Name: Stigmatella hybrida Sg h20
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3697

Type strain:

Species: Stigmatella hybrida

Strain Designation: Sg h20

Culture col. no.: DSM 14722, CIP 109130, JCM 12640, Sg h20

Strain history: CIP <- 2006, DSMZ <- H. Reichenbach, GBF, Braunschweig, Germany: strain Sg h20

NCBI tax ID(s): 394097 (species)

SI-ID 293885

DSM 14722, CIP 109130, JCM 12640

Special Collections

Other strains from Stigmatella hybrida

Section

Stigmatella hybrida Sg h20 is a Gram-negative bacterium that builds a fruiting body and was isolated from soil with decaying plant material.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Archangiaceae*
	Genus	*Stigmatella*
	Species	**Stigmatella hybrida**
	Full Scientific Name (LPSN)	Stigmatella hybrida Reichenbach 2007

Information on morphological and physiological properties Morphology

[Ref.: #119995]	Gram stain	negative

[Ref.: #119995]	Cell shape	rod-shaped

[Ref.: #119995]	Motility	no

[Ref.: #18281]	Multicellular complex forming ability	yes *
[Ref.: #18281]	Multicellular complex name	fruiting body *

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5507]

Culture medium

AGAR WITH E. COLI AS FEED (DSMZ Medium 942)

[Ref.: #5507]

Culture medium growth

[Ref.: #5507]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5507]

Culture medium composition

expand / minimize

[Ref.: #5507]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

[Ref.: #5507]

Culture medium growth

[Ref.: #5507]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5507]

Culture medium composition

expand / minimize

[Ref.: #119995]

Culture medium

CIP Medium 684

[Ref.: #119995]

Culture medium growth

[Ref.: #119995]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #5507]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5507]	Sample type/isolated from	soil with decaying plant material
[Ref.: #5507]	Geographic location (country and/or sea, region)	Rhodos
[Ref.: #5507]	Country	Greece
[Ref.: #5507]	Country ISO 3 Code	GRC
[Ref.: #5507]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil with plant residues
[Ref.: #67770]	Country	Greece
[Ref.: #67770]	Country ISO 3 Code	GRC
[Ref.: #67770]	Continent	Europe

[Ref.: #119995]	Sample type/isolated from	Environment, Soil with decaying plant material
[Ref.: #119995]	Geographic location (country and/or sea, region)	Rhodos
[Ref.: #119995]	Country	Greece
[Ref.: #119995]	Country ISO 3 Code	GRC
[Ref.: #119995]	Continent	Europe
[Ref.: #119995]	Isolation date	2000
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Decomposing plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ768129 (>99% sequence identity) for Stigmatella from Microbeatlas

Aquatic Samples	2171
Soil Samples	13615
Animal Samples	1422
Plant Samples	2120
Total Samples	19328

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5507]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119995]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5507]	Stigmatella hybrida strain DSM 14722 16S ribosomal RNA gene, partial sequence	DQ768129	1502	GenBank ENA	394097 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stigmatella hybrida DSM 14722	GCA_020103775	contig	GenBank ENA	394097 tax ID	*
[Ref.: #66792]	Stigmatella hybrida strain DSM 14722	394097.3	wgs	PATRIC	394097 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Stigmatella hybrida strain DSM 14722 PATRIC: 394097.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	52	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Stigmatella hybrida strain DSM 14722 PATRIC: 394097.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	89.976	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.905	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	73.832	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.176	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.739	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	67.466	no

Availability in culture collections External links

[Ref.: #5507]

Culture collection no.

DSM 14722, CIP 109130, JCM 12640, Sg h20

[Ref.: #73209]

SI-ID 293885

References

#5507

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14722

#18281

Reichenbach, H.: Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ . Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73209

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293885.1 )

#119995 Collection of Institut Pasteur ; Curators of the CIP; CIP 109130
* These data were automatically processed and therefore are not curated

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Stigmatella hybrida strain DSM 14722

Stigmatella hybrida strain DSM 14722

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