Strain identifier

BacDive ID: 3764

Type strain: Yes

Species: Adhaeribacter aquaticus

Strain Designation: MBRG1.5

Strain history: <- P. Gilbert; MBRG1.5 <- A. H. Rickard

NCBI tax ID(s): 926549 (strain), 299567 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6424

BacDive-ID: 3764

DSM-Number: 16391

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Adhaeribacter aquaticus MBRG1.5 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater biofilm.

NCBI tax id

NCBI tax idMatching level
299567species
926549strain

strain history

  • @ref: 6424
  • history: <- P. Gilbert; MBRG1.5 <- A. H. Rickard

doi: 10.13145/bacdive3764.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Hymenobacteraceae
  • genus: Adhaeribacter
  • species: Adhaeribacter aquaticus
  • full scientific name: Adhaeribacter aquaticus Rickard et al. 2005

@ref: 6424

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Hymenobacteraceae

genus: Adhaeribacter

species: Adhaeribacter aquaticus

full scientific name: Adhaeribacter aquaticus Rickard et al. 2005

strain designation: MBRG1.5

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31334negative3.45 µm1.3 µmrod-shapedno
69480negative99.998

pigmentation

  • @ref: 31334
  • production: yes

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_16391_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 6424
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6424positivegrowth30mesophilic
31334positivegrowth04-37
31334positiveoptimum30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 31334
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.996

halophily

@refsaltgrowthtested relationconcentration
31334NaClpositivegrowth<4 %
31334NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3133415963ribitol+carbon source
3133416449alanine+carbon source
3133422599arabinose+carbon source
3133428757fructose+carbon source
3133424265gluconate+carbon source
3133417234glucose+carbon source
3133415428glycine+carbon source
3133427570histidine+carbon source
3133425017leucine+carbon source
31334506227N-acetylglucosamine+carbon source
3133418257ornithine+carbon source
3133426271proline+carbon source
3133415361pyruvate+carbon source
3133433942ribose+carbon source
3133417992sucrose+carbon source
3133427082trehalose+carbon source

enzymes

@refvalueactivityec
31334catalase+1.11.1.6
31334cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 6424
  • sample type: freshwater biofilm
  • geographic location: Manchester
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Biofilm

Safety information

risk assessment

  • @ref: 6424
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6424
  • description: Adhaeribacter aquaticus 16S rRNA gene, type strain MBRG1.5
  • accession: AJ626894
  • length: 1445
  • database: ena
  • NCBI tax ID: 299567

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Adhaeribacter aquaticus DSM 16391GCA_000473365scaffoldncbi926549
66792Adhaeribacter aquaticus DSM 16391926549.3wgspatric926549
66792Adhaeribacter aquaticus DSM 163912511231049draftimg926549

GC content

@refGC-content
642440.0
3133440

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91no
flagellatedno96.212yes
gram-positiveno97.192yes
anaerobicno99.633yes
aerobicyes92.7yes
halophileno91.564no
spore-formingno96.493no
thermophileno95.788yes
glucose-utilyes90.623yes
glucose-fermentno87.749no

External links

@ref: 6424

culture collection no.: DSM 16391, NCIMB 14008

straininfo link

  • @ref: 73276
  • straininfo: 137991

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15774669Adhaeribacter aquaticus gen. nov., sp. nov., a Gram-negative isolate from a potable water biofilm.Rickard AH, Stead AT, O'May GA, Lindsay S, Banner M, Handley PS, Gilbert PInt J Syst Evol Microbiol10.1099/ijs.0.63337-02005Base Composition, Biofilms/*growth & development, Cytophagaceae/*classification/genetics/growth & development/isolation & purification, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Drinking, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny16825654Effluviibacter roseus gen. nov., sp. nov., isolated from muddy water, belonging to the family "Flexibacteraceae".Suresh K, Mayilraj S, Chakrabarti TInt J Syst Evol Microbiol10.1099/ijs.0.64144-02006Aerobiosis, Amino Acids/metabolism, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Cytophagaceae/*classification/cytology/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Genes, rRNA, Gentian Violet, Molecular Sequence Data, Phenazines, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Water MicrobiologyMetabolism
Phylogeny19542137Adhaeribacter terreus sp. nov., isolated from forest soil.Zhang JY, Liu XY, Liu SJInt J Syst Evol Microbiol10.1099/ijs.0.004796-02009Bacterial Typing Techniques, Base Composition, China, Cytophagaceae/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, *TreesGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
6424Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16391)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16391
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31334Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2764828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life28604660 35: 676-683 2017
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73276Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID137991.1StrainInfo: A central database for resolving microbial strain identifiers