Hyalangium minutum (DSM 14724, CIP 109157, JCM 12630)

Name: Hyalangium minutum (DSM 14724, CIP 109157, JCM 12630)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3610

Type strain

Strain Designation NOCB-2

Culture col. no. DSM 14724 CIP 109157 JCM 12630 NOCB-2

NCBI tax ID(s) 394096

Special Collections DSMZ JCM CIP Reichenbach collection

History <- H. Reichenbach; NOCB-2 DSM 14724 <-- H. Reichenbach NOCB-2. CIP <- 2006, DSMZ <- H. Reichenbach, GBF, Braunschweig, Germany: strain NOCB-2

Links

Hyalangium minutum NOCB-2 is a Gram-positive, rod-shaped bacterium that was isolated from soil with decaying plant material.

Gram-positive rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 215429

DSM 14724,CIP 109157,JCM 12630

@ref 20215

Last LPSN update 2026-02-09 11:18:32

Domain Bacteria

Phylum Pseudomonadota

Class Deltaproteobacteria

Order Myxococcales

Family Archangiaceae

Genus Hyalangium

Species Hyalangium minutum

Full scientific name Hyalangium minutum Reichenbach 2007

BacDive ID	Other strains from **Hyalangium minutum** (21)	Type strain
3609	H. minutum Hy m4, DSM 14721
3611	H. minutum NOCB-4, DSM 14725
3612	H. minutum Hy m1, DSM 52873
3613	H. minutum Hy m5, DSM 52874
3614	H. minutum Hy m8, DSM 52875
3615	H. minutum Hy m9, DSM 52876
3616	H. minutum Hy m10, DSM 52877
3617	H. minutum Hy m11, DSM 52878
3618	H. minutum Hy m12, DSM 52879
3619	H. minutum Hy m13, DSM 52880
3620	H. minutum Hy m14, DSM 52881
3621	H. minutum Hy m15, DSM 52882
3622	H. minutum Hy m16, DSM 52883
3623	H. minutum Hy m17, DSM 52884
3624	H. minutum Hy m18, DSM 52885
3625	H. minutum Hy m23, DSM 52886
3626	H. minutum Hy m26, DSM 52887
3627	H. minutum DSM 53649, NOCB 10
3628	H. minutum DSM 53650, NOCB 11
3629	H. minutum DSM 53651, NOCB 13
100652	H. minutum SF002560(FSU),

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120966	positive	rod-shaped
125438	negative		91.976
125439	positive		95.1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5509	AGAR WITH E. COLI AS FEED (DSMZ Medium 942)	Medium recipe at MediaDive	Name: AGAR WITH E. COLI AS FEED (DSMZ Medium 942) Composition: Agar 15.0 g/l CaCl2 x 2 H2O 1.0 g/l Distilled water
5509	VY/2 AGAR (DSMZ Medium 9)	Medium recipe at MediaDive	Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
37456	MEDIUM 672 -for Cystobacter
120966	CIP Medium 672	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5509	positive	growth	30
37456	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	glycine betaine biosynthesis	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	starch degradation	100	10 of 10
66794	vitamin K metabolism	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	cardiolipin biosynthesis	100	7 of 7
66794	glycogen metabolism	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	acetate fermentation	100	4 of 4
66794	CMP-KDO biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	enterobactin biosynthesis	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	aspartate and asparagine metabolism	100	9 of 9
66794	ceramide biosynthesis	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	sulfopterin metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	NAD metabolism	94.44	17 of 18
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	myo-inositol biosynthesis	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	alanine metabolism	89.66	26 of 29
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	tryptophan metabolism	86.84	33 of 38
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	purine metabolism	81.91	77 of 94
66794	proline metabolism	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	methionine metabolism	80.77	21 of 26
66794	propionate fermentation	80	8 of 10
66794	factor 420 biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	hydrogen production	80	4 of 5
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	tyrosine metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	pyrimidine metabolism	77.78	35 of 45
66794	allantoin degradation	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	urea cycle	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	phenol degradation	75	15 of 20
66794	degradation of sugar alcohols	75	12 of 16
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	metabolism of disaccharids	72.73	8 of 11
66794	cholesterol biosynthesis	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	propanol degradation	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	citric acid cycle	71.43	10 of 14
66794	lipid metabolism	70.97	22 of 31
66794	oxidative phosphorylation	69.23	63 of 91
66794	sulfate reduction	69.23	9 of 13
66794	non-pathway related	68.42	26 of 38
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	arachidonic acid metabolism	66.67	12 of 18
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	cysteine metabolism	66.67	12 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	66.67	2 of 3
66794	carnitine metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	lysine metabolism	61.9	26 of 42
66794	polyamine pathway	60.87	14 of 23
66794	3-chlorocatechol degradation	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	Entner Doudoroff pathway	60	6 of 10
66794	carotenoid biosynthesis	59.09	13 of 22
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	aclacinomycin biosynthesis	57.14	4 of 7
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	dolichyl-diphosphooligosaccharide biosynthesis	54.55	6 of 11
66794	d-xylose degradation	54.55	6 of 11
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	degradation of sugar acids	52	13 of 25
66794	sphingosine metabolism	50	3 of 6
66794	catecholamine biosynthesis	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	cyclohexanol degradation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	degradation of pentoses	46.43	13 of 28
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	degradation of hexoses	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	mevalonate metabolism	42.86	3 of 7
66794	glycine metabolism	40	4 of 10
66794	bacilysin biosynthesis	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	chlorophyll metabolism	27.78	5 of 18
66794	alginate biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	toluene degradation	25	1 of 4
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Decomposing plant

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
5509	soil with decaying plant material	Japan	JPN	Asia
67770	Soil with plant residues	Japan	JPN	Asia
120966	Environment, Soil with decaying plant material	Japan	JPN	Asia	1992

Taxonmaps

69479

Global distribution of 16S sequence KP306732 (>99% sequence identity) for Hyalangium minutum subclade from Microbeatlas

Aquatic Samples	186
Soil Samples	1366
Animal Samples	159
Plant Samples	121
Total Samples	1832

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5509	1	Risk group (German classification) According to TRBA 466
120966	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM73731v1 assembly for Hyalangium minutum DSM 14724	contig	GCA_000737315	394096.7	2609460080	394096	67.29

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
5509	Unclassified Myxococcales 16S rRNA gene, isolate NOCB-2	AJ233949	1521	83465
5509	Hyalangium minutum strain DSM 14724 16S ribosomal RNA gene, partial sequence	DQ768124	1491	394096
67770	Hyalangium minutum strain DSM 14724 16S ribosomal RNA gene, complete sequence	KP306732	1524	394096

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hyalangium minutum DSM 14724
NCBI: GCA_000737315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	52.40	no
125439	motility	BacteriaNetⓘ	no	77.80	no
125439	gram_stain	BacteriaNetⓘ	positive	95.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	79.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hyalangium minutum strain DSM 14724
PATRIC: 394096.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	91.98	no
125438	anaerobic	anaerobicⓘ	no	91.45	no
125438	spore-forming	spore-formingⓘ	no	73.96	no
125438	aerobic	aerobicⓘ	yes	79.48	no
125438	thermophilic	thermophileⓘ	no	95.48	yes
125438	flagellated	motile2+ⓘ	yes	67.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Ribosomally Synthesized and Post-Translationally Modified Peptides Assembled by ThiF-like Adenylyltransferases: Recent Advances and Future Perspectives.	Zhu S, Liu Y, Wang H, Sun J, Yao J, Huang H.	Molecules	10.3390/molecules30132821	2025
Metabolism	Histidine-Triad Hydrolases Provide Resistance to Peptide-Nucleotide Antibiotics.	Yagmurov E, Tsibulskaya D, Livenskyi A, Serebryakova M, Wolf YI, Borukhov S, Severinov K, Dubiley S.	mBio	10.1128/mbio.00497-20	2020
Phylogeny	Comparative Genomics of Myxobacterial Chemosensory Systems.	Sharma G, Khatri I, Subramanian S.	J Bacteriol	10.1128/jb.00620-17	2018
Metabolism	Prokaryotic viperins produce diverse antiviral molecules.	Bernheim A, Millman A, Ofir G, Meitav G, Avraham C, Avraham C, Shomar H, Rosenberg MM, Tal N, Melamed S, Amitai G, Sorek R.	Nature	10.1038/s41586-020-2762-2	2021
Enzymology	Hyafurones, hyapyrrolines, and hyapyrones: polyketides from Hyalangium minutum.	Okanya PW, Mohr KI, Gerth K, Kessler W, Jansen R, Stadler M, Muller R	J Nat Prod	10.1021/np500145f	2014
Enzymology	Hyaladione, an S-methyl cyclohexadiene-dione from Hyalangium minutum.	Okanya PW, Mohr KI, Gerth K, Steinmetz H, Huch V, Jansen R, Muller R	J Nat Prod	10.1021/np200776v	2012
	Characterization of phytopathogen-preying Hyalangium versicolor sp. nov., and proposal for the reclassification of Cystobacter gracilis as Hyalangium gracile comb. Nov.	Zhang X, Feng G, Liu Y, Li J, Deng X, Yao Q, Zhu H.	Arch Microbiol	10.1007/s00203-023-03512-0	2023

References

#5509	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14724
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37456	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120966	Collection of Institut Pasteur ; Curators of the CIP; CIP 109157
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Hyalangium minutum (DSM 14724, CIP 109157, JCM 12630)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000737315

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media