChEBI	leucine	+	carbon source
31334	506227 ChEBI	N-acetylglucosamine	+	carbon source
31334	18257 ChEBI	ornithine	+	carbon source
31334	26271 ChEBI	proline	+	carbon source
31334	15361 ChEBI	pyruvate	+	carbon source
31334	15963 ChEBI	ribitol	+	carbon source
31334	33942 ChEBI	ribose	+	carbon source
31334	17992 ChEBI	sucrose	+	carbon source
31334	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31334	catalase	+	1.11.1.6
31334	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Biofilm	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6424	freshwater biofilm	Manchester	United Kingdom	GBR	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6424	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM47336v1 assembly for Adhaeribacter aquaticus DSM 16391	scaffold	GCA_000473365	926549.3	2511231049	926549	75.84

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6424	Adhaeribacter aquaticus 16S rRNA gene, type strain MBRG1.5	AJ626894	1445		299567

GC content

@ref	GC-content (mol%)
6424	40.0
31334	40

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Adhaeribacter aquaticus DSM 16391
NCBI: GCA_000473365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.40	no
125439	motility	BacteriaNetⓘ	no	61.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Adhaeribacter aquaticus DSM 16391 DSM 16391
NCBI: GCA_000473365.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.84	yes
125438	anaerobic	anaerobicⓘ	no	97.91	yes
125438	aerobic	aerobicⓘ	yes	87.19	yes
125438	spore-forming	spore-formingⓘ	no	86.19	no
125438	thermophilic	thermophileⓘ	no	95.62	yes
125438	flagellated	motile2+ⓘ	no	85.53	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides koreensis sp. nov., Nocardioides bigeumensis sp. nov. and Nocardioides agariphilus sp. nov., isolated from soil from Bigeum Island, Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.65566-0	2008
Enzymology	Nocardioides islandiensis sp. nov., isolated from soil in Bigeum Island Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ.	Antonie Van Leeuwenhoek	10.1007/s10482-007-9217-8	2008
Phylogeny	Adhaeribacter terreus sp. nov., isolated from forest soil.	Zhang JY, Liu XY, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.004796-0	2009
Phylogeny	Effluviibacter roseus gen. nov., sp. nov., isolated from muddy water, belonging to the family "Flexibacteraceae".	Suresh K, Mayilraj S, Chakrabarti T	Int J Syst Evol Microbiol	10.1099/ijs.0.64144-0	2006
Phylogeny	Adhaeribacter aquaticus gen. nov., sp. nov., a Gram-negative isolate from a potable water biofilm.	Rickard AH, Stead AT, O'May GA, Lindsay S, Banner M, Handley PS, Gilbert P	Int J Syst Evol Microbiol	10.1099/ijs.0.63337-0	2005

References

#6424	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16391
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27648	IJSEM 821 2005 ( DOI 10.1099/ijs.0.63337-0 , PubMed 15774669 )
#31334	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27648
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Adhaeribacter aquaticus (DSM 16391, NCIMB 14008, MBRG1.5)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000473365

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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