Stigmatella hybrida (DSM 14722, CIP 109130, JCM 12640)

Name: Stigmatella hybrida (DSM 14722, CIP 109130, JCM 12640)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3697

Type strain

Strain Designation Sg h20

Culture col. no. DSM 14722 CIP 109130 JCM 12640 Sg h20

NCBI tax ID(s) 394097

Special Collections DSMZ JCM CIP Reichenbach collection

History DSMZ <- H. Reichenbach; Sg h20 JCM <-- DSM 14722 <-- H. Reichenbach Sg h20. CIP <- 2006, DSMZ <- H. Reichenbach, GBF, Braunschweig, Germany: strain Sg h20

Links

Stigmatella hybrida Sg h20 is a Gram-negative, rod-shaped bacterium that builds a fruiting body and was isolated from soil with decaying plant material.

Gram-negative rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 293885

DSM 14722,CIP 109130,JCM 12640

@ref 20215

Last LPSN update 2026-05-29 08:25:46

Domain Bacteria

Phylum Pseudomonadota

Class Deltaproteobacteria

Order Myxococcales

Family Archangiaceae

Genus Stigmatella

Species Stigmatella hybrida

Full scientific name Stigmatella hybrida Reichenbach 2007

BacDive ID	Other strains from Stigmatella hybrida (16)	Type strain
3696	S. hybrida Sg h8, DSM 14737
3698	S. hybrida Sg h23, DSM 53746
3699	S. hybrida Sg h24, DSM 53747
3700	S. hybrida Sg h15, DSM 53756
3701	S. hybrida Sg h17, DSM 53752
3702	S. hybrida Sg h11, DSM 53755
3703	S. hybrida Sg h19, DSM 53793
3704	S. hybrida Sg h16, DSM 53794
3705	S. hybrida Sg h12, DSM 53790
3706	S. hybrida Sg h14, DSM 53791
3707	S. hybrida Sg h18, DSM 53792
20201	S. hybrida Sg h3,
20780	S. hybrida Sg h22,
20781	S. hybrida Sg h21,
20798	S. hybrida Sg h13,
20801	S. hybrida Sg h15,

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
119995	negative	rod-shaped

Multicellular morphology

@ref	Forms multicellular complex	Complex name
18281		fruiting body

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5507	AGAR WITH E. COLI AS FEED (DSMZ Medium 942)	Medium recipe at MediaDive	Name: AGAR WITH E. COLI AS FEED (DSMZ Medium 942) Composition: Agar 15.0 g/l CaCl2 x 2 H2O 1.0 g/l Distilled water
5507	VY/2 AGAR (DSMZ Medium 9)	Medium recipe at MediaDive	Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
119995	CIP Medium 684	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5507	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	94.109

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Decomposing plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
5507	soil with decaying plant material	Rhodos	Greece	GRC	Europe
67770	Soil with plant residues		Greece	GRC	Europe
119995	Environment, Soil with decaying plant material	Rhodos	Greece	GRC	Europe	2000

Taxonmaps

69479

Global distribution of 16S sequence DQ768129 (>99% sequence identity) for Stigmatella from Microbeatlas

Aquatic Samples	2171
Soil Samples	13615
Animal Samples	1422
Plant Samples	2120
Total Samples	19328

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5507	1	Risk group (German classification) According to TRBA 466
119995	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2010377v1 assembly for Stigmatella hybrida DSM 14722	contig	GCA_020103775	394097.3	2977344546	394097	61.42

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5507	Stigmatella hybrida strain DSM 14722 16S ribosomal RNA gene, partial sequence	DQ768129	1502		394097

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2010377v1 assembly for Stigmatella hybrida DSM 14722
NCBI: GCA_020103775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.11	no
125439	gram_stain	BacteriaNetⓘ	positive	64.63	no
125439	motility	BacteriaNetⓘ	no	68.39	no
125439	spore_formation	BacteriaNetⓘ	no	86.89	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Stigmatella hybrida strain DSM 14722
PATRIC: 394097.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	89.98	no
125438	anaerobic	anaerobicⓘ	no	91.91	no
125438	spore-forming	spore-formingⓘ	no	73.83	no
125438	aerobic	aerobicⓘ	yes	75.18	no
125438	thermophilic	thermophileⓘ	no	95.74	yes
125438	flagellated	motile2+ⓘ	yes	67.47	no

Literature

Title	Authors	Journal	DOI	Year
Identification and Characterization of Novel Malto-Oligosaccharide-Forming Amylase AmyCf from Cystobacter sp. Strain CF23.	Wang J, Zhang L, Wang P, Lei J, Zhong L, Zhan L, Ye X, Huang Y, Luo X, Cui Z, Li Z.	Foods	10.3390/foods12183487	2023

References

#5507	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14722
#18281	Reichenbach, H.: Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ . Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH:
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119995	Collection of Institut Pasteur ; Curators of the CIP; CIP 109130
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Stigmatella hybrida (DSM 14722, CIP 109130, JCM 12640)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_020103775

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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