Name: Cystobacter armeniaca Cb a1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3300

Type strain:

Species: Cystobacter armeniaca

Strain Designation: Cb a1

Culture col. no.: DSM 14710, CIP 109127, JCM 12622

Strain history: DSM 14710 <-- H. Reichenbach Cb a1.

NCBI tax ID(s): 394090 (species)

SI-ID 215419

DSM 14710, CIP 109127, JCM 12622

Special Collections

Other strains from Cystobacter armeniaca

Section

Cystobacter armeniaca Cb a1 is a bacterium that builds a fruiting body and was isolated from soil with decaying plant material.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Archangiaceae*
	Genus	*Cystobacter*
	Species	**Cystobacter armeniaca**
	Full Scientific Name (LPSN)	Cystobacter armeniaca Reichenbach 2007

Information on morphological and physiological properties Morphology

[Ref.: #18281]	Multicellular complex forming ability	yes *
[Ref.: #18281]	Multicellular complex name	fruiting body *

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5495]

Culture medium

AGAR WITH E. COLI AS FEED (DSMZ Medium 942)

[Ref.: #5495]

Culture medium growth

[Ref.: #5495]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5495]

Culture medium composition

expand / minimize

[Ref.: #5495]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

[Ref.: #5495]

Culture medium growth

[Ref.: #5495]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5495]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5495]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #5495]	14337	-	+	+	+	+/-	+	+	-	-	-	+	-	-	-	-	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5495]	Sample type/isolated from	soil with decaying plant material
[Ref.: #5495]	Geographic location (country and/or sea, region)	Arizona
[Ref.: #5495]	Country	USA
[Ref.: #5495]	Country ISO 3 Code	USA
[Ref.: #5495]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil with decaying plant material, the Sonoran savanna
[Ref.: #67770]	Geographic location (country and/or sea, region)	west of Tucson, AZ
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Decomposing plant

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5495]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5495]	Cystobacter armeniaca strain DSM 14710 16S ribosomal RNA gene, partial sequence	DQ768107	1491	GenBank ENA	394090 tax ID

Availability in culture collections External links

[Ref.: #5495]

Culture collection no.

DSM 14710, CIP 109127, JCM 12622

[Ref.: #72813]

SI-ID 215419

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vulgatibacter incomptus gen. nov., sp. nov. and Labilithrix luteola gen. nov., sp. nov., two myxobacteria isolated from soil in Yakushima Island, and the description of Vulgatibacteraceae fam. nov., Labilitrichaceae fam. nov. and Anaeromyxobacteraceae fam. nov.	Yamamoto E, Muramatsu H, Nagai K	Int J Syst Evol Microbiol	10.1099/ijs.0.063198-0	2014	*

References

#5495

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14710

#18281

Reichenbach, H.: Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ . Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#72813

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215419.1 )

* These data were automatically processed and therefore are not curated

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