Alcaligenes faecalis subsp. faecalis (DSM 30030, ATCC 8750, CCM 1052)

Name: Alcaligenes faecalis subsp. faecalis (DSM 30030, ATCC 8750, CCM 1052)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 327

Type strain

Strain Designation 16 (R. Hugh 135), 135, 16

Culture col. no. DSM 30030 ATCC 8750 CCM 1052 CIP 60.80 IFO 13111 32 more

NCBI tax ID(s) 1218102 511 32001

Special Collections DSMZ CCUG JCM KCTC CIP

History <- ATCC; ATCC 8750 <- H. J. Conn; 16 (R. Hugh 135) IAM 12369 <-- ATCC 8750 <-- H. J. Conn 16. CIP <- 1960, R. Hugh: strain 135 <- H.J. Conn: strain 16

Links

Alcaligenes faecalis subsp. faecalis 16 is an obligate aerobe, Gram-negative, rod-shaped human pathogen of the family Alcaligenaceae.

Gram-negative rod-shaped obligate aerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 92102

LMG 1229,ATCC 8750,CCM 1052,CCUG 1325,CCUG 1814,DSM 30030,IAM 12586,IFO 13111,IMET 10443,JCM 1474,LMG 2100,LMG 3366,LMG 3369,LMG 3371,NCDO 868,NCIB 8156,NCTC 11953,NBIMCC 153,NCIMB 8156,IAM12369,VKM B-1518,CIP 60.80,CECT 928,CCRC 10828,NCAIM B.01104,NCFB 868,VTT E-76056,KCTC 2678,AS 1.1786,NBRC 13111,CIP 55.84,HAMBI 1907,BCRC 10828,CCT 0192,CCT 1434,NCAIM B.02076,NCIM 2262,NCIM 2105,CNCTC 5644,JCM 20522,JCM 20663,CGMCC 1.2006,CGMCC 1.1786,CGMCC 1.0924,VTT E-97056

@ref 20215

Last LPSN update 2026-02-09 11:17:50

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Alcaligenes

Species Alcaligenes faecalis subsp. faecalis

Full scientific name Alcaligenes faecalis subsp. faecalis (Castellani and Chalmers 1919) Austin et al. 1981

Synonyms (1)

"Alcaligenes faecalis subsp. faecalis"

BacDive ID	Other strains from **Alcaligenes faecalis subsp. faecalis** (6)	Type strain
324	A. faecalis subsp. faecalis 799, DSM 2576
325	A. faecalis subsp. faecalis LRA 410282, DSM 6174, ATCC 35655
162972	A. faecalis subsp. faecalis JCM 20638, ATCC 27066, IAM 12560, NCIMB 10688
162973	A. faecalis subsp. faecalis JCM 20639, IAM 12561, LMG 3373, NCIMB 10703
162974	A. faecalis subsp. faecalis JCM 20640, IAM 12562, LMG 3372, NCIMB 10704
162980	A. faecalis subsp. faecalis JCM 20665, CIP R546, IAM 12588, LMG 3375

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119164	negative	rod-shaped
125438	negative		96.729
125439	negative		99.3

Colony morphology

9092

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9092	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9092	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
33018	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
68368	MacConkey medium			from API 20E
119164	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
9092	positive	growth	30
33018	positive	growth	30
67770	positive	growth	30
119164	positive	growth	5-41
119164	negative	growth	45

Physiology and metabolism

Oxygen tolerance

119164

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119164	NaCl	positive	growth	0-6 %
119164	NaCl		growth	8 %
119164	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
119164	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
119164	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
119164	606565 ChEBI	hippurate	+	hydrolysis
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
119164	15792 ChEBI	malonate	+	assimilation
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
119164	17632 ChEBI	nitrate	-	builds gas from
119164	17632 ChEBI	nitrate	-	reduction
119164	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
119164	16301 ChEBI	nitrite	+	builds gas from
119164	16301 ChEBI	nitrite	+	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119164	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
119164	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
119164	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+			from API 20E
119164	17234 ChEBI	glucose		-
68369	35581 ChEBI	indole			-	from API 20NE
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119164	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119164	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
119164	beta-galactosidase	-	3.2.1.23
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119164	caseinase	-	3.4.21.50
119164	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
119164	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119164	gamma-glutamyltransferase	+	2.3.2.2
119164	gelatinase	-
68369	gelatinase	-		from API 20NE
68368	gelatinase	-		from API 20E
119164	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119164	lipase	-
68382	lipase (C 14)	-		from API zym
119164	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119164	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
119164	oxidase	+
119164	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
119164	tryptophan deaminase	+
119164	tween esterase	-
119164	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
9092	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
9092	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
9092	-	-	-	-	+	-	-	+/-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	not determinedn.d.	+	-	-

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119164	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
9092	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+
9092	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	+	-
9092	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	+	not determinedn.d.
9092	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+
9092	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119164	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	+	+	-	+	+	+	-	-	-	-	+	-	-	+	+	+	+	+	+	-	+	+	+	+

Isolation, sampling and environmental information

Isolation

119164

Isolation date1942

Taxonmaps

69479

Global distribution of 16S sequence D88008 (>99% sequence identity) for Alcaligenes from Microbeatlas

Aquatic Samples	1182
Soil Samples	516
Animal Samples	2918
Plant Samples	286
Total Samples	4902

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
9092			2	Risk group (German classification) According to TRBA 466
119164			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM244315v1 assembly for Alcaligenes faecalis DSM 30030	complete	GCA_002443155	511.55	2846866227	511	95.35
124043	AFN_v2 assembly for Alcaligenes faecalis subsp. faecalis ATCC 8750	complete	GCA_958448115	32001.9		32001	92.19
67770	Afaecalis_assembly01 assembly for Alcaligenes faecalis subsp. faecalis NBRC 13111	contig	GCA_001748345	1218102.4	8118921414	1218102	70.19
67770	ASM73985v1 assembly for Alcaligenes faecalis subsp. faecalis NBRC 13111	contig	GCA_000739855	1218102.3	2600255060	1218102	69.79
66792	ASM2634409v1 assembly for Alcaligenes faecalis DSM 30030	contig	GCA_026344095	511.283	8118931803	511	69.6
67770	11861_6#28 assembly for Alcaligenes faecalis ATCC 8750	scaffold	GCA_001298815	134375.5	2690316351	511	64.59

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Alcaligenes faecalis subsp. faecalis gene for 16S rRNA, partial sequence, strain: NBRC 13111	AB680368	1462	32001
20218	A.faecalis 16S ribosomal RNA, complete cds	M22508	1476	511
9092	Alcaligenes faecalis gene for 16S ribosomal RNA	D88008	1470	511
124043	Alcaligenes faecalis subsp. faecalis strain BCRC 10828 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014606	635	32001
124043	Alcaligenes faecalis strain NBRC 13111 16S ribosomal RNA gene, partial sequence.	MN526955	490	511
124043	Alcaligenes faecalis strain NBRC 13111 16S ribosomal RNA gene, partial sequence.	MN527269	491	511
124043	Alcaligenes faecalis strain NBRC 13111 16S ribosomal RNA gene, partial sequence.	OM302006	1313	511
124043	Alcaligenes faecalis strain NBRC 13111 16S ribosomal RNA gene, partial sequence.	OR801641	1462	511
124043	Alcaligenes faecalis strain NBRC 13111 16S ribosomal RNA gene, partial sequence.	KU160539	1309	511
124043	Alcaligenes faecalis strain NBRC 13111 16S ribosomal RNA gene, partial sequence.	MT421929	859	511
124043	Alcaligenes faecalis strain NBRC 13111 16S ribosomal RNA gene, partial sequence.	MK463946	637	511
124043	Alcaligenes faecalis strain NBRC 13111 16S ribosomal RNA gene, partial sequence.	MN577016	395	511
124043	Alcaligenes faecalis strain NBRC -13111 16S ribosomal RNA gene, partial sequence.	MN527284	490	511
124043	Alcaligenes faecalis strain IAM 12369 16S ribosomal RNA gene, partial sequence.	KY802015	917	511
124043	Alcaligenes faecalis strain IAM 12369 16S ribosomal RNA gene, partial sequence.	KY805809	912	511

GC content

@ref	GC-content (mol%)	Method
9092	54.8
67770	57.1-58.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alcaligenes faecalis strain DSM 30030
PATRIC: 511.55

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	motility	BacteriaNetⓘ	yes	86.30	no
125439	spore_formation	BacteriaNetⓘ	no	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alcaligenes faecalis DSM 30030
NCBI: GCA_002443155.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.73	no
125438	anaerobic	anaerobicⓘ	no	97.18	yes
125438	aerobic	aerobicⓘ	yes	88.80	yes
125438	spore-forming	spore-formingⓘ	no	85.56	no
125438	thermophilic	thermophileⓘ	no	96.90	yes
125438	flagellated	motile2+ⓘ	yes	82.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Fe(III)-dependent Nrf activity determines nitrate reduction partitioning in nitrate-reducing communities.	Zhan J, Zhang L, Lai S, Guo J, Lin T, Liu G, Rensing C, Liu X, Zhou S.	mBio	10.1128/mbio.02220-25	2025
Biotechnology	Comparative Genomics Reveals Novel Species and Insights into the Biotechnological Potential, Virulence, and Resistance of Alcaligenes.	Pedrosa-Silva F, Venancio TM.	Genes (Basel)	10.3390/genes14091783	2023
	Genetic Foundations of Direct Ammonia Oxidation (Dirammox) to N₂ and MocR-Like Transcriptional Regulator DnfR in Alcaligenes faecalis Strain JQ135.	Xu SQ, Qian XX, Jiang YH, Qin YL, Zhang FY, Zhang KY, Hong Q, He J, Miao LL, Liu ZP, Li DF, Liu SJ, Qiu JG.	Appl Environ Microbiol	10.1128/aem.02261-21	2022
Genetics	Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant.	Felestrino EB, Sanchez AB, Caneschi WL, Lemes CGC, Assis RAB, Cordeiro IF, Fonseca NP, Villa MM, Vieira IT, Kamino LHY, do Carmo FF, da Silva AM, Thomas AM, Patane JSL, Ferreira FC, de Freitas LG, Varani AM, Ferro JA, Silva RS, Almeida NF, Garcia CCM, Setubal JC, Moreira LM.	PLoS One	10.1371/journal.pone.0241546	2020
Metabolism	Identification and Characterization of a Novel pic Gene Cluster Responsible for Picolinic Acid Degradation in Alcaligenes faecalis JQ135.	Qiu J, Zhao L, Xu S, Chen Q, Chen L, Liu B, Hong Q, Lu Z, He J.	J Bacteriol	10.1128/jb.00077-19	2019
Metabolism	Enhanced Alcaligenes faecalis Denitrification Rate with Electrodes as the Electron Donor.	Wang X, Yu P, Zeng C, Ding H, Li Y, Wang C, Lu A.	Appl Environ Microbiol	10.1128/aem.00683-15	2015
	Comparison of Mast Burkholderia Cepacia, Ashdown + Gentamicin, and Burkholderia Pseudomallei Selective Agar for the Selective Growth of Burkholderia Spp.	Edler C, Derschum H, Kohler M, Neubauer H, Frickmann H, Hagen RM.	Eur J Microbiol Immunol (Bp)	10.1556/1886.2016.00037	2017
Enzymology	Nitric oxide reductase (norB) genes from pure cultures and environmental samples.	Braker G, Tiedje JM.	Appl Environ Microbiol	10.1128/aem.69.6.3476-3483.2003	2003
Phylogeny	Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria.	Mellmann A, Cloud J, Maier T, Keckevoet U, Ramminger I, Iwen P, Dunn J, Hall G, Wilson D, Lasala P, Kostrzewa M, Harmsen D.	J Clin Microbiol	10.1128/jcm.00157-08	2008
	PCR-based preparation of 23S rRNA-targeted group-specific polynucleotide probes.	Ludwig W, Dorn S, Springer N, Kirchhof G, Schleifer KH.	Appl Environ Microbiol	10.1128/aem.60.9.3236-3244.1994	1994
Enzymology	Comparison of hand-held test kits, immunofluorescence microscopy, enzyme-linked immunosorbent assay, and flow cytometric analysis for rapid presumptive identification of Yersinia pestis.	Tomaso H, Thullier P, Seibold E, Guglielmo V, Buckendahl A, Rahalison L, Neubauer H, Scholz HC, Splettstoesser WD.	J Clin Microbiol	10.1128/jcm.00458-07	2007
Metabolism	A comparison of NO and N2O production by the autotrophic nitrifier Nitrosomonas europaea and the heterotrophic nitrifier Alcaligenes faecalis.	Anderson IC, Poth M, Homstead J, Burdige D.	Appl Environ Microbiol	10.1128/aem.59.11.3525-3533.1993	1993
Enzymology	2-amino-3-(oxirane-2,3-dicarboxamido)-propanoyl-valine, an effective peptide antibiotic from the epiphyte Pantoea agglomerans 48b/90.	Sammer UF, Volksch B, Mollmann U, Schmidtke M, Spiteller P, Spiteller M, Spiteller D.	Appl Environ Microbiol	10.1128/aem.01244-09	2009
Phylogeny	Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints.	Felske A, Akkermans AD, De Vos WM.	Appl Environ Microbiol	10.1128/aem.64.11.4581-4587.1998	1998
	First Case of Respiratory Infection in Rabbits Caused by Alcaligenes faecalis in Romania.	Iorgoni V, Iancu I, Popa I, Gligor A, Orghici G, Sicoe B, Badea C, Dreghiciu C, Pop C, Bochis T, Degi J, Costinar L, Pascu C, Herman V.	Vet Sci	10.3390/vetsci12010033	2025
Enzymology	Biologically active metabolites of Alcaligenes faecalis: diversity, statistical optimization, and future perspectives.	El-Sayed SE, Abdelaziz NA, Alshahrani MY, El-Housseiny GS, Aboshanab KM.	Future Sci OA	10.1080/20565623.2024.2430452	2024
	Whole-Genome Sequencing of Alcaligenes faecalis HZ01, with Potential to Inhibit Nontuberculous Mycobacterial Growth.	Fernandes HMZ, Conceicao EC, da Silva SP, Machado E, Sisco MC, Sharma A, Lima KVB, da Conceicao ML, da Silva Carvalho AC, Miranda KR, Silva Duarte R, Alviano DS, da Silva Dias RC.	Microbiol Resour Announc	10.1128/mra.00521-21	2021
Metabolism	From sequence to function: a new workflow for nitrilase identification.	Egelkamp R, Friedrich I, Hertel R, Daniel R.	Appl Microbiol Biotechnol	10.1007/s00253-020-10544-9	2020
Transcriptome	Draft genome sequence of Alcaligenes faecalis subsp. faecalis NCIB 8687 (CCUG 2071).	Phung le T, Trimble WL, Meyer F, Gilbert JA, Silver S.	J Bacteriol	10.1128/jb.01185-12	2012
	Analytical Performance Characteristics of a New Transcription-Mediated Amplification Assay for Treponema pallidum.	Getman D, Lin M, Barakat N, Skvoretz R, Godornes C, Swenson P, Nenninger A, Golden MR, Lukehart SA.	J Clin Microbiol	10.1128/jcm.00511-21	2021
	Control of Helicobacter pylori with engineered probiotics secreting selective guided antimicrobial peptides.	Choudhury A, Ortiz PS, Young M, Mahmud MT, Stoffel RT, Greathouse KL, Kearney CM.	Microbiol Spectr	10.1128/spectrum.02014-23	2023
	Two Tachykinin-Related Peptides with Antimicrobial Activity Isolated from Triatoma infestans Hemolymph.	Diniz LCL, Alves FL, Miranda A, da Silva Junior PI.	Microbiol Insights	10.1177/1178636120933635	2020
Pathogenicity	Antimicrobial activity and mechanism of action of a novel peptide present in the ecdysis process of centipede Scolopendra subspinipes subspinipes.	Chaparro-Aguirre E, Segura-Ramirez PJ, Alves FL, Riske KA, Miranda A, Silva Junior PI.	Sci Rep	10.1038/s41598-019-50061-y	2019
Metabolism	Discovery and characterization of a highly efficient enantioselective mandelonitrile hydrolase from Burkholderia cenocepacia J2315 by phylogeny-based enzymatic substrate specificity prediction.	Wang H, Sun H, Wei D.	BMC Biotechnol	10.1186/1472-6750-13-14	2013
Genetics	The draft genome of Staphylococcus warneri TRPF4, a bacteriocin producer with potent activity against the causative agent of Legionnaires' Disease.	Freitas FS, Vidigal PMP, Siqueira TP, de Barros M, Totola MR.	3 Biotech	10.1007/s13205-020-02231-3	2020
Phylogeny	Fluorescence in situ hybridization for rapid identification of Achromobacter xylosoxidans and Alcaligenes faecalis recovered from cystic fibrosis patients.	Wellinghausen N, Wirths B, Poppert S.	J Clin Microbiol	10.1128/jcm.00508-06	2006
Genetics	Comparative Genomic Analysis Reveals Key Changes in the Genome of Acremonium chrysogenum That Occurred During Classical Strain Improvement for Production of Antibiotic Cephalosporin C.	Zhgun AA.	Int J Mol Sci	10.3390/ijms26010181	2024
Enzymology	Relative abundances of proteobacterial membrane-bound and periplasmic nitrate reductases in selected environments.	Bru D, Sarr A, Philippot L.	Appl Environ Microbiol	10.1128/aem.00643-07	2007
Enzymology	Human Antimicrobial Peptide Isolated From Triatoma infestans Haemolymph, Trypanosoma cruzi-Transmitting Vector.	Diniz LCL, Miranda A, da Silva PI.	Front Cell Infect Microbiol	10.3389/fcimb.2018.00354	2018
	A Novel Assay for Detection of Methicillin-Resistant Staphylococcus aureus Directly From Clinical Samples.	McClure JA, Conly JM, Obasuyi O, Ward L, Ugarte-Torres A, Louie T, Zhang K.	Front Microbiol	10.3389/fmicb.2020.01295	2020
Biotechnology	Validation of the One Broth One Plate for Salmonella Method for Detection of Salmonella Spp. in Select Food and Environmental Samples: AOAC Performance Tested MethodSM 102002.	Alles S, Roman B, Le QN, Kurteu M, Elmerhebi E, Potter C, Mozola M, Thompson W, Bastin B, Donofrio R.	J AOAC Int	10.1093/jaoacint/qsaa149	2021
Metabolism	Characterization of a nitrilase and a nitrile hydratase from Pseudomonas sp. strain UW4 that converts indole-3-acetonitrile to indole-3-acetic acid.	Duca D, Rose DR, Glick BR.	Appl Environ Microbiol	10.1128/aem.00649-14	2014
Metabolism	An inhibitory compound produced by a soil isolate of Rhodococcus has strong activity against the veterinary pathogen R. equi.	Ward AL, Reddyvari P, Borisova R, Shilabin AG, Lampson BC.	PLoS One	10.1371/journal.pone.0209275	2018
Metabolism	PCR detection of genes encoding nitrite reductase in denitrifying bacteria.	Hallin S, Lindgren PE.	Appl Environ Microbiol	10.1128/aem.65.4.1652-1657.1999	1999
Metabolism	Conversion of sterically demanding alpha,alpha-disubstituted phenylacetonitriles by the arylacetonitrilase from Pseudomonas fluorescens EBC191.	Baum S, Williamson DS, Sewell T, Stolz A.	Appl Environ Microbiol	10.1128/aem.05570-11	2012
	A comparison of the antimicrobial activity and toxicity of six combretum and two terminalia species from southern Africa.	Cock IE, Van Vuuren SF.	Pharmacogn Mag	10.4103/0973-1296.149740	2015
Metabolism	Phylogenetic analysis of culturable dimethyl sulfide-producing bacteria from a spartina-dominated salt marsh and estuarine water.	Ansede JH, Friedman R, Yoch DC.	Appl Environ Microbiol	10.1128/aem.67.3.1210-1217.2001	2001
	Anti-Biofilm Activity of a Self-Aggregating Peptide against Streptococcus mutans.	Ansari JM, Abraham NM, Massaro J, Murphy K, Smith-Carpenter J, Fikrig E.	Front Microbiol	10.3389/fmicb.2017.00488	2017
	Purification and Characterization of d-Aminoacylase from Alcaligenes faecalis DA1.	Yang YB, Lin CS, Tseng CP, Wang YJ, Tsai YC.	Appl Environ Microbiol	10.1128/aem.57.4.1259-1260.1991	1991
Enzymology	Distribution of aldoxime dehydratase in microorganisms.	Kato Y, Ooi R, Asano Y.	Appl Environ Microbiol	10.1128/aem.66.6.2290-2296.2000	2000
Enzymology	Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils.	Henry S, Bru D, Stres B, Hallet S, Philippot L.	Appl Environ Microbiol	10.1128/aem.00231-06	2006
Phylogeny	Differentiation of Alcaligenes-like bacteria of avian origin and comparison with Alcaligenes spp. reference strains.	Berkhoff HA, Riddle GD.	J Clin Microbiol	10.1128/jcm.19.4.477-481.1984	1984
Phylogeny	Differentiation of Bordetella avium and related species by cellular fatty acid analysis.	Moore CJ, Mawhinney H, Blackall PJ.	J Clin Microbiol	10.1128/jcm.25.6.1059-1062.1987	1987
Metabolism	Domains of Escherichia coli acyl carrier protein important for membrane-derived-oligosaccharide biosynthesis.	Tang L, Weissborn AC, Kennedy EP.	J Bacteriol	10.1128/jb.179.11.3697-3705.1997	1997
Metabolism	Strategies for discovery and improvement of enzyme function: state of the art and opportunities.	Kaul P, Asano Y.	Microb Biotechnol	10.1111/j.1751-7915.2011.00280.x	2012
Enzymology	Dissimilatory nitrite reductase genes from autotrophic ammonia-oxidizing bacteria.	Casciotti KL, Ward BB.	Appl Environ Microbiol	10.1128/aem.67.5.2213-2221.2001	2001
Phylogeny	Identification of dimethyl disulfide-forming bacteria isolated from activated sludge.	Tomita B, Inoue H, Chaya K, Nakamura A, Hamamura N, Ueno K, Watanabe K, Ose Y.	Appl Environ Microbiol	10.1128/aem.53.7.1541-1547.1987	1987
Phylogeny	Identification and differentiation of Taylorella equigenitalis and Taylorella asinigenitalis by lipopolysaccharide O-antigen serology using monoclonal antibodies.	Brooks BW, Lutze-Wallace CL, Maclean LL, Vinogradov E, Perry MB.	Can J Vet Res		2010
	AOAC-OMA/MicroVal Harmonized Validation of Peel PlateTM EB (Enterobacteriaceae Bacteria), First Action 2018.05.	Salter RS, Durbin GW, Martinez D, Bird P, Bastin B, Crowley E.	J AOAC Int	10.1093/jaoacint/qsaa067	2020
Metabolism	Heterotrophic nitrification among denitrifiers.	Castignetti D, Hollocher TC.	Appl Environ Microbiol	10.1128/aem.47.4.620-623.1984	1984
	Native valve endocarditis caused by an organism resembling Corynebacterium striatum.	Markowitz SM, Coudron PE.	J Clin Microbiol	10.1128/jcm.28.1.8-10.1990	1990
Enzymology	Nitric oxide reductase-targeted real-time PCR quantification of denitrifier populations in soil.	Dandie CE, Miller MN, Burton DL, Zebarth BJ, Trevors JT, Goyer C.	Appl Environ Microbiol	10.1128/aem.00081-07	2007
Metabolism	Comparison of methods for quantification of cytochrome cd(1)-denitrifying bacteria in environmental marine samples.	Michotey V, Mejean V, Bonin P.	Appl Environ Microbiol	10.1128/aem.66.4.1564-1571.2000	2000
Enzymology	Purification and characterization of beta-glucosidase of Alcaligenes faecalis.	Han YW, Srinivasan VR.	J Bacteriol	10.1128/jb.100.3.1355-1363.1969	1969
Pathogenicity	Novel cyclic lipodepsipeptide from Pseudomonas syringae pv. lachrymans strain 508 and syringopeptin antimicrobial activities.	Grgurina I, Bensaci M, Pocsfalvi G, Mannina L, Cruciani O, Fiore A, Fogliano V, Sorensen KN, Takemoto JY.	Antimicrob Agents Chemother	10.1128/aac.49.12.5037-5045.2005	2005
	Conjugative Type 4 secretion system of a novel large plasmid from the chemoautotroph Tetrathiobacter kashmirensis and construction of shuttle vectors for Alcaligenaceae.	Dam B, Ghosh W, Das Gupta SK.	Appl Environ Microbiol	10.1128/aem.02521-08	2009
	Detection of bacterial growth by gas absorption.	Waters JR.	J Clin Microbiol	10.1128/jcm.30.5.1205-1209.1992	1992
Metabolism	The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations.	Rotthauwe JH, Witzel KP, Liesack W.	Appl Environ Microbiol	10.1128/aem.63.12.4704-4712.1997	1997
Phylogeny	Evaluation of the Biolog automated microbial identification system.	Klingler JM, Stowe RP, Obenhuber DC, Groves TO, Mishra SK, Pierson DL.	Appl Environ Microbiol	10.1128/aem.58.6.2089-2092.1992	1992
	Deoxyribonucleic acid base composition and Adansonian analysis of heterotrophic aerobic pseudomonads.	Colwell RR, Citarella RV, Ryman I.	J Bacteriol	10.1128/jb.90.4.1148-1149.1965	1965
Metabolism	Polyclonal antibodies recognizing the AmoB protein of ammonia oxidizers of the beta-subclass of the class Proteobacteria.	Pinck C, Coeur C, Potier P, Bock E.	Appl Environ Microbiol	10.1128/aem.67.1.118-124.2001	2001
Metabolism	Production of S-(+)-ibuprofen from a nitrile compound by Acinetobacter sp. strain AK226.	Yamamoto K, Ueno Y, Otsubo K, Kawakami K, Komatsu K.	Appl Environ Microbiol	10.1128/aem.56.10.3125-3129.1990	1990
	DNA probe specific for Legionella pneumophila.	Grimont PA, Grimont F, Desplaces N, Tchen P.	J Clin Microbiol	10.1128/jcm.21.3.431-437.1985	1985
	Beta-lactam antibiotic biosynthetic genes have been conserved in clusters in prokaryotes and eukaryotes.	Smith DJ, Burnham MK, Bull JH, Hodgson JE, Ward JM, Browne P, Brown J, Barton B, Earl AJ, Turner G.	EMBO J	10.1002/j.1460-2075.1990.tb08168.x	1990
	Characterization of murine monoclonal antibodies against serogroup B salmonellae and application as serotyping reagents.	Tsang RS, Chan KH, Lau NW, Choi DK, Law DK, Ng MH.	J Clin Microbiol	10.1128/jcm.29.9.1899-1903.1991	1991
Biotechnology	Detection of Salmonella spp. in oysters by PCR.	Bej AK, Mahbubani MH, Boyce MJ, Atlas RM.	Appl Environ Microbiol	10.1128/aem.60.1.368-373.1994	1994
	Enumeration of Vibrio cholerae O1 in Bangladesh waters by fluorescent-antibody direct viable count.	Brayton PR, Tamplin ML, Huq A, Colwell RR.	Appl Environ Microbiol	10.1128/aem.53.12.2862-2865.1987	1987
	Antigenic and molecular conservation of the gonococcal NspA protein.	Plante M, Cadieux N, Rioux CR, Hamel J, Brodeur BR, Martin D.	Infect Immun	10.1128/iai.67.6.2855-2861.1999	1999
	Changes in cell wall carbohydrate composition of Paecilomyces persicinus P-10 M1 during growth and cephalosporin C production.	Malowitz R, Pisano MA.	Appl Environ Microbiol	10.1128/aem.43.4.916-923.1982	1982
	Relative rates of nitric oxide and nitrous oxide production by nitrifiers, denitrifiers, and nitrate respirers.	Anderson IC, Levine JS.	Appl Environ Microbiol	10.1128/aem.51.5.938-945.1986	1986
Metabolism	N-Nitrosamine formation by cultures of several microorganisms.	Mills AL, Alexander M.	Appl Environ Microbiol	10.1128/aem.31.6.892-895.1976	1976
Enzymology	Enzyme immunoassay for identification of Vibrio vulnificus in seawater, sediment, and oysters.	Tamplin ML, Martin AL, Ruple AD, Cook DW, Kaspar CW.	Appl Environ Microbiol	10.1128/aem.57.4.1235-1240.1991	1991
Metabolism	Synthesis of deactoxycephalosporin C by a mutant of Cephalosporium acremonium.	Queener SW, Capone JJ, Radue AB, Nagarajan R.	Antimicrob Agents Chemother	10.1128/aac.6.3.334	1974
	ADANSONIAN ANALYSIS AND DEOXYRIBONUCLEIC ACID BASE COMPOSITION OF SOME GRAM-NEGATIVE BACTERIA.	COLWELL RR, MANDEL M.	J Bacteriol	10.1128/jb.87.6.1412-1422.1964	1964
Enzymology	Group-specific small-subunit rRNA hybridization probes to characterize filamentous foaming in activated sludge systems.	de los Reyes FL, Ritter W, Raskin L.	Appl Environ Microbiol	10.1128/aem.63.3.1107-1117.1997	1997
Metabolism	Development and application of 16S rRNA-targeted probes for detection of iron- and manganese-oxidizing sheathed bacteria in environmental samples.	Siering PL, Ghiorse WC.	Appl Environ Microbiol	10.1128/aem.63.2.644-651.1997	1997
Metabolism	Nucleic acid enzyme studies of nonfermentative gram-negative bacteria using thin-layer chromatography.	Klein MM, Blazevic DJ.	Appl Microbiol	10.1128/am.23.2.276-280.1972	1972
	Occurrence and characteristics of agglutination of Vibrio cholerae by serum from the eastern oyster, Crassostrea virginica.	Tamplin ML, Fisher WS.	Appl Environ Microbiol	10.1128/aem.55.11.2882-2887.1989	1989
	Stability and Activities of Antibiotics Produced during Infection of the Insect Galleria mellonella by Two Isolates of Xenorhabdus nematophilus.	Maxwell PW, Chen G, Webster JM, Dunphy GB.	Appl Environ Microbiol	10.1128/aem.60.2.715-721.1994	1994
Enzymology	Numerically dominant denitrifying bacteria from world soils.	Gamble TN, Betlach MR, Tiedje JM.	Appl Environ Microbiol	10.1128/aem.33.4.926-939.1977	1977
Enzymology	Choline oxidase, a catabolic enzyme in Arthrobacter pascens, facilitates adaptation to osmotic stress in Escherichia coli.	Rozwadowski KL, Khachatourians GG, Selvaraj G.	J Bacteriol	10.1128/jb.173.2.472-478.1991	1991
Cultivation	SELECTIVE MEDIA FOR THE ISOLATION OF PASTEURELLA PESTIS.	KNISELY RF, SWANEY LM, FRIEDLANDER H.	J Bacteriol	10.1128/jb.88.2.491-496.1964	1964
	Development of the agar disk method for the rapid selection of cephalosporin producers with improved yields.	Trilli A, Michelini V, Mantovani V, Pirt SJ.	Antimicrob Agents Chemother	10.1128/aac.13.1.7	1978
Metabolism	Superoxide dismutase and oxygen metabolism in Streptococcus faecalis and comparisons with other organisms.	Britton L, Malinowski DP, Fridovich I.	J Bacteriol	10.1128/jb.134.1.229-236.1978	1978
Enzymology	Comparative control of a branch-point enzyme in microorganisms.	Jensen RA, Nasser DS, Nester EW.	J Bacteriol	10.1128/jb.94.5.1582-1593.1967	1967
	OCCURRENCE OF ORNITHINE delta-TRANSAMINASE: A DICHOTOMY.	Scher WI, Vogel HJ.	Proc Natl Acad Sci U S A	10.1073/pnas.43.9.796	1957
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Phylogeny	Taxonomy of aerobic marine eubacteria.	Baumann L, Baumann P, Mandel M, Allen RD.	J Bacteriol	10.1128/jb.110.1.402-429.1972	1972
Metabolism	Distribution of xanthine oxidase and xanthine dehydrogenase specificity types among bacteria.	Woolfolk CA, Downard JS.	J Bacteriol	10.1128/jb.130.3.1175-1191.1977	1977
Enzymology	Isolation and Characterization of Highly Active Uricase from Alcaligenes spp. Strain UR1.	Alshareef A, El-Readi MZ, Neyaz LA, Abulreesh HH, Alsaigh AA, Khalel AF, Alshehri WA, Elbanna K.	Pol J Microbiol	10.33073/pjm-2025-009	2025
	Isolation and identification of Alcaligenes faecalis W2-3 with high-yield production of dimethyl disulfide.	Wu P, Deng S, Li J, Wei X, Zheng R, Men X, Zhang H.	Sci Rep	10.1038/s41598-025-04904-6	2025
Genetics	Genome Characterisation of an Isoprene-Degrading Alcaligenes sp. Isolated from a Tropical Restored Forest.	Uttarotai T, Sutheeworapong S, Crombie AT, Murrell JC, Mhuantong W, Noirungsee N, Wangkarn S, Bovonsombut S, McGenity TJ, Chitov T.	Biology (Basel)	10.3390/biology11040519	2022
	Strategy of Salt Tolerance and Interactive Impact of Azotobacter chroococcum and/or Alcaligenes faecalis Inoculation on Canola (Brassica napus L.) Plants Grown in Saline Soil.	Abdel Latef AAH, Omer AM, Badawy AA, Osman MS, Ragaey MM.	Plants (Basel)	10.3390/plants10010110	2021
Genetics	Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface.	Goff JL, Szink EG, Durrence KL, Lui LM, Nielsen TN, Kuehl JV, Hunt KA, Chandonia JM, Huang J, Thorgersen MP, Poole FL, Stahl DA, Chakraborty R, Deutschbauer AM, Arkin AP, Adams MWW.	Environ Microbiome	10.1186/s40793-024-00570-9	2024
	Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207.	Basharat Z, Yasmin A, He T, Tong Y.	Sci Rep	10.1038/s41598-018-21919-4	2018
Metabolism	Gene expression analysis of Alcaligenes faecalis during induction of heterotrophic nitrification.	Tsujino S, Dohra H, Fujiwara T.	Sci Rep	10.1038/s41598-021-02579-3	2021
	Inhibition of Adherence and Biofilm Formation of Pseudomonas aeruginosa by Immobilized ZnO Nanoparticles on Silicone Urinary Catheter Grafted by Gamma Irradiation.	Elzahaby DA, Farrag HA, Haikal RR, Alkordi MH, Abdeltawab NF, Ramadan MA.	Microorganisms	10.3390/microorganisms11040913	2023
Phylogeny	Phylogenetic affiliation and determination of bioactive compounds of bacterial population associated with organs of mud crab, Scylla olivacea.	Zote J, Passari AK, Zothanpuia, Siddaiah CN, Kumar NS, Abd Allah EF, Hashem A, Alqarawi AA, Malik JA, Singh BP.	Saudi J Biol Sci	10.1016/j.sjbs.2018.08.025	2018
Phylogeny	Molecular characterization and amplified ribosomal DNA restriction analysis of entomopathogenic bacteria associated with Rhabditis (Oscheius) spp.	Sangeetha BG, Jayaprakas CA, Siji JV, Rajitha M, Shyni B, Mohandas C.	3 Biotech	10.1007/s13205-015-0326-1	2016
	Mechanisms of halotolerant plant growth promoting Alcaligenes sp. involved in salt tolerance and enhancement of the growth of rice under salinity stress.	Fatima T, Mishra I, Verma R, Arora NK.	3 Biotech	10.1007/s13205-020-02348-5	2020
Metabolism	Alcaligenes faecalis ZD02, a Novel Nematicidal Bacterium with an Extracellular Serine Protease Virulence Factor.	Ju S, Lin J, Zheng J, Wang S, Zhou H, Sun M.	Appl Environ Microbiol	10.1128/aem.03444-15	2016
	Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste.	Mathews SL, Epps MJ, Blackburn RK, Goshe MB, Grunden AM, Dunn RR.	R Soc Open Sci	10.1098/rsos.180748	2019
	Compilation of 5S rRNA and 5S rRNA gene sequences.	Specht T, Wolters J, Erdmann VA.	Nucleic Acids Res	10.1093/nar/18.suppl.2215	1990
	Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid.	De Ley J.	J Bacteriol	10.1128/jb.101.3.738-754.1970	1970
	Characterization of polyhydroxybutyrate (PHB) sustainably produced by Alcaligenes faecalis utilizing lactic acid as a renewable substrate.	Dhawan A, Kalyanasundaram D, Manna PK, Pfeffer FM, Bohidar HB, Smith C, Williams R, Singh PP.	Int J Biol Macromol	10.1016/j.ijbiomac.2025.147462	2025
Pathogenicity	Identification of an M20 Family Metallopeptidase with Amidohydrolase Activity from Alcaligenes faecalis HNGD-HTN06 and Simultaneous Degradation of Ochratoxin A, Aflatoxin B₁, and Zearalenone.	Hou M, Mei X, Mwabulili F, Li Q, Jia H, Huang Q, Xie Y.	J Agric Food Chem	10.1021/acs.jafc.5c06860	2025
	Microbial Antagonists as Bio-Pesticides for Controlling Bacterial Leaf Blight Caused by Xanthomonas oryzae pv. Oryzae.	Sahoo AA, Pallavi P, Sahoo PP, Panda AK, Sen SK, Raut S.	J Basic Microbiol	10.1002/jobm.70117	2025
	Fe₃O₄-Enhanced Continuous Production of Medium-chain Fatty Acids from Sludge: Metagenomic Perspective on Microbial Synergy.	Chen Z, Zhu S, Gao S, Wu H, Tian S, Wen X.	Bioresour Technol	10.1016/j.biortech.2025.133673	2025
	Influence of bacterial strains on oviposition and larval development of two BTV vector species of Culicoides (Diptera: Ceratopogonidae): An approach to colony establishment.	Sarkar A, Banerjee P, Mazumdar A.	Med Vet Entomol	10.1111/mve.70015	2025
	Alcaligenes faecalis induces intestinal T helper-17 cells by enhancing Rorc transcription through E3 ligase Trim21-mediated Fbxw7 degradation.	Shen Y, Ma Z, Wang H, Chen Y, Fang Y, Apetoh L, Zhang G, He F, Xie S, Guo J, Cao S, Li H, Wang Q, Wang J, Xu J, Cai Z.	Immunity	10.1016/j.immuni.2025.03.008	2025
	Modification of graphite anode with chitosan loaded with iron oxide and carbon nanotubes nanocomposite for boosting the bioelectricity generation in microbial fuel cells.	Ali HE, El-Hendawy HH, El-Liethy MA, Jadhav DA, Aysha TS, Ali M, El-Taweel GE, Hemdan BA.	Int J Biol Macromol	10.1016/j.ijbiomac.2025.147896	2025
	Characterisation of the antimicrobial resistance profile of culturable Gram-negative bacterial isolates from green sea turtles (Chelonia mydas) in the Gulf of Thailand.	Ghafoor D, Kinobe R, Chen CCM, Prasetsincharoen N, Chomchat P, Sangkachai N, Hayakijkosol O.	Mar Environ Res	10.1016/j.marenvres.2025.107466	2025
	Konjac glucomannan and curdlan modulate the rheological properties and digestive behaviors of oil-in-water emulsions during in vitro gastrointestinal digestion	Pan R, Iqbal S, Nana, Chen H, Bhutto RA, Rehman W, Chen XD, Wu P.	Journal of food engineering.		2025
	First report of chromosomal co-occurrence of bla_AFM-3 and bla_IMP-45 genes in a multidrug-resistant Pseudomonas aeruginosa clinical isolate.	Zhong YX, Cai GJ, Dai LT, Yang L, Chen DQ, Yuan PB.	J Glob Antimicrob Resist	10.1016/j.jgar.2025.08.013	2025
	First record of bacterial communities within defecated contents and gut of post-defecated females of Culicoides peregrinus Kieffer and Culicoides oxystoma Kieffer (Diptera: Ceratopogonidae), vectors of bluetongue virus.	Sarkar A, Banerjee P, Mazumdar A.	Med Vet Entomol	10.1111/mve.12809	2025
Pathogenicity	Investigating the influence of blood meal sources on the composition of culturable haemolytic gut bacteria of a wild-caught BTV vector Culicoides oxystoma Kieffer (Diptera: Ceratopogonidae).	Sarkar A, Banerjee P, Kar S, Pal A, Mazumdar A.	Med Vet Entomol	10.1111/mve.12793	2025
	Antifungal, growth-promoting, and lignocellulose degrading-bacteria from compost and casing soil of button mushroom (Agaricus bisporus).	Kumar A, Verma R, Sharma VP, Kumar S, Kamal S, Goyanka J, Sharma S, Sharma P.	Environ Sci Pollut Res Int	10.1007/s11356-025-36325-3	2025
Genetics	Characterization and degradation mechanism of a newly isolated hydrolyzed polyacrylamide-degrading bacterium Alcaligenes faecalis EPDB-5 from the oilfield sludge.	Yu Y, Li Y, Sun B, Cui J, Liu H, Sun Y, Xu Q, Boisse N, Voelker F, Matioszek D, Favero C, Kieffer J, Li Y, Lu J, Li H, Bao M.	Environ Pollut	10.1016/j.envpol.2024.125124	2024
	Contact lens-related keratitis due to an emerging pathogen Alcaligenes faecalis.	Anitha V, Soni A, Ghorpade AS, Ravindran M, Rani U.	Oman J Ophthalmol	10.4103/ojo.ojo_203_23	2025
	Hydroxylamine production by Alcaligenes faecalis challenges the paradigm of heterotrophic nitrification.	Lenferink WB, Bakken LR, Jetten MSM, van Kessel MAHJ, Lucker S.	Sci Adv	10.1126/sciadv.adl3587	2024
	Isolation and Whole Genome Sequence Analysis of Alcaligenes and Chromobacterium Strains with Antimicrobial Activity Against ESKAPE Pathogen Relatives.	Lwin HW, Dattelbaum JD.	J Genomics	10.7150/jgen.115133	2025
	Alcaligenes faecalis, Stenotrophomonas maltophilia, and Pseudomonas aeruginosa in a Mixed Microbial Contact Lens Keratitis: A Case Report.	Ahmad SN, Loomba A, Goel S.	Cureus	10.7759/cureus.76202	2024
Genetics	Delineating the Acquired Genetic Diversity and Multidrug Resistance in Alcaligenes from Poultry Farms and Nearby Soil.	Bhattacharjee A, Singh AK.	J Microbiol	10.1007/s12275-024-00129-w	2024
	Fluorescence-Based In Vitro Detection of Wound-Associated Bacteria with a Handheld Imaging System.	Horn J, Dalinskaya A, Paluch E, Nord FO, Ruopp J.	Diagnostics (Basel)	10.3390/diagnostics15192436	2025
	Bioelectricity facilitates carbon dioxide fixation by Alcaligenes faecalis ZS-1 in a biocathodic microbial fuel cell (MFC).	Li X, Jia T, Zhu H, Cai L, Lu Y, Wang J, Tao H, Li P.	Bioresour Technol	10.1016/j.biortech.2024.130555	2024
	Structural insight into the subclass B1 metallo-beta-lactamase AFM-1.	Niu W, Ti R, Li D, Dong R, Dong J, Ye Y, Xiao Y, Wang Z.	Biochem Biophys Res Commun	10.1016/j.bbrc.2024.150102	2024
	In vitro and in vivo screening of bacterial species from contaminated soil for heavy metal biotransformation activity.	Doolotkeldieva T, Bobusheva S, Konurbaeva M.	J Environ Sci Health B	10.1080/03601234.2024.2343236	2024
	Identification of poultry commensal bacteria with the ability to inhibit the growth of Salmonella enterica serovar Typhimurium in co-culture.	Feng Z, Dagenais V, Leclerc V, Pigozzo C, Ronholm J.	BMC Microbiol	10.1186/s12866-025-04482-7	2025
	Therapeutic potential of greenly synthesized selenium nanoparticles against experimental cyclosporiasis.	Hezema NN, Eltarahony MM, Afifi H, Abdel Salam SA.	Sci Rep	10.1038/s41598-025-15238-8	2025
	Isolation and comparative analysis of culturable bacterial communities associated with life stages, breeding and rearing substrates of Culicoides oxystoma Kieffer (Diptera: Ceratopogonidae) vector of bluetongue virus.	Sarkar A, Banerjee P, Mazumdar A.	Med Vet Entomol	10.1111/mve.12754	2024
	Evaluation of the Efficacy of Three Antagonistic Bacteria Strains in the Management of Fire Blight.	Zhang J, Zhang Z, Wen Y, Zhu J, Wufuerjiang A, Tian J.	Int J Mol Sci	10.3390/ijms26094438	2025
	Characterizing the microbiome of "sterile" organs in experimental mice and evidence of translocation of bacteria from the gut to other internal organs.	Xu M, Guan S, Zhong C, Ma M, Tao L, Huang G.	Imeta	10.1002/imt2.70081	2025
Genetics	Comparative analysis of the diversity of trinucleotide repeats in bacterial genomes.	Paul B, Siddaramappa S.	Genome	10.1139/gen-2023-0097	2024
	Performance enhancement, bacterial communities optimization and emerging pollutants elimination by microalgal-bacterial consortium for treating aquaculture pond sediments.	Wang X, Li S, Mi R, Dong Y, Jiang J, Guan X, Wang X, Ye B, Liu D, Zhao Z, Gao X, Zhou Z.	J Environ Manage	10.1016/j.jenvman.2024.121013	2024
	Synthesis of New Multifunctional Linolenic Acid Vanillyl Ester and Investigation of Antioxidant and Antibacterial Activities.	Marvella JI, Kim HK.	Appl Biochem Biotechnol	10.1007/s12010-024-04945-z	2024
	A C-type lectin with dual carbohydrate recognition domains functions in innate immune response in Asian corn borer, Ostrinia furnacalis.	Li ET, Ji JY, Kong WJ, Shen DX, Li C, An CJ.	Insect Sci	10.1111/1744-7917.13382	2025
	Optimization of a medium composition for the heterologous production of Alcaligenes faecalis penicillin G acylase in Bacillus megaterium.	Lopes W, Deolindo P, de Souza Costa AA, Gomes da Silva MT, de Miranda OP, Pacheco GJ.	Protein Expr Purif	10.1016/j.pep.2023.106327	2023
	Preliminary snapshot reveals a relationship between multidrug-resistance and biofilm production among enterobacteriaceae isolated from fecal samples of farm-raised poultry in ceará, Brazil.	Chaves AC, Boa Ventura PV, Pereira MS, da Silva BF, de Carvalho FJN, Costa RA, Lima BP, Maciel WC, Carneiro VA.	Microb Pathog	10.1016/j.micpath.2024.106778	2024
	Relationship between the composition of vaginal bacterial populations and the reproductive stage in captive collared peccaries.	Cavalcante YCS, Santos CS, Dantas LL, Santos RP, Matos YG, Pereira AG, Beraldo KRF, Juliano MA, Brandao FZ, Feijo FMC, Franco de Oliveira M, Mota RA, Comizzoli P, Silva AR.	Reprod Fertil	10.1530/raf-25-0072	2025
	Evaluating the potential of Abelmoschus esculentus, Solanum melongena, and Capsicum annuum spp. for nutrient and microbial reduction from wastewater in hybrid constructed wetland.	Abbasi HN, Ahmad W, Shahzad KA, Lu X.	Environ Monit Assess	10.1007/s10661-024-12474-9	2024
	Marine chitinase AfChi: green defense management against Colletotrichum gloeosporioides and anthracnose.	K M R, Raval K, Raval R.	AMB Express	10.1186/s13568-024-01786-1	2024
Enzymology	The 2.5^th generation enzymatic sensors based on the construction of quasi-direct electron transfer type NAD(P)-Dependent dehydrogenases.	Ikegai K, Okuda-Shimazaki J, Tran TT, Hatada M, Asano R, Ikebukuro K, Tsugawa W, Sode K.	Biosens Bioelectron	10.1016/j.bios.2024.116219	2024
Genetics	Whole-genome sequencing of bacteria accountable for lactational mastitis in humans combined with an examination of their antibiotic resistance profiles.	Dalwadi P, Nathani N, Chauhan K, Mansuri J, Koringa P, Bhatt V, Kunjadiya AP.	Braz J Microbiol	10.1007/s42770-024-01519-3	2024
	Killed fungal pathogen triggers antifungal metabolites in Alcaligenes faecalis for plant defense	Ray S, Singh P, Singh J, Singh S, Sarma BK, Singh HB.	Physiol Mol Plant Pathol		2023
	Phosphorus-rich biochar modified with Alcaligenes faecalis to promote U(VI) removal from wastewater: Interfacial adsorption behavior and mechanism.	Wang C, Wang G, Xie S, Dong Z, Zhang L, Zhang Z, Song J, Deng Y.	J Hazard Mater	10.1016/j.jhazmat.2023.131484	2023
	EFFECT OF PENICILLIUM SPECIES ON THE ANTIBIOTIC RESISTANCE PROFILE OF ALCALIGENES FAECALIS.	Samia AS.	Afr J Infect Dis	10.21010/ajidv18i2.2	2024
	Biodegradation of low-density polyethylene (LDPE) through application of indigenous strain Alcaligenes faecalis ISJ128.	Devi D, Gupta KK, Chandra H, Sharma KK, Sagar K, Mori E, de Farias PAM, Coutinho HDM, Mishra AP.	Environ Geochem Health	10.1007/s10653-023-01590-z	2023
Genetics	Functional genomic analysis of an efficient indole degrading bacteria strain Alcaligenes faecalis IITR89 and its biodegradation characteristics.	Regar RK, Singh D, Gaur VK, Thakur RS, Manickam N.	Environ Sci Pollut Res Int	10.1007/s11356-023-25955-0	2023
	Heterotrophic ammonia oxidation by Alcaligenes balances ROS generation and terminal electron transport.	Wang R, Wang X, Zhao Y, Zhao X, Wu T, Wang Y, Li R, Yao J, Jiang C, Qiu JG, Li DF, Liu SJ.	mLife	10.1002/mlf2.70035	2025
	Development of Green-Synthesized Carbon-Based Nanoparticle for Prevention of Surface Wound Biofilm.	Yang M, Li Z.	Appl Biochem Biotechnol	10.1007/s12010-023-04695-4	2024
	The tumoral microbiome of pancreatic intraductal papillary mucinous neoplasm: A single-center retrospective cohort study.	Zou L, Mo S, Jia C, Pang J, Chang X, Chen J.	J Gastroenterol Hepatol	10.1111/jgh.16437	2024
	Exploring the Spectrum of Microbiota in Central Nervous System Infections Through Metagenomic Next-Generation Sequencing.	Wang JM, Pan YY, Hong JC, Jiang ZJ, Zhang SY, Fan RJ, Yang BH, Wang ZQ, Zhu JT, Yao XP.	Infect Drug Resist	10.2147/idr.s552138	2025
	Recent Advances in Chemical Synthesis of Structural Domains of Lipopolysaccharides from the Commensal Gut-Associated Microbiota.	Wang X, Xiao G.	Chembiochem	10.1002/cbic.202300552	2023
Enzymology	Optimising Electrical Interfacing between the Trimeric Copper Nitrite Reductase and Carbon Nanotubes.	Contaldo U, Padrosa DR, Jamet H, Albrecht M, Paradisi F, Le Goff A.	Chemistry	10.1002/chem.202301351	2023
Phylogeny	Quantitative and qualitative analysis of bioaerosols emissions from the domestic eastern wastewater treatment plant, Alexandria, Egypt.	El-Bestawy E, Ibrahim MM, Shalaby ESA.	Sci Rep	10.1038/s41598-024-79645-z	2024
	Antibacterial Potential of Crude Extracts from Cylindrospermum alatosporum NR125682 and Loriellopsis cavernicola NR117881.	Ikhane AO, Osunsanmi FO, Mosa RA, Opoku AR.	Microorganisms	10.3390/microorganisms13010211	2025
	Flavonoids Identified in Terminalia spp. Inhibit Gastrointestinal Pathogens and Potentiate Conventional Antibiotics via Efflux Pump Inhibition.	Zai MJ, Cheesman MJ, Cock IE.	Molecules	10.3390/molecules30112300	2025
	The MocR family transcriptional regulator DnfR has multiple binding sites and regulates Dirammox gene transcription in Alcaligenes faecalis JQ135.	Xu SQ, Wang X, Xu L, Wang KX, Jiang YH, Zhang FY, Hong Q, He J, Liu SJ, Qiu JG.	Environ Microbiol	10.1111/1462-2920.16318	2023
	Characterization of Pseudomonas stutzeri strain AY4 with nitrogen removal and application in wastewater treatment.	Fu W, Li X, Duan P, Zhao Y.	Microbiol Spectr	10.1128/spectrum.03356-24	2025
	In vitro biochemical characterization and identification of hemolytic bacteria associated with life history of Culicoides peregrinus (Diptera: Ceratopogonidae), a vector of bluetongue virus.	Sarkar A, Banerjee P, Kar S, Chatterjee S, Mazumdar A.	J Med Entomol	10.1093/jme/tjad035	2023
	Identification of phytase producing bacteria from acidifying Tithonia diversifolia: Potential for ruminant feed development.	Pazla R, Yanti G, Jamarun N, Zain M, Triani HD, Putri EM, Srifani A.	Saudi J Biol Sci	10.1016/j.sjbs.2024.104006	2024
Pathogenicity	Alcaligenes faecalis promotes colitis to colorectal cancer transition through IgA+ B cell suppression and vinculin acetylation.	Zheng J, Zhou C, Li Z, Jin X, Zou Y, Bai S, Zheng H, Ling W, Zhao Y, Wang Y, Zhang R, Liu Z, Lu L.	Gut Microbes	10.1080/19490976.2025.2473511	2025
	Cloning and expression of the dimethylsulfoniopropionate lyase gene dddY and the identification of the key amino acids necessary for its activity.	Liu Y, Ma F, Zhang H, Chu C, Wang X, Tang Y, He J, Qiu J, Xu S, Li L.	Curr Res Microb Sci	10.1016/j.crmicr.2025.100444	2025
	Enhanced wheat productivity in saline soil through the combined application of poultry manure and beneficial microbes.	Arshad MJ, Khan MI, Ali MH, Farooq Q, Hussain MI, Seleiman MF, Asghar MA.	BMC Plant Biol	10.1186/s12870-024-05137-x	2024
	Quinolinic acid catabolism is initiated by a novel four-component hydroxylase QuiA in Alcaligenes faecalis JQ191.	Zhao L, Zhang F, Wang K, Zhang X, Hu G, Chen E, Qiu J, Yuan C, He J.	Environ Res	10.1016/j.envres.2022.114421	2023
	Nitrogen removal and mechanism of an extremely high-ammonia tolerant heterotrophic nitrification-aerobic denitrification bacterium Alcaligenes faecalis TF-1.	Zhang Q, Zhu Y, Yuan C, Zhang C, Cui M, Zhao T.	Bioresour Technol	10.1016/j.biortech.2022.127643	2022
	Enzyme selection, optimization, and production toward biodegradation of post-consumer poly(ethylene terephthalate) at scale.	Soong YV, Abid U, Chang AC, Ayafor C, Patel A, Qin J, Xu J, Lawton C, Wong HW, Sobkowicz MJ, Xie D.	Biotechnol J	10.1002/biot.202300119	2023
	Detection and Antimicrobial Susceptibility of Carbapenem-Resistant Organisms Isolated in the Center of Care and Protection of Orphan Children, Vietnam.	Van Kim N, Thang TD, Long CT, Ivanovitch K, Baker S, Noisumdaeng P.	Int J Microbiol	10.1155/ijm/3147068	2025
	Characteristics of EPS from Pseudomonas aeruginosa and Alcaligenes faecalis under Cd(II) stress: changes in chemical components and adsorption performance.	Lian Z, Yang Z, Song W, Sun M, Gan Y, Bai X.	Environ Sci Pollut Res Int	10.1007/s11356-022-21114-z	2022
	[Analysis of nasal microbial characteristics in patients with allergic rhinitis and non-allergic rhinitis].	Che YL, Xu ZN, Wang N, Ma QZ, Zheng ZY, Sun YN, Wang JT.	Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi	10.3760/cma.j.cn115330-20221012-00605	2023
	Phylogenetic diversity, distribution, and gene structure of the pyruvic oxime dioxygenase involved in heterotrophic nitrification.	Tsujino S, Masuda R, Shimizu Y, Azuma Y, Kanada Y, Fujiwara T.	Antonie Van Leeuwenhoek	10.1007/s10482-023-01862-9	2023
	Paddy seeds bacterization with ACC deaminase producing endophyte Alcaligenes faecalis SSP8 regulates physiology, leaves gas exchange parameters, PSII photochemistry and antioxidant enzymes metabolism in NaCl stressed seedlings.	Vimal SR, Singh JS, Prasad SM.	Curr Res Microb Sci	10.1016/j.crmicr.2024.100299	2024
	Biodegradation of quinolinic acid by a newly isolated bacterium Alcaligenes faecalis strain JQ191.	Zhao L, Jiang Y, Zhao Z, Wang K, Zhang X, Hong Q, Qiu J, He J.	FEMS Microbiol Lett	10.1093/femsle/fnac040	2022
Genetics	Genomic insights into bla _AFM-positive carbapenem-resistant Pseudomonas aeruginosa in China.	Lu H, Zhang C, Zhao B, Li Y, Qin S.	Front Microbiol	10.3389/fmicb.2025.1546662	2025
Genetics	Sea cucumber (Holothuria glaberrima) intestinal microbiome dataset from Puerto Rico, generated by shotgun sequencing.	Rivera-Lopez EO, Nieves-Morales R, Melendez-Martinez G, Paez-Diaz JA, Rodriguez-Carrio SM, Rodriguez-Ramos J, Morales-Valle L, Rios-Velazquez C.	Data Brief	10.1016/j.dib.2024.110421	2024
	Antibacterial Activity of a Linolenic Acid Stigmasterol Ester Produced by Lipase-Mediated Transesterification.	Kim YA, Kim HK.	J Microbiol Biotechnol	10.4014/jmb.2410.10055	2025
	Complete genome analysis of the novel Alcaligenes faecalis phage vB_AfaP_QDWS595.	Jing Y, Lin H, Ning H, Wang J.	Arch Virol	10.1007/s00705-022-05373-2	2022
	Combined effects of calorie restriction and chronic stress on systemic inflammation and gut microbiota in rats exposed to Leptospira interrogans lipopolysaccharide.	Petakh P, Stravskyy Y, Halabitska I, Pavliuk A, Kamyshnyi O.	Brain Behav Immun Health	10.1016/j.bbih.2025.101121	2025
	New resistance threat in difficult-to-treat resistance Pseudomonas aeruginosa co-producing AFM and KPC carbapenemases: plasmid dynamic transfer and global phylogeography perspective.	Liu H, Yao J, Tian C, Min P, Zhou L, Wu W, Chen M, Moran RA, Yu Y, Li X.	Emerg Microbes Infect	10.1080/22221751.2025.2585632	2025
	Sulphonated azo dye decolorization by Alcaligenes faecalis subsp. phenolicus MB207: Insights from laboratory and computational analysis.	Basharat Z, Yasmin A.	Biophys Chem	10.1016/j.bpc.2022.106806	2022
	Exploring the Antifungal Activity of Moroccan Bacterial and Fungal Isolates and a Strobilurin Fungicide in the Control of Cladosporium fulvum, the Causal Agent of Tomato Leaf Mold Disease.	Belabess Z, Gajjout B, Legrifi I, Barka EA, Lahlali R.	Plants (Basel)	10.3390/plants13162213	2024
	Specificity of Penicillin Acylases in Deprotection of N-Benzyloxycarbonyl Derivatives of Amino Acids.	Morozova IA, Guranda DT, Panin NV, Svedas VK.	Acta Naturae	10.32607/actanaturae.13703	2023
	Right Lower Extremity Osteomyelitis With Alcaligenes faecalis in a Patient With Poorly Controlled Type 2 Diabetes Mellitus.	Smith JC, Comianos M, Tang W, Sarvepalli S.	Cureus	10.7759/cureus.31172	2022
	Antibiotic Profiles and Draft Genome Sequences of Kerstersia gyiorum, Providencia stuartii, Providencia vermicola, and Alcaligenes faecalis Strains Recovered from Soft Tissue Biopsy Samples in Ghana.	Egyir B, Owusu F, Owusu-Nyantakyi C, Amuasi GR, Boateng W, Kodom S, Mohktar Q, Nilsson P, Adu B, Hendriksen RS.	Microbiol Resour Announc	10.1128/mra.00893-22	2023
	Potential bacteriophages to overcome bacterial infection of Alcaligenes faecalis in diabetic ulcer.	Narulita E, Cahyati VIN, Febrianti RA, Iqbal M.	Pediatr Endocrinol Diabetes Metab	10.5114/pedm.2023.125363	2023
Metabolism	Exploring new marine bacterial species, Alcaligenes faecalis Alca F2018 valued for bioconversion of shrimp chitin to chitosan for concomitant biotechnological applications.	Amer OA, Ali SS, Azab M, El-Shouny WA, Sun J, Mahmoud YA.	Int J Biol Macromol	10.1016/j.ijbiomac.2021.12.033	2022
	Urinary tract infection among people living with human immunodeficiency virus attending selected hospitals in Addis Ababa and Adama, central Ethiopia.	Gebremedhin KB, Yisma E, Alemayehu H, Medhin G, Belay G, Bopegamage S, Amogne W, Eguale T.	Front Public Health	10.3389/fpubh.2024.1394842	2024
	Chitosan-based active coating for pineapple preservation: Evaluation of antimicrobial efficacy and shelf-life extension	Basumatary IB, Mukherjee A, Katiyar V, Dutta J, Kumar S.	Lebensm Wiss Technol	10.1016/j.lwt.2022.113940	2022
Enzymology	Design, construction and efficiency analysis of bagasse-based charcoal packed horizontal lab-scale wetland for the removal of antibiotic-resistant bacteria.	Aslam MB, Rehman TUR, Alavi AF, Haleem A, Haq A, Ahmed S, Sajjad W, Bourhia M, Mahamat OB, Almaary KS, Ali M.	BMC Microbiol	10.1186/s12866-025-04061-w	2025
	Optimization of Growth Conditions for Chlorpyrifos-Degrading Bacteria in Farm Soils in Nakuru County, Kenya.	Wepukhulu M, Wachira P, Huria N, Sifuna P, Essuman S, Asamba M.	Biomed Res Int	10.1155/2024/1611871	2024
Phylogeny	Characterizing the urobiome in geriatric males with chronic indwelling urinary catheters: an exploratory longitudinal study.	Stewart E, Hochstedler-Kramer BR, Khemmani M, Clark NM, Parada JP, Farooq A, Doshi C, Wolfe AJ, Albarillo FS.	Microbiol Spectr	10.1128/spectrum.00941-24	2024
	A Rare Case of Meningitis Caused by Alcaligenes faecalis in an Immunocompetent Patient.	Cantillo Garcia K, Calderon Duran O, Acosta Perez T, Vasquez Jimenez A, Madrid Perez E, Martinez-Avila MC, Rodriguez Yanez T, Almanza-Hurtado A.	Case Rep Med	10.1155/2022/1559360	2022
	DipR, a GntR/FadR-family transcriptional repressor: regulatory mechanism and widespread distribution of the dip cluster for dipicolinic acid catabolism in bacteria.	Jiang Y, Wang K, Xu L, Xu L, Xu Q, Mu Y, Hong Q, He J, Jiang J, Qiu J.	Nucleic Acids Res	10.1093/nar/gkae728	2024
	Evidence of dissemination of a clc-type integrative and conjugative element to Stenotrophomonas maltophilia, mediating acquisition of sul1 and other resistance determinants.	Boncompagni SR, Riccobono E, Cusi MG, Di Pilato V, Rossolini GM.	Antimicrob Agents Chemother	10.1128/aac.01554-24	2025
	Microbial profile in bile from pancreatic and extra-pancreatic biliary tract cancer.	Di Carlo P, Serra N, Fasciana TMA, Giammanco A, D'Arpa F, Rea T, Napolitano MS, Lucchesi A, Cascio A, Sergi CM.	PLoS One	10.1371/journal.pone.0294049	2024
	Antibiotic resistance of heterotrophic bacteria from the sediments of adjoining high Arctic fjords, Svalbard.	S V, T J, E AP, A MHA.	Braz J Microbiol	10.1007/s42770-024-01368-0	2024
Phylogeny	Plant growth promoting and antagonistic traits of bacteria isolated from forest soil samples.	Chowhan LB, Mir MI, Sabra MA, El-Habbab AA, Kiran Kumar B.	Iran J Microbiol	10.18502/ijm.v15i2.12480	2023
Phylogeny	Novel antibiotic resistance profiles in bacteria isolated from oil fly larvae Helaeomyia petrolei living in the La Brea Tar Pits.	Durso LM, Shamimuzzaman M, Dillard B, Nickerson KW.	Antonie Van Leeuwenhoek	10.1007/s10482-024-02050-z	2024
	Alcaligenes faecalis metallo-beta-lactamase in extensively drug-resistant Pseudomonas aeruginosa isolates.	Li Y, Zhu Y, Zhou W, Chen Z, Moran RA, Ke H, Feng Y, van Schaik W, Shen H, Ji J, Ruan Z, Hua X, Yu Y.	Clin Microbiol Infect	10.1016/j.cmi.2021.11.012	2022
Genetics	Severe lower limb infection by Kerstersia gyiorum: clinical and genomic insights into an underestimated pathogen.	Qin J, Tang G, Feng Y, Hu X, Liu Y, Lv X, He F.	Front Med (Lausanne)	10.3389/fmed.2025.1639069	2025
	Nanomaterial-mediated strategies for enhancing bioremediation of polycyclic aromatic hydrocarbons: A systematic review.	Gupta N, Koley A, Banerjee S, Ghosh A, Hoque RR, Balachandran S.	Hybrid Adv	10.1016/j.hybadv.2024.100315	2024
	Significant production of vanillin and in vitro amplification of ech gene in local bacterial isolates.	Mazhar B, Jahan N, Chaudhry M, Liaqat I, Dar M, Rehman S, Andleeb S, Ali NM.	Braz J Biol	10.1590/1519-6984.250550	2021
	Phosphate solubilizing epilithic and endolithic bacteria isolated from clastic sedimentary rocks, Murree lower Himalaya, Pakistan.	Khan I, Zada S, Rafiq M, Sajjad W, Zaman S, Hasan F.	Arch Microbiol	10.1007/s00203-022-02946-2	2022
	TLR4 agonist activity of Alcaligenes lipid a utilizes MyD88 and TRIF signaling pathways for efficient antigen presentation and T cell differentiation by dendritic cells.	Sun X, Hosomi K, Shimoyama A, Yoshii K, Lan H, Wang Y, Yamaura H, Nagatake T, Ishii KJ, Akira S, Kiyono H, Fukase K, Kunisawa J.	Int Immunopharmacol	10.1016/j.intimp.2023.109852	2023
	Complete Genome Sequence of Alcaligenes faecalis Phage Piluca.	Wan J, Yu Z, Clark J, Le T, Young R, Liu M.	Microbiol Resour Announc	10.1128/mra.00124-22	2022
	Biodegradation of polyhydroxyalkanoates: current state and future prospects.	Paloyan A, Tadevosyan M, Ghevondyan D, Khoyetsyan L, Karapetyan M, Margaryan A, Antranikian G, Panosyan H.	Front Microbiol	10.3389/fmicb.2025.1542468	2025
	The change of bacterial community structure helped Salvia miltiorrhiza alleviate the pressure of drought stress	Wang H, Wu C, Li X, Jia H, Yan Z.	Front Plant Sci		2025
	Effects of different exogenous cadmium compounds on the chemical composition and adsorption properties of two gram-negative bacterial EPS.	Lian Z, Yang Z, Song W, Sun M, Gan Y, Bai X.	Sci Total Environ	10.1016/j.scitotenv.2021.150511	2022
	Coordinated binding of a two-component insecticidal protein from Alcaligenes faecalis to western corn rootworm midgut tissue.	Perez Ortega C, Leininger C, Barry J, Poland B, Yalpani N, Altier D, Nelson ME, Lu AL.	J Invertebr Pathol	10.1016/j.jip.2021.107597	2021
Genetics	Heritable Tissue-Specific Gene Expression Associates With Chronic Wound Microbial Species.	Omeir K, Ancira J, Gabrilska R, Tipton C, Miller C, Noe A, Subasinghe K, Rowe M, Phillips N, Wolcott J, Philips CD.	Wound Repair Regen	10.1111/wrr.70055	2025
	Hospital wastewater treated with a novel bacterial consortium (Alcaligenes faecalis and Bacillus paramycoides spp.) for phytotoxicity reduction in Berseem clover and tomato crops.	Rashid A, Mirza SA, Keating C, Ali S, Campos LC.	Water Sci Technol	10.2166/wst.2021.079	2021
	Nitrogen removal characteristics of a novel heterotrophic nitrification and aerobic denitrification bacteria, Alcaligenes faecalis strain WT14.	Chen J, Xu J, Zhang S, Liu F, Peng J, Peng Y, Wu J.	J Environ Manage	10.1016/j.jenvman.2021.111961	2021
Pathogenicity	Fungal beta-Glucans Shape Innate Immune Responses in Human Peripheral Blood Mononuclear Cells (PBMCs): An In Vitro Study on PRR Regulation, Cytokine Expression, and Oxidative Balance.	Kozlowska E, Agier J, Rozalska S, Jurczak M, Goralczyk-Binkowska A, Zelechowska P.	Int J Mol Sci	10.3390/ijms26136458	2025
	Constitutive secretory expression and characterization of nitrilase from Alcaligenes faecalis in Pichia pastoris for production of R-mandelic acid.	Zhang X, Wang C, Ge Y, Meng Q, Zhang Y.	Biotechnol Appl Biochem	10.1002/bab.2135	2022
Metabolism	Heterotrophic nitrification and related functional gene expression characteristics of Alcaligenes faecalis SDU20 with the potential use in swine wastewater treatment.	Chen L, Chen L, Pan D, Lin H, Ren Y, Zhang J, Zhou B, Lin J, Lin J.	Bioprocess Biosyst Eng	10.1007/s00449-021-02581-z	2021
	Enhancing rice growth and yield with weed endophytic bacteria Alcaligenes faecalis and Metabacillus indicus under reduced chemical fertilization.	Fatema K, Mahmud NU, Gupta DR, Siddiqui MN, Sakif TI, Sarker A, Sharpe AG, Islam T.	PLoS One	10.1371/journal.pone.0296547	2024
	Repurposing the Anticancer Drug Cisplatin for Antibacterial Therapy: Evaluating Its Efficacy Against Pseudomonas aeruginosa Infections.	Daghistani H, Attallah D, Alqarni MA, Saleh BH, Alhussainy NH, Sait AM, Mufrrih M, Alhazmi W, Alharbi OS, Alhazmi KA, Altalhi R, Halabi WS, Almuhayya S, Aldehalan FA, Altarawneh H, Abu Lubad M, Bani Abdel-Rahman SMS, Alfadil A, Ibrahem K.	Infect Drug Resist	10.2147/idr.s524005	2025
Phylogeny	Production of extracellular L-arginase by Alcaligenes aquatilis BC2 isolated from soda lakes (Lake Chitu) of Ethiopia.	Assega BG, Getahun KA, Milkessa T, Yohannes TG, Moges F, Aemero M, Andualem B.	J Ind Microbiol Biotechnol	10.1093/jimb/kuaf017	2024
	Structural characterization of pyruvic oxime dioxygenase, a key enzyme in heterotrophic nitrification.	Tsujino S, Yamada Y, Senda M, Nakamura A, Senda T, Fujiwara T.	J Bacteriol	10.1128/jb.00342-24	2025
	Indigenous Bacillus paramycoides spp. and Alcaligenes faecalis: sustainable solution for bioremediation of hospital wastewater.	Rashid A, Mirza SA, Keating C, Ali S, Campos LC.	Environ Technol	10.1080/09593330.2020.1858180	2022
	Heterotrophic nitrification by Alcaligenes faecalis links organic and inorganic nitrogen metabolism.	Qin YL, Liang ZL, Ai GM, Liu WF, Tao Y, Jiang CY, Liu SJ, Li DF.	ISME J	10.1093/ismejo/wrae174	2024
	Nanosponge hydrogel of octadecyl 3-(3,5-di-tert-butyl-4-hydroxyphenyl) propanoate of Alcaligenes faecalis.	El-Sayed SE, Abdelaziz NA, El-Housseiny GS, Aboshanab KM.	Appl Microbiol Biotechnol	10.1007/s00253-023-12819-3	2024
	Microbiological analysis of skin lesions of cod (Gadus morhua) from the southern part of the Baltic Sea.	Pekala-Safinska A, Nadolna-Altyn K, Rozycki M, Pazdzior E, Cencek T, Podolska M.	J Vet Res	10.2478/jvetres-2024-0004	2024
	Evolution of XDR Pseudomonas aeruginosa ST463 strains with two plasmids harboring multiple antimicrobial resistance genes.	Fang Y, Song M, Zhang Y, Wu Z, Li X, Guo Y, Wang N, Hua X, Yu Y.	Antimicrob Agents Chemother	10.1128/aac.01697-24	2025
	A type VI secretion system in Burkholderia species cenocepacia and orbicola triggers distinct macrophage death pathways independent of the pyrin inflammasome.	Loeven NA, Dabi C, Pennington JP, Reuven AD, McGee AP, Mwaura BW, Bliska JB.	Infect Immun	10.1128/iai.00316-24	2024
	A electrochemical biosensor for As(III) detection based on the catalytic activity of Alcaligenes faecalis immobilized on a gold nanoparticle-modified screen-printed carbon electrode.	Nunez C, Trivino JJ, Arancibia V.	Talanta	10.1016/j.talanta.2020.121702	2021
	Endophytic Alcaligenes faecalis mediated redesigning of host defense itinerary against Sclerotium rolfsii through induction of phenolics and antioxidant enzymes	Ray S, Swapnil P, Singh P, Singh S, Sarma BK, Singh HB.	Biol Control	10.1016/j.biocontrol.2020.104355	2020
	From Plant Material to Environmentally Friendly Plant Growth Stimulators: Betaine-Based Ionic Liquids.	Olejniczak A, Niemczak M, Gwiazdowska D, Jus K, Mezzetta A, Guazzelli L, Kaczmarek DK.	ACS Sustain Chem Eng	10.1021/acssuschemeng.5c04882	2025
	Octadecyl 3-(3, 5-di-tert-butyl-4-hydroxyphenyl) propanoate, an antifungal metabolite of Alcaligenes faecalis strain MT332429 optimized through response surface methodology.	El-Sayed SE, Abdelaziz NA, El-Housseiny GS, Aboshanab KM.	Appl Microbiol Biotechnol	10.1007/s00253-020-10962-9	2020
	Optimizing laccase selection for enhanced outcomes: a comprehensive review.	Abdi Dezfouli R, Esmaeilidezfouli E.	3 Biotech	10.1007/s13205-024-04015-5	2024
	Identification of natural pathogens from wild Drosophila suzukii.	Bing XL, Winkler J, Gerlach J, Loeb G, Buchon N.	Pest Manag Sci	10.1002/ps.6235	2021
	Elevated level of beta-D-glucan in Pseudomonas infection.	Shrestha K, Kadkhoda K.	IDCases	10.1016/j.idcr.2024.e01931	2024
	The immobilized Alcaligenes faecalis strain WT14 for removing high strength nitrate and reducing nitrite accumulation.	Chen J, Zhang S, Liu F, Luo P, Xiao R, Zhang M, Wu J.	Environ Technol	10.1080/09593330.2020.1780476	2022
	Characteristics and Mechanism of Ammonia Nitrogen Removal by Heterotrophic Nitrification Bacterium Klebsiella pneumoniae LCU1 and Its Application in Wastewater Treatment.	Xu M, Chen L, Xin Y, Wang X, Wang Z, Meng X, Zhang W, Sun H, Li Y, Zhang W, Wan P, Geng B, Li L.	Microorganisms	10.3390/microorganisms13020297	2025
	Characterization of bla_AFM-1-positive carbapenem-resistant strains isolated in Guangzhou, China.	Qin Y, Peng Y, Duan X, Song Z, Huang R, Rui Y.	Ann Clin Microbiol Antimicrob	10.1186/s12941-023-00592-0	2023
Pathogenicity	Catechin as the Most Efficient Bioactive Compound from Azadirachta indica with Antibiofilm and Anti-quorum Sensing Activities Against Dental Biofilm: an In Vitro and In Silico Study.	Lahiri D, Nag M, Dutta B, Mukherjee I, Ghosh S, Dey A, Banerjee R, Ray RR.	Appl Biochem Biotechnol	10.1007/s12010-021-03511-1	2021
Pathogenicity	First whole genome sequence of Paenalcaligenes suwonensis bearing bla_VIM-5 Metallo-beta-lactamase: A clinical isolate responsible for acute gastroenteritis.	Olowo-Okere A, Ibrahim YKE, Olayinka BO, Ehinmidu JO, Mohammed Y, Nabti LZ, Rolain JM, Diene SM.	Infect Genet Evol	10.1016/j.meegid.2020.104513	2020
	Investigation of Bacterial Infections and Antibiotic Resistance Patterns Among Clinical Isolates in the Center of Iran.	Naseri S, Sadeh M, Fatahi-Bafghi M, Vakili M.	Int J Microbiol	10.1155/ijm/4694690	2025
	Successful Treatment of an AML Patient Infected with Hypervirulent ST463 Pseudomonas Aeruginosa Harboring Rare Carbapenem-Resistant Genes blaAFM-1 and blaKPC-2 Following Allogeneic Hematopoietic Stem Cell Transplantation.	Shen Y, Cao J, Hu T, Yang X, Zhao Y, Shen Y, Ye B, Yu Y, Wu D.	Infect Drug Resist	10.2147/idr.s455746	2024
	Antimicrobial activity of a standardized medical honey on bacterial isolates from infected skin lesions of non-traditional companion animals.	Cabassi CS, Bertocchi M, Spadini C, Denti L, Flisi S, Schiano E, Cavirani S, Parmigiani E, Taddei S.	Vet Ital	10.12834/vetit.1964.12937.1	2021
	Multiple Chronic Wounds in an Immunocompetent Patient With Severe Major Depressive Disorder: A Case Report.	Tito E, Kalyani R, Halilu F, Tita L, Kafando I.	Cureus	10.7759/cureus.77667	2025
	A cross sectional study on airborne inhalable microorganisms, endotoxin, and particles in pigeon coops - Risk assessment of exposure.	Madsen AM, White JK, Nielsen JL, Keskin ME, Tendal K, Frederiksen MW.	Environ Res	10.1016/j.envres.2021.112404	2022
	Biodeterioration of Microplastics: A Promising Step towards Plastics Waste Management.	Tareen A, Saeed S, Iqbal A, Batool R, Jamil N.	Polymers (Basel)	10.3390/polym14112275	2022
Metabolism	Plant Probiotic Bacterial Endophyte, Alcaligenes faecalis, Modulates Plant Growth and Forskolin Biosynthesis in Coleus forskohlii.	Mastan A, Rane D, Dastager SG, Vivek Babu CS.	Probiotics Antimicrob Proteins	10.1007/s12602-019-09582-1	2020
Enzymology	Terminator: A Software Package for Fast and Local Optimization of His-Tag Placement for Protein Affinity Purification	Gerulskis R, Minteer S.	ACS Bio Med Chem Au		2025
	Lanthanide bioadsorption by the extremophile Exiguobacterium sp.: utilizing microbial extracellular polysaccharides for high-value element recovery.	Gallardo K, Serrano G, Castillo R, Michea S, Urzua JI, Arias D, Remonsellez F.	Front Microbiol	10.3389/fmicb.2025.1575677	2025
Enzymology	Whole Proteome-Based Therapeutic Targets Annotation and Designing of Multi-Epitope-Based Vaccines against the Gram-Negative XDR-Alcaligenes faecalis Bacterium.	Alharbi M, Alshammari A, Alasmari AF, Alharbi S, Tahir Ul Qamar M, Abbasi SW, Shaker B, Ahmad S.	Vaccines (Basel)	10.3390/vaccines10030462	2022
	The Long-Range High-pH Proton Channel Facilitates the Nitrite Reduction in Copper-Containing Nitrite Reductase.	Qin X, Li L, Zhou Q, Chen X.	ACS Omega	10.1021/acsomega.5c06351	2025
	Diversity of bioprotective microbial organisms in Upper Region of Assam and its efficacy against Meloidogyne graminicola.	Jena R, Choudhury B, Das D, Bhagawati B, Borah PK, Prabhukartikeyan SR, Singh S, Mahapatra M, Lal MK, Tiwari RK, Kumar R.	PeerJ	10.7717/peerj.15779	2023
	Antimicrobial susceptibility of bacterial pathogens isolated from healthcare workers' cellphones.	Bayraktar M, Kaya E, Ozturk A, Ibahim BMS.	Infect Dis Now	10.1016/j.idnow.2021.05.007	2021
	Plant-Growth-Promoting Rhizobacteria Improve Seeds Germination and Growth of Argania spinosa.	Chabbi N, Chafiki S, Telmoudi M, Labbassi S, Bouharroud R, Tahiri A, Mentag R, El Amri M, Bendiab K, Hsissou D, Mimouni A, Ait Aabd N, Qessaoui R.	Plants (Basel)	10.3390/plants13152025	2024
	Chemoenzymatic valorization of agricultural wastes into 4-hydroxyvaleric acid via levulinic acid.	Moon M, Yeon YJ, Park HJ, Park J, Park GW, Kim GH, Lee JP, Lee D, Lee JS, Min K.	Bioresour Technol	10.1016/j.biortech.2021.125479	2021
	Alcaligenes faecalis corrects aberrant matrix metalloproteinase expression to promote reepithelialization of diabetic wounds.	White EK, Uberoi A, Pan JT, Ort JT, Campbell AE, Murga-Garrido SM, Harris JC, Bhanap P, Wei M, Robles NY, Gardner SE, Grice EA.	Sci Adv	10.1126/sciadv.adj2020	2024
Biotechnology	Assessment of antibiofilm and quorum quenching potencies of environmental bacteria in controlling biofilm of food spoilage bacteria.	Charen C, Waturangi DE.	BMC Res Notes	10.1186/s13104-025-07141-2	2025
	Long-Term Treatment with Alcaligenes faecalis A12C Improves Host Resistance to Pathogens in Septic Rats: Possible Contribution of Curdlan-Like Immune Trainer.	Martel-Benitez CJ, Alayon-Afonso R, Castillo DP, Chamizo-Lopez FJ, Garcia-Laorden MI, de Los Monteros Y Zayas AE, Rivero-Vera JC, Salgueiro PN, Real F, Bordes-Benitez A, Quintana AM, Pena CA, Cabrera CD, Gonzalez-Martin JM, Caballero JM, Beneyto RF, Villar J, Martin-Barrasa JL.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10252-0	2025
	Multidrug-Resistant Bacteria in Hospital Wastewater of the Korle Bu Teaching Hospital in Accra, Ghana.	Addae-Nuku DS, Kotey FC, Dayie NT, Osei MM, Tette EM, Debrah P, Donkor ES.	Environ Health Insights	10.1177/11786302221130613	2022
Genetics	Identification of mobile colistin resistance genes (mcr-1.1, mcr-5 and mcr-8.1) in Enterobacteriaceae and Alcaligenes faecalis of human and animal origin, Nigeria.	Ngbede EO, Poudel A, Kalalah A, Yang Y, Adekanmbi F, Adikwu AA, Adamu AM, Mamfe LM, Daniel ST, Useh NM, Kwaga JKP, Adah MI, Kelly P, Butaye P, Wang C.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2020.106108	2020
	Expression and Characterization of 3,6-Dihydroxy-picolinic Acid Decarboxylase PicC of Bordetella bronchiseptica RB50.	Yuan C, Zhao L, Tong L, Wang L, Ke Z, Yang Y, He J.	Microorganisms	10.3390/microorganisms11040854	2023
	Environmental Sources of Possible Associated Pathogens and Contaminants of Stingless Bees in the Neotropics.	Ocana-Cabrera JS, Martin-Solano S, Saegerman C.	Insects	10.3390/insects16040350	2025
	Alkaline pH and enhanced catalase activity improve the in vitro bio-remediation of crude-oil polluted soil.	Omenna EC, Omage K, Azeke MA.	Sci Rep	10.1038/s41598-025-21353-3	2025
	Microbial ecology of sandflies-the correlation between nutrition, Phlebotomus papatasi sandfly development and microbiome.	Vaselek S, Alten B.	Front Vet Sci	10.3389/fvets.2024.1522917	2024
	Bacteria contamination analysis on the hands and bowls of meatball cart vendors: an observational descriptive study.	Amqam H, Natsir MF, Thamrin Y, Gunawan NA, Sari IY, Hermawati E.	Gac Sanit	10.1016/j.gaceta.2020.12.020	2021
	Characterization of T-cell immune responses against Staphylococcus chromogenes naturally-induced subclinical mastitis in dairy cows.	Yu C, Wu J, Zhang S, Ye C, Wei G, Yang Z, Zhang Z.	Front Immunol	10.3389/fimmu.2025.1679963	2025
	Synergistic effect of endophytic selenobacteria on biofortification and growth of Glycine max under drought stress	Trivedi G, Patel P, Saraf M.	S Afr J Bot		2020
Pathogenicity	A Newly Isolated Alcaligenes faecalis ANSA176 with the Capability of Alleviating Immune Injury and Inflammation through Efficiently Degrading Ochratoxin A.	Zheng R, Qing H, Ma Q, Huo X, Huang S, Zhao L, Zhang J, Ji C.	Toxins (Basel)	10.3390/toxins14080569	2022
Genetics	Whole-genome sequencing of Alcaligenes sp. strain MMA: insight into the antibiotic and heavy metal resistant genes.	Sodhi KK, Singh CK, Kumar M, Singh DK.	Front Pharmacol	10.3389/fphar.2023.1144561	2023
	Multiomics-based analysis of the mechanism of ammonia reduction in Sphingomonas.	Mingcheng W, Daoqi L, Huili X, Gailing W, Chaoying L, Yanan G, Aizhen G.	Front Microbiol	10.3389/fmicb.2024.1437056	2024
	Rhizobacterial community of Jatropha curcas associated with pyrene biodegradation by consortium of PAH-degrading bacteria	Singha LP, Pandey P.	Appl Soil Ecol	10.1016/j.apsoil.2020.103685	2020
Metabolism	Biodegradation of the Insecticide Flonicamid by Alcaligenes faecalis CGMCC 17553 via Hydrolysis and Hydration Pathways Mediated by Nitrilase.	Yang WL, Guo LL, Dai ZL, Qin RC, Zhao YX, Dai YJ.	J Agric Food Chem	10.1021/acs.jafc.9b04245	2019
	Polyhydroxyalkanoate (PHA) Biopolymer Synthesis by Marine Bacteria of the Malaysian Coral Triangle Region and Mining for PHA Synthase Genes.	Alsaadi A, Ganesen SSK, Amelia TSM, Moanis R, Peeters E, Vigneswari S, Bhubalan K.	Microorganisms	10.3390/microorganisms10102057	2022
	Mycobacterium ulcerans-Bordetella trematum chronic tropical cutaneous ulcer: A four-case series, Côte d'Ivoire.	Tchan BGO, Kakou-Ngazoa S, Dizoe S, Hammoudi N, Grine G, Ruimy R, Drancourt M.	PLoS Negl Trop Dis	10.1371/journal.pntd.0011413	2023
Phylogeny	A case of Bordetella trematum and Kerstersia gyiorum infections in a patient with congestive dermatitis.	Kitagawa D, Kurimoto T, Oyama S, Suzuki S, Masuo K, Suzuki Y, Nakano R, Sato M, Yano H, Maeda K, Nomi K, Nakamura F.	J Infect Chemother	10.1016/j.jiac.2020.12.008	2021
Metabolism	Bioremediation potential of select bacterial species for the neonicotinoid insecticides, thiamethoxam and imidacloprid.	Zamule SM, Dupre CE, Mendola ML, Widmer J, Shebert JA, Roote CE, Das P.	Ecotoxicol Environ Saf	10.1016/j.ecoenv.2020.111814	2021
Genetics	Genome-scale metabolic modelling of human gut microbes to inform rational community design.	Molina Ortiz JP, McClure DD, Holmes A, Rice SA, Read MN, Shanahan ER.	Gut Microbes	10.1080/19490976.2025.2534673	2025
	Gelling Characteristics and Mechanisms of Heat-Triggered Soy Protein Isolated Gels Incorporating Curdlan with Different Helical Conformations.	Long PW, Liu SY, Lin YX, Mo LF, Wu Y, Li LQ, Pan LY, Jin MY, Yan JK.	Foods	10.3390/foods14142484	2025
	PTA-DFS study: design of a randomised controlled trial assessing the effects of early percutaneous transluminal angioplasty on the healing of diabetic foot ulcers in persons with type 2 diabetes.	Bodis KB, Florea DI, Goh S, Kramser N, Wienemann T, Binsch C, Stern M, Pfeffer K, Kelm M, Roden M, Wagner R, Busch L, Wischmann P, PTA-DFS Study Group.	BMC Cardiovasc Disord	10.1186/s12872-025-05288-1	2025
	Biocontrol activity and putative mechanism of Bacillus amyloliquefaciens (SF14 and SP10), Alcaligenes faecalis ACBC1, and Pantoea agglomerans ACBP1 against brown rot disease of fruit.	Lahlali R, Aksissou W, Lyousfi N, Ezrari S, Blenzar A, Tahiri A, Ennahli S, Hrustic J, MacLean D, Amiri S.	Microb Pathog	10.1016/j.micpath.2019.103914	2020
Phylogeny	Plant growth promoting and antifungal asset of indigenous rhizobacteria secluded from saffron (Crocus sativus L.) rhizosphere.	Rasool A, Imran Mir M, Zulfajri M, Hanafiah MM, Azeem Unnisa S, Mahboob M.	Microb Pathog	10.1016/j.micpath.2021.104734	2021
	Rare but Fatal Case of Cavitary Pneumonia Caused by Alcaligenes Faecalis.	Al-Zakhari R, Suhail M, Ataallah B, Aljammali S, Grigos A.	Cureus	10.7759/cureus.8934	2020
Enzymology	Infective endocarditis caused by Alcaligenes faecalis complicated with skin lesions.	Vogiatzis I, Koutsampasopoulos K.	Anatol J Cardiol	10.14744/anatoljcardiol.2019.10576	2019
	Enterobacteriaceae in Sewage Sludge and Digestate Intended for Soil Fertilization.	Wojcik-Fatla A, Farian E, Kowalczyk K, Sroka J, Skowron P, Siebielec G, Zdybel JM, Jadczyszyn T, Cencek T.	Pathogens	10.3390/pathogens13121056	2024
	Physicochemical and molecular characterization of heavy metal-tolerant bacteria isolated from soil of mining sites in Nigeria.	Ibrahim UB, Kawo AH, Yusuf I, Yahaya S.	J Genet Eng Biotechnol	10.1186/s43141-021-00251-x	2021
	The Novel Monooxygenase Gene dipD in the dip Gene Cluster of Alcaligenes faecalis JQ135 Is Essential for the Initial Catabolism of Dipicolinic Acid.	Mu Y, Xu S, Liu G, Cheng M, Dai W, Chen Q, Yan X, Hong Q, He J, Jiang J, Qiu J.	Appl Environ Microbiol	10.1128/aem.00360-22	2022
	Activity of alkanmonooxygenase alkB gene in strains of hydrocarbon-oxidizing bacteria isolated from petroleum products.	Shapiro TN, Manucharova NA, Lobakova ES.	Vavilovskii Zhurnal Genet Selektsii	10.18699/vjgb-22-70	2022
	Plasmid-Borne AFM Alleles in Pseudomonas aeruginosa Clinical Isolates from China.	Chen M, Cai H, Li Y, Wang N, Zhang P, Hua X, Yu Y, Sun R.	Microbiol Spectr	10.1128/spectrum.02035-22	2022
	L-glutaminase synthesis by Klebsiella pneumoniae (AS KP 23) isolated from clinical strain, and its efficacy against human hepatocellular and breast cancer cell lines.	Abdel-Hafez LJ, Elariny EYT, Ibrahim AE, Abdel-Haliem MEF.	BMC Microbiol	10.1186/s12866-025-03773-3	2025
	Artificial cellulose derivatives are metabolized by select human gut Bacteroidota upon priming with common plant beta-glucans.	Panwar D, Stewart WA, Rodd A, Brumer H.	J Bacteriol	10.1128/jb.00198-25	2025
	Combination of Sodium Bicarbonate (SBC) with Bacterial Antagonists for the Control of Brown Rot Disease of Fruit.	Lyousfi N, Letrib C, Legrifi I, Blenzar A, El Khetabi A, El Hamss H, Belabess Z, Barka EA, Lahlali R.	J Fungi (Basel)	10.3390/jof8060636	2022
Metabolism	Treatment of concentrated leachate with low greenhouse gas emission in two-stage membrane bioreactor bio-augmented with Alcaligenes faecalis no. 4.	Nuansawan N, Chiemchaisri C, Chiemchaisri W, Shoda M.	J Air Waste Manag Assoc	10.1080/10962247.2018.1516701	2018
	Isolation of Acanthamoeba Species and Bacterial Symbiont Variability in Puna Salt Plains, Argentina.	Mooney R, Rodgers K, Carnicelli S, Carnevale ME, Farias ME, Henriquez FL.	Environ Microbiol Rep	10.1111/1758-2229.70059	2025
Enzymology	Penicillin G acylase production by Mucor griseocyanus and the partial genetic analysis of its pga gene.	Cano-Cabrera JC, Palomo-Ligas L, Flores-Gallegos AC, Martinez-Hernandez JL, Rodriguez-Herrera R.	Int Microbiol	10.1007/s10123-020-00137-x	2021
	Microbiome diversity in mosquitoes and sand flies: implications for vector competence.	Ragini G, Mani MK, Sharma R, Bharadwaj N, Subramanian M, Nagarajan SA, Rahi M.	Parasit Vectors	10.1186/s13071-025-06964-z	2025
Pathogenicity	Extensively drug-resistant Alcaligenes faecalis infection.	Huang C.	BMC Infect Dis	10.1186/s12879-020-05557-8	2020
Phylogeny	Microbial composition on microplastics mediated by stream impairment.	Gilewski AL, Shrestha S, Kahara SN, Stasulli NM.	Environ Microbiome	10.1186/s40793-025-00685-7	2025
	Potential for Biological Control of Pythium schmitthenneri Root Rot Disease of Olive Trees (Olea europaea L.) by Antagonistic Bacteria.	Legrifi I, Al Figuigui J, El Hamss H, Lazraq A, Belabess Z, Tahiri A, Amiri S, Barka EA, Lahlali R.	Microorganisms	10.3390/microorganisms10081635	2022
	Insight into the microbiology of nitrogen cycle in the dairy manure composting process revealed by combining high-throughput sequencing and quantitative PCR.	Zhong XZ, Zeng Y, Wang SP, Sun ZY, Tang YQ, Kida K.	Bioresour Technol	10.1016/j.biortech.2020.122760	2020
	The TetR Family Repressor HpaR Negatively Regulates the Catabolism of 5-Hydroxypicolinic Acid in Alcaligenes faecalis JQ135 by Binding to Two Unique DNA Sequences in the Promoter of Hpa Operon.	Xu S, Jiang Y, Zhang F, Wang X, Zhang K, Zhao L, Hong Q, Qiu J, He J.	Appl Environ Microbiol	10.1128/aem.02390-21	2022
Genetics	Genomic and resistome analysis of Alcaligenes faecalis strain PGB1 by Nanopore MinION and Illumina Technologies.	Lang J, Li Y, Yang W, Dong R, Liang Y, Liu J, Chen L, Wang W, Ji B, Tian G, Che N, Meng B.	BMC Genomics	10.1186/s12864-022-08507-7	2022
	Chronic wounds in Sierra Leone: pathogen spectrum and antimicrobial susceptibility.	Schaumburg F, Vas Nunes J, Monnink G, Falama AM, Bangura J, Matheron H, Conteh A, Sesay M, Sesay A, Grobusch MP.	Infection	10.1007/s15010-022-01762-6	2022
Pathogenicity	Antibiotic susceptibility of cultivable aerobic microbiota from the oral cavity of Echis carinatus from Odisha (India).	Padhi L, Panda SK, Mohapatra PP, Sahoo G.	Microb Pathog	10.1016/j.micpath.2020.104121	2020
Metabolism	Contrasting Methane, Sulfide and Nitrogen-Loading Regimes in Bioreactors Shape Microbial Communities Originating From Methane-Rich Coastal Sediment of the Stockholm Archipelago.	Echeveste Medrano MJ, Smith GJ, Sanchez-Andrea I, Jetten MSM, Welte CU.	Environ Microbiol	10.1111/1462-2920.70056	2025
Enzymology	Kinetic analysis of curdlan production by Alcaligenes faecalis with maltose, sucrose, glucose and fructose as carbon sources.	Zhang Q, Sun J, Wang Z, Hang H, Zhao W, Zhuang Y, Chu J.	Bioresour Technol	10.1016/j.biortech.2018.03.059	2018
Enzymology	Sustainable biosynthesis of curdlan from orange waste by using Alcaligenes faecalis: A systematically modeled approach.	Mohsin A, Sun J, Khan IM, Hang H, Tariq M, Tian X, Ahmed W, Niazi S, Zhuang Y, Chu J, Mohsin MZ, Salim-Ur-Rehman, Guo M.	Carbohydr Polym	10.1016/j.carbpol.2018.10.047	2019
	Molecular characterization of chlorpyrifos degrading bacteria isolated from contaminated dairy farm soils in Nakuru County, Kenya.	Asamba MN, Mugendi EN, Oshule PS, Essuman S, Chimbevo LM, Atego NA.	Heliyon	10.1016/j.heliyon.2022.e09176	2022
Pathogenicity	Safe-by-Design of Glucan Nanoparticles: Size Matters When Assessing the Immunotoxicity.	Colaco M, Marques AP, Jesus S, Duarte A, Borges O.	Chem Res Toxicol	10.1021/acs.chemrestox.9b00467	2020
	Misidentification of Acinetobacter baumannii as Alcaligenes faecalis by VITEK 2 System; Case Report.	Kim S, Kim MH, Lee WI, Kang SY, Jeon Y.	Lab Med	10.1093/labmed/lmx062	2017
	Correction: Wang, Y.T., et al. Selenite Reduction and the Biogenesis of Selenium Nanoparticles by Alcaligenes faecalis Se03 Isolated from the Gut of Monochamus alternatus (Coleoptera: Cerambycidae). Int. J. Mol. Sci. 2018, 19, 2799.	Wang Y, Shu X, Zhou Q, Fan T, Wang T, Chen X, Li M, Ma Y, Ni J, Hou J, Zhao W, Li R, Huang S, Wu L.	Int J Mol Sci	10.3390/ijms21041294	2020
Metabolism	Biodegradation of anionic surfactants by Alcaligenes faecalis, Enterobacter cloacae and Serratia marcescens strains isolated from industrial wastewater.	Fedeila M, Hachaichi-Sadouk Z, Bautista LF, Simarro R, Nateche F.	Ecotoxicol Environ Saf	10.1016/j.ecoenv.2018.07.123	2018
	Functional and safety profiles of microbial communities in milk of ranched and nomadic goats and their predictive role in mycotoxin reduction.	Akinyemi MO, Kleyn MS, Abdelmaksoud M, Van Wyk DAB, Adeleke RA, Ezekiel CN.	World J Microbiol Biotechnol	10.1007/s11274-025-04507-3	2025
Metabolism	Complete Genome Sequence of Alcaligenes Faecalis Strain JQ135, a Bacterium Capable of Efficiently Degrading Nicotinic Acid.	Zhang Y, Chen Q, Ji J, Zhao L, Zhang L, Qiu J, He J.	Curr Microbiol	10.1007/s00284-018-1486-0	2018
	Detection of Inflammatory Biomarkers Among Patients with Sepsis of Gram-Negative Bacteria: A Cross-Sectional Study.	Khana TQ, Anwar KA.	Int J Gen Med	10.2147/ijgm.s415200	2023
Phylogeny	The First Lethal Infection by Oligella ureolytica: A Case Report and Review of the Literature.	Serandour P, Plouzeau C, Michaud A, Broutin L, Cremniter J, Burucoa C, Pichon M.	Antibiotics (Basel)	10.3390/antibiotics12091470	2023
	Minocycline Activity against Unusual Clinically Significant Gram-Negative Pathogens.	Shortridge D, Arends SJR, Streit JM, Castanheira M.	Antimicrob Agents Chemother	10.1128/aac.01264-21	2021
	Environmental Microbiome of Tyrophagus Putrescentiae Culture and Its Changes in Manipulative Experiments.	Hubert J, Sopko B, Glowska-Patyniak E.	Environ Microbiol Rep	10.1111/1758-2229.70142	2025
	Optimizing enzyme thermostability by combining multiple mutations using protein language model.	Bian J, Tan P, Nie T, Hong L, Yang GY.	mLife	10.1002/mlf2.12151	2024
Enzymology	Combined spectroelectrochemical and proteomic characterizations of bidirectional Alcaligenes faecalis-electrode electron transfer.	Yu L, Yuan Y, Rensing C, Zhou S.	Biosens Bioelectron	10.1016/j.bios.2018.01.032	2018
	Monitoring the Biodegradation Progress of Naphthenic Acids in the Presence of Spirulina platensis Algae.	Gheorghe CG, Dusescu-Vasile CM, Popovici DR, Bombos D, Dragomir RE, Dima FM, Bajan M, Vasilievici G.	Toxics	10.3390/toxics13050368	2025
	Microbiota in a cooling-lubrication circuit and an option for controlling triethanolamine biodegradation.	Klammsteiner T, Insam H, Probst M.	Biofouling	10.1080/08927014.2018.1468887	2018
	Study on the rooting promotion of chrysanthemum cuttings by Massilia consociata KC 009.	Lu C, Dong H, Jiao Y, Muhammad M, Yang Y, Zhang J, Liu R, Cao Y.	Front Plant Sci	10.3389/fpls.2025.1685038	2025
Genetics	A Metagenomic Nanopore Sequence Analysis Combined with Conventional Screening and Spectroscopic Methods for Deciphering the Antimicrobial Metabolites Produced by Alcaligenes faecalis Soil Isolate MZ921504.	Eltokhy MA, Saad BT, Eltayeb WN, El-Ansary MR, Aboshanab KM, Ashour MSE.	Antibiotics (Basel)	10.3390/antibiotics10111382	2021
	Mycobacterium nebraskense Isolated from Patients in Connecticut and Oregon, USA.	Metersky ML, Losier AJ, Fraulino DA, Warnock TA, Varley CD, Le AM, Winthrop KL, McArdle JR, Shakir SM, Khare R.	Emerg Infect Dis	10.3201/eid3103.240608	2025
	Anti-biofilm efficacy of green-synthesized ZnO nanoparticles on oral biofilm: In vitro and in silico study.	Lahiri D, Ray RR, Sarkar T, Upadhye VJ, Ghosh S, Pandit S, Pati S, Edinur HA, Abdul Kari Z, Nag M, Ahmad Mohd Zain MR.	Front Microbiol	10.3389/fmicb.2022.939390	2022
	PicR as a MarR Family Transcriptional Repressor Multiply Controls the Transcription of Picolinic Acid Degradation Gene Cluster pic in Alcaligenes faecalis JQ135.	Xu S, Wang X, Zhang F, Jiang Y, Zhang Y, Cheng M, Yan X, Hong Q, He J, Qiu J.	Appl Environ Microbiol	10.1128/aem.00172-22	2022
	Design of Plastic Binding Lytic Polysaccharide Monooxygenases via Modular Engineering.	Munzone A, Pujol M, Badjoudj M, Haon M, Grisel S, Magueresse A, Durand S, Beaugrand J, Berrin JG, Bissaro B.	Chem Bio Eng	10.1021/cbe.4c00125	2024
	Composition and diversity of endophytic bacterial communities in the tubers of Pinellia ternata from different regions and their effects on succinate biosynthesis based on high-throughput sequencing.	Zhang P, Ding W, Zheng H.	3 Biotech	10.1007/s13205-024-04108-1	2024
	Alcaligenes faecalis Cellulitis After a Dog Bite: Case Report and Literature Review.	Chu AS, Harkness J.	Pediatr Emerg Care	10.1097/pec.0000000000000645	2017
Enzymology	Identification, Growth Profile and Probiotic Properties of Autochthonous Intestinal Bacteria of Sagor catfish (Hexanematichthys sagor).	Pang Sing T, Julian R, Hatai K.	Biocontrol Sci	10.4265/bio.24.1	2019
Metabolism	Production, characterization and antimicrobial activities of bio-pigments by Aquisalibacillus elongatus MB592, Salinicoccus sesuvii MB597, and Halomonas aquamarina MB598 isolated from Khewra Salt Range, Pakistan.	Fariq A, Yasmin A, Jamil M.	Extremophiles	10.1007/s00792-019-01095-7	2019
	Evaluation of Different Lactic Acid Bacteria as Starter Cultures for Nono-A West African Fermented Dairy Product.	Ikele OM, Ogu CT, Jiang X, Cavender GA.	Foods	10.3390/foods13193030	2024
Metabolism	Biodegradation of ochratoxin A by Alcaligenes faecalis isolated from soil.	Zhang HH, Wang Y, Zhao C, Wang J, Zhang XL.	J Appl Microbiol	10.1111/jam.13537	2017
Metabolism	Screening methane-oxidizing bacteria from municipal solid waste landfills and simulating their effects on methane and ammonia reduction.	Pan J, Wang X, Cao A, Zhao G, Zhou C.	Environ Sci Pollut Res Int	10.1007/s11356-019-06545-5	2019
	Gram-Negative Toe Web Infections.	Waterton KA, Lipner SR.	Dermatol Pract Concept	10.5826/dpc.1401a59	2024
	The safety and efficacy of neutral electrolyzed water solution for wound irrigation: post-market clinical follow-up study.	Valdova V, Stepanova V, Lapcikova L.	Front Drug Saf Regul	10.3389/fdsfr.2024.1402684	2024
Metabolism	Arsenite biotransformation by Rhodococcus sp.: Characterization, optimization using response surface methodology and mechanistic studies.	Kumari N, Rana A, Jagadevan S.	Sci Total Environ	10.1016/j.scitotenv.2019.06.077	2019
	Molecular Characterization and Diversity of Bacteria Isolated from Fish and Fish Products Retailed in Kenyan Markets.	Kyule DN, Maingi JM, Njeru EM, Nyamache AK.	Int J Food Sci	10.1155/2022/2379323	2022
	Fitting replacement of signal peptide for highly efficient expression of three penicillin G acylases in E. coli.	Pan X, Yu Q, Chu J, Jiang T, He B.	Appl Microbiol Biotechnol	10.1007/s00253-018-9163-6	2018
Enzymology	Protein Quakes in Redox Metalloenzymes: Clues to Molecular Enzyme Conductivity Triggered by Binding of Small Substrate Molecules.	Bohr H, Shim I, Ulstrup J, Xiao X.	ChemistryOpen	10.1002/open.202400190	2024
Phylogeny	Isolation and Identification of Organics-Degrading Bacteria From Gas-to-Liquid Process Water.	Surkatti R, Al Disi ZA, El-Naas MH, Zouari N, Van Loosdrecht MCM, Onwusogh U.	Front Bioeng Biotechnol	10.3389/fbioe.2020.603305	2020
	Bloodstream infection with pandrug-resistant Alcaligenes faecalis treated with double-dose of tigecycline.	Hasan MJ, Nizhu LN, Rabbani R.	IDCases	10.1016/j.idcr.2019.e00600	2019
Enzymology	First Report of Extended-Spectrum beta-Lactamases TEM-116 and OXA-10 in Clinical Isolates of Alcaligenes Species from Kuala Lumpur, Malaysia.	Puah SM, Puthucheary SD, Chua KH.	Jpn J Infect Dis	10.7883/yoken.jjid.2018.031	2019
	The influence of benzene on the composition, diversity and performance of the anodic bacterial community in glucose-fed microbial fuel cells.	Tyszkiewicz N, Truu J, Mlynarz P, Pasternak G.	Front Microbiol	10.3389/fmicb.2024.1384463	2024
	The Difference between Rhizosphere and Endophytic Bacteria on the Safe Cultivation of Lettuce in Cr-Contaminated Farmland.	Wen Z, Liu Q, Yu C, Huang L, Liu Y, Xu S, Li Z, Liu C, Feng Y.	Toxics	10.3390/toxics11040371	2023
Enzymology	Production of R-Mandelic Acid Using Nitrilase from Recombinant E. coli Cells Immobilized with Tris(Hydroxymethyl)Phosphine.	Zhang XH, Liu ZQ, Xue YP, Wang YS, Yang B, Zheng YG.	Appl Biochem Biotechnol	10.1007/s12010-017-2604-3	2018
	Contaminated in-house environment contributes to the persistence and transmission of NDM-producing bacteria in a Chinese poultry farm.	Zhai R, Fu B, Shi X, Sun C, Liu Z, Wang S, Shen Z, Walsh TR, Cai C, Wang Y, Wu C.	Environ Int	10.1016/j.envint.2020.105715	2020
	Aerococcus Urinae Endocarditis: A Case Report and Literature Review.	Saeed Al-Asad K, Mazhar N, Srivastava S, Quadri S, Mitra S.	Cureus	10.7759/cureus.29853	2022
	A structural equation model predicts chronic wound healing time using patient characteristics and wound microbiome composition.	Ancira J, Gabrilska R, Tipton C, Miller C, Stickley Z, Omeir K, Wakeman C, Little T, Wolcott J, Philips CD.	Wound Repair Regen	10.1111/wrr.70004	2025
Metabolism	Modulation in phenolic root exudate profile of Abelmoschus esculentus expressing activation of defense pathway.	Ray S, Mishra S, Bisen K, Singh S, Sarma BK, Singh HB.	Microbiol Res	10.1016/j.micres.2017.11.011	2018
Enzymology	Purification, characterization of laccase from Pleurotus ostreatus HK35, and optimization for congo red biodecolorization using Box-Behnken design.	Isanapong J, Suwannoi K, Lertlattanapong S, Panchal S.	3 Biotech	10.1007/s13205-024-03926-7	2024
	Draft Genome Sequence of Alcaligenes faecalis BDB4, a Polyaromatic Hydrocarbon-Degrading Bacterium Isolated from Crude Oil-Contaminated Soil.	Singha LP, Kotoky R, Pandey P.	Genome Announc	10.1128/genomea.01346-17	2017
Enzymology	Lignin degradation by a novel thermophilic and alkaline yellow laccase from Chitinophaga sp.	Buzzo BB, Lima NSM, Pereira PAM, Gomes-Pepe ES, Sartini CCF, Lemos EGdM.	Microbiol Spectr	10.1128/spectrum.04013-23	2024
Enzymology	Structural basis of cuproenzyme nitrite reduction at the level of a single hydrogen atom.	Fukuda Y, Lintuluoto M, Hirano Y, Kusaka K, Inoue T, Tamada T.	J Biol Chem	10.1016/j.jbc.2025.110290	2025
Metabolism	Heterologous Expression and Characterization of A Novel Ochratoxin A Degrading Enzyme, N-acyl-L-amino Acid Amidohydrolase, from Alcaligenes faecalis.	Zhang H, Zhang Y, Yin T, Wang J, Zhang X.	Toxins (Basel)	10.3390/toxins11090518	2019
	Rapid detection of a novel B1-beta-lactamase gene, blaAFM-1 using a loop-mediated isothermal amplification (LAMP) assay.	Qin Y, Duan X, Peng Y, Rui Y.	Ann Clin Microbiol Antimicrob	10.1186/s12941-021-00486-z	2021
	Molecular characterization of chromium tolerant and gelatin hydrolyzing bacterial isolates from tannery wastes: Perspective on chrome-tanned leather waste biodegradation in Bangladesh.	Sarker SS, Hasan Sarkar MM, Sharmin SA, Tarannum N, Akter T, Alam MA, Miah MI, Ali Shaikh MA, Parveen S.	J Genet Eng Biotechnol	10.1016/j.jgeb.2025.100479	2025
	A Seed Endophytic Bacterium Cronobacter dublinensis BC-14 Enhances the Growth and Drought Tolerance of Echinochloa crus-galli.	Cheng S, Wang Q, Yang D, He Q, Deng J, Zhou Y, Zhang L, Jiang J.	Microorganisms	10.3390/microorganisms12122544	2024
	Effects of Different Plasticizers on the Structure, Physical Properties and Film Forming Performance of Curdlan Edible Films.	Chen Y, Wang J, Xu L, Nie Y, Ye Y, Qian J, Liu F, Zhang L.	Foods	10.3390/foods13233930	2024
	Antibiotic Resistance and Virulence Determinants of Pseudomonas aeruginosa Isolates Cultured from Hydrocarbon-Contaminated Environmental Samples.	Ozoaduche CL, Libisch B, Itoro D, Idemudia IB, Posta K, Olasz F.	Microorganisms	10.3390/microorganisms13030688	2025
	Isolation and characterization of an alkali and thermostable laccase from a novel Alcaligenes faecalis and its application in decolorization of synthetic dyes.	Mehandia S, Sharma SC, Arya SK.	Biotechnol Rep (Amst)	10.1016/j.btre.2019.e00413	2020
	Susceptibility and Synergistic Effects of Guava Plant Extract and Antimicrobial Drugs on Escherichia coli.	Mitra S, Bhesania Hodiwala AV, Kar H.	Cureus	10.7759/cureus.52345	2024
	Characterization, antioxidant and antimicrobial activities of green synthesized silver nanoparticles from Psidium guajava L. leaf aqueous extracts.	Wang L, Wu Y, Xie J, Wu S, Wu Z.	Mater Sci Eng C Mater Biol Appl	10.1016/j.msec.2018.01.003	2018
Metabolism	Biodegradation of Picolinic Acid by a Newly Isolated Bacterium Alcaligenes faecalis Strain JQ135.	Qiu J, Zhang J, Zhang Y, Wang Y, Tong L, Hong Q, He J.	Curr Microbiol	10.1007/s00284-017-1205-2	2017
Enzymology	Partial purification and biochemical characterization of a new highly acidic NYSO laccase from Alcaligenes faecalis.	Abdelgalil SA, Attia AR, Reyed RM, Soliman NA.	J Genet Eng Biotechnol	10.1186/s43141-020-00088-w	2020
Pathogenicity	A cocktail of volatile compounds emitted from Alcaligenes faecalis JBCS1294 induces salt tolerance in Arabidopsis thaliana by modulating hormonal pathways and ion transporters.	Bhattacharyya D, Lee YH.	J Plant Physiol	10.1016/j.jplph.2017.04.002	2017
	Characterization of novel cold-active chitin deacetylase for green production of bioactive chitosan.	Abd El-Ghany MN, Hamdi SA, Zahran AK, Abou-Taleb MA, Heikel AM, Abou El-Kheir MT, Farahat MG.	AMB Express	10.1186/s13568-024-01804-2	2025
Enzymology	An In Silico Analysis of Synthetic and Natural Compounds as Inhibitors of Nitrous Oxide Reductase (N₂OR) and Nitrite Reductase (NIR).	Narayanaswamy R, Prabhakaran VS, Al-Ansari MM, Al-Humaid LA, Tiwari P.	Toxics	10.3390/toxics11080660	2023
Phylogeny	Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics.	Zhou J, Liu Y, Gu T, Zhou J, Chen F, Li S.	mSystems	10.1128/msystems.01463-24	2025
	Challenges in managing a multifactorial eosinophilic pneumonia: daptomycin vs strongyloidiasis case report.	Eckhardt LGJ, Kelley JL, Maes D.	BMC Infect Dis	10.1186/s12879-022-07852-y	2022
	Microbiological Air Quality and Drug Resistance in Airborne Bacteria Isolated from a Waste Sorting Plant Located in Poland-A Case Study.	Bragoszewska E, Biedron I, Hryb W.	Microorganisms	10.3390/microorganisms8020202	2020
	Synthesis of immunomodulatory biomimetic lipid polymer hybrid nanoparticles and application of zebrafish larvae in immunomodulation screening.	Irabin AF, Ollewagen T, Smith C, Ahmed R, Reineke J, Reijnders R, Sampson SL, Plessis ND, Dube A.	Eur J Pharm Sci	10.1016/j.ejps.2025.107037	2025
Metabolism	Antibacterial evaluation of silver nanoparticles synthesized from lychee peel: individual versus antibiotic conjugated effects.	Perveen S, Safdar N, Chaudhry GE, Yasmin A.	World J Microbiol Biotechnol	10.1007/s11274-018-2500-1	2018
	Acinetobacter sp. ME1: a multifunctional bacterium for phytoremediation utilizing melanin production, heavy metal tolerance, and plant growth promotion.	Lee SY, Cho KS.	J Zhejiang Univ Sci B	10.1631/jzus.b2400522	2025
	Coupling of bioaugmentation and phytoremediation to improve PCBs removal from a transformer oil-contaminated soil.	Salimizadeh M, Shirvani M, Shariatmadari H, Nikaeen M, Leili Mohebi Nozar S.	Int J Phytoremediation	10.1080/15226514.2017.1393388	2018
	Enrichment of horizontally transferred gene clusters in bacterial extracellular vesicles via non lytic mechanisms.	Takano S, Takenawa S, Naradasu D, Yan K, Wen X, Maehara T, Nomura N, Obana N, Toyofuku M, Usui M, Ariyoshi W, Okamoto A.	ISME J	10.1093/ismejo/wraf193	2025
	Unravelling the complex relationship between Suillus bovinus and Gomphidius roseus through investigation of their sporocarps in Pinus massoniana forests.	Li D, Yuan G, Sun X.	BMC Microbiol	10.1186/s12866-025-03881-0	2025
	Diversity of Methylobacterium species associated with New Zealand native plants.	Jahan R, McDonald IR.	FEMS Microbiol Lett	10.1093/femsle/fnad124	2023
	Characterization of Bacillus pacificus G124 and Its Promoting Role in Plant Growth and Drought Tolerance.	Ma X, Zhang B, Xiang X, Li W, Li J, Li Y, Tran LP, Yin H.	Plants (Basel)	10.3390/plants13202864	2024
	Retrospective Analysis of Urinary Tract Infection in the Pediatric Population at a Tertiary Care Centre.	Perween N, Rai S, Nandwani S, Kumar SK.	Cureus	10.7759/cureus.24796	2022
Metabolism	Rhizoremediation prospects of Polyaromatic hydrocarbon degrading rhizobacteria, that facilitate glutathione and glutathione-S-transferase mediated stress response, and enhance growth of rice plants in pyrene contaminated soil.	Singha LP, Sinha N, Pandey P.	Ecotoxicol Environ Saf	10.1016/j.ecoenv.2018.08.069	2018
	Global analysis of the metaplasmidome: ecological drivers and spread of antibiotic resistance genes across ecosystems.	Debroas D.	Microbiome	10.1186/s40168-025-02062-5	2025
Metabolism	Improving the bioremoval of sulfamethoxazole and alleviating cytotoxicity of its biotransformation by laccase producing system under coculture of Pycnoporus sanguineus and Alcaligenes faecalis.	Li X, Xu QM, Cheng JS, Yuan YJ.	Bioresour Technol	10.1016/j.biortech.2016.08.088	2016
	Biodegradation of methylene blue dye in a batch and continuous mode using biochar as packing media.	Bharti V, Vikrant K, Goswami M, Tiwari H, Sonwani RK, Lee J, Tsang DCW, Kim KH, Saeed M, Kumar S, Rai BN, Giri BS, Singh RS.	Environ Res	10.1016/j.envres.2019.01.051	2019
Metabolism	Staphylococcus aureus accessory gene regulator quorum-sensing system inhibits keratinocyte lipid enzymes and delays wound repair.	Bagood MD, Marjanovic J, Jiang N, Chan H, Dokoshi T, Cavagnero KJ, Li F, Roso-Mares A, Almoughrabie S, Liu E, Pastar I, Tomic-Canic M, Horswill AR, Gallo RL.	J Clin Invest	10.1172/jci190411	2025
	Unveiling the Antibiotic Susceptibility and Antimicrobial Potential of Bacteria from Human Breast Milk of Pakistani Women: An Exploratory Study.	Saeed A, Ali H, Yasmin A, Baig M, Ullah A, Kazmi A, Ahmed MA, Albadrani GM, El-Demerdash FM, Bibi M, Abdel-Daim MM, Ali I, Hussain S.	Biomed Res Int	10.1155/2023/6399699	2023
Metabolism	Biochemical and histochemical analyses revealing endophytic Alcaligenes faecalis mediated suppression of oxidative stress in Abelmoschus esculentus challenged with Sclerotium rolfsii.	Ray S, Singh V, Singh S, Sarma BK, Singh HB.	Plant Physiol Biochem	10.1016/j.plaphy.2016.10.019	2016
	Exploring the Structurally Conserved Regions and Functional Significance in Bacterial N-Terminal Nucleophile (Ntn) Amide-Hydrolases.	Quiroga I, Hernandez-Gonzalez JA, Bautista-Rodriguez E, Benitez-Rojas AC.	Int J Mol Sci	10.3390/ijms25136850	2024
Genetics	Next Steps: Studying Diabetic Foot Infections with Next-Generation Molecular Assays.	Sande C, Boston ZJ, Kalan LR, Brennan MB.	Curr Infect Dis Rep	10.1007/s11908-023-00822-8	2023
	Association of tumor microbiome with survival in resected early-stage PDAC.	Meng Y, Wang C, Usyk M, Kwak S, Peng C, Hu KS, Oberstein PE, Krogsgaard M, Li H, Hayes RB, Ahn J.	mSystems	10.1128/msystems.01229-24	2025
	Design of a two functional permeable reactive barrier for synergistic enzymatic and microbial bioremediation of phenol-contaminated waters: laboratory column evaluation : Enzymatic and microbial bioremediation of phenol in a bilayer permeable reactive barrier.	Mirdamadian SH, Asad S, Dastgheib SMM, Moghimi H.	BMC Microbiol	10.1186/s12866-024-03413-2	2024
	Pulmonary Dysfunction Augmenting Bacterial Aerosols in Leather Tanneries of Punjab, Pakistan.	Sarwar F, Alam K, Chow CW, Saeed M, Malik RN.	Int J Chron Obstruct Pulmon Dis	10.2147/copd.s328129	2021
	Effect of bacterium in the malignant wounds of soft tissue sarcoma.	Nakata E, Fujiwara T, Katayama H, Itano T, Kunisada T, Ozaki T.	Oncol Lett	10.3892/ol.2022.13465	2022
	Isolation of Bacterial and Fungal Microbiota Associated with Hermetia illucens Larvae Reveals Novel Insights into Entomopathogenicity.	Kluber P, Muller S, Schmidt J, Zorn H, Ruhl M.	Microorganisms	10.3390/microorganisms10020319	2022
	Metagenomic insights reveal the differences in the community composition and functional characteristics of the sea turtle microbiomes based on host species and tissue region.	Dong L, Du Y, Qiu F, Zhang M, Wang X, Zhu X, Yao Y, Li J, Ji X, Zhu X.	Front Microbiol	10.3389/fmicb.2025.1652229	2025
	Effects and mechanism of riboflavin on the growth of Alcaligenes faecalis under bias conditions.	He M, Chen M, Liu M, Dong F, Wei H, Wang D.	RSC Adv	10.1039/c9ra04066h	2019
	A novel mannan-specific chimeric antigen receptor M-CAR redirects T cells to interact with Candida spp. hyphae and Rhizopus oryzae spores.	Guimaraes JG, de Campos GY, Machado MP, Oliveira Brito PKM, Dos Reis TF, Goldman GH, Bonini Palma PV, de Campos Fraga-Silva TF, Cavallin DCU, Venturini J, da Silva TA.	Bioengineered	10.1080/21655979.2025.2458786	2025
Genetics	A novel acidic laminarinase derived from Jermuk hot spring metagenome.	Paloyan A, Soghomonyan T, Karapetyan M, Grigoryan H, Kruger A, Cuskin F, Marles-Wright J, Burkhardt C, Antranikian G.	Appl Microbiol Biotechnol	10.1007/s00253-025-13557-4	2025
	Endophytic microbial communities and functional shifts in Hemarthria compressa grass in response to Silicon and Selenium amendment.	Liao R, Zhang W, Xu R, Li K, Wei W, Sheng R.	BMC Plant Biol	10.1186/s12870-025-06178-6	2025
	Glycoprotein Matrix Zinc Exhibits Improved Absorption: A Randomized Crossover Trial.	Jager R, Purpura M, Davis J, Keratsopoulos N, Parra ME, Secrest AH, Tinsley GM, Taylor L.	Nutrients	10.3390/nu16071012	2024
	Comparative analysis of microbial communities in different growth stages of Dermacentor nuttalli.	Zhao L, Ma YM, Yang B, Han WX, Zhao WH, Chai HL, Zhang ZS, Zhan YJ, Wang LF, Xing Y, Yu LF, Wang JL, Ding YL, Liu YH.	Front Vet Sci	10.3389/fvets.2022.1021426	2022
	Screening of New Potential Probiotics Strains against Photobacterium damselae Subsp. piscicida for Marine Aquaculture.	Gutierrez Falcon A, Padilla D, Real F, Ramos Sosa MJ, Acosta-Hernandez B, Sanchez Henao A, Garcia-Alvarez N, Rosario Medina I, Silva Sergent F, Deniz S, Martin-Barrasa JL.	Animals (Basel)	10.3390/ani11072029	2021
	Fusion of Chitin-Binding Domain From Chitinolyticbacter meiyuanensis SYBC-H1 to the Leaf-Branch Compost Cutinase for Enhanced PET Hydrolysis.	Xue R, Chen Y, Rong H, Wei R, Cui Z, Zhou J, Dong W, Jiang M.	Front Bioeng Biotechnol	10.3389/fbioe.2021.762854	2021
Pathogenicity	Bacterial species and mycotoxin contamination associated with locust bean, melon and their fermented products in south-western Nigeria.	Adedeji BS, Ezeokoli OT, Ezekiel CN, Obadina AO, Somorin YM, Sulyok M, Adeleke RA, Warth B, Nwangburuka CC, Omemu AM, Oyewole OB, Krska R.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2017.07.014	2017
	An aegerolysin-like protein from Heliothis virescens ascovirus 3h (HvAV-3h) shows immune suppression and antibacterial activity.	Zaghloul HAH, Xiao Z, Tang J, Xiao T, Gao J, Hu J, Huang GH.	J Gen Virol	10.1099/jgv.0.002107	2025
Genetics	Whole genome sequencing and analysis of selenite-reducing bacteria Bacillus paralicheniformis SR14 in response to different sugar supplements.	Wang F, Gong T, Du M, Xiao X, Jiang Z, Hu W, Wang Y, Cheng Y.	AMB Express	10.1186/s13568-023-01598-9	2023
	ESKAPEE Pathogen Biofilm Control on Surfaces with Probiotic Lactobacillaceae and Bacillus species.	Neidhofer C, Rathore K, Parcina M, Sieber MA.	Antibiotics (Basel)	10.3390/antibiotics12050871	2023
Metabolism	Biological Effects of beta-Glucans on Osteoclastogenesis.	Ariyoshi W, Hara S, Koga A, Nagai-Yoshioka Y, Yamasaki R.	Molecules	10.3390/molecules26071982	2021
Enzymology	In vitro antibacterial activities and molecular characterization of bacterial species isolated from farmlands against selected pathogens.	Onajobi IB, Idowu EO, Adeyemi JO, Samson OJ, Ogunyinka PI, Fagade OE.	Biotechnol Rep (Amst)	10.1016/j.btre.2020.e00513	2020
Enzymology	Improved thermostability of creatinase from Alcaligenes Faecalis through non-biased phylogenetic consensus-guided mutagenesis.	Bai X, Li D, Ma F, Deng X, Luo M, Feng Y, Yang G.	Microb Cell Fact	10.1186/s12934-020-01451-9	2020
	Enhanced chemotaxis and degradation of nonylphenol in Pseudoxanthomonas mexicana via CRISPR-mediated receptor modification.	Chai R, Guo J, Yang C, Zhu D, Li T, Yang W, Liu X, Chen X, Huang S, Wang H, Yao X, Gao Y, Qiu L.	Sci Rep	10.1038/s41598-025-97273-z	2025
Metabolism	Efficient cascade synthesis of ampicillin from penicillin G potassium salt using wild and mutant penicillin G acylase from Alcaligenes faecalis.	Deng S, Ma X, Su E, Wei D.	J Biotechnol	10.1016/j.jbiotec.2015.12.034	2016
	Kerstersia gyiorum isolated for the first time from two patients with neurodegenerative disease: report of two unusual cases and a review of the literature.	Sun Y, Liu D, Yang X, Li W, Lin S.	J Int Med Res	10.1177/03000605231171009	2023
Metabolism	The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity.	Mahjoubi M, Aliyu H, Cappello S, Naifer M, Souissi Y, Cowan DA, Cherif A.	PLoS One	10.1371/journal.pone.0221574	2019
Phylogeny	Molecular characterization of multidrug-resistance in Gram-negative bacteria from the Peshawar teaching hospital, Pakistan.	Masseron A, Poirel L, Jamil Ali B, Syed MA, Nordmann P.	New Microbes New Infect	10.1016/j.nmni.2019.100605	2019
	Probiotic Properties of Alcaligenes faecalis Isolated from Argyrosomus regius in Experimental Peritonitis (Rat Model).	Gutierrez-Falcon AI, Ramos-Nuez AM, de Los Monteros Y Zayas AE, Castillo DFP, Garcia-Laorden MI, Chamizo-Lopez FJ, Real Valcarcel F, Campelo FA, Benitez AB, Salgueiro PN, Cabrera CD, Rivero-Vera JC, Gonzalez-Martin JM, Caballero JM, Frias-Beneyto R, Villar J, Martin-Barrasa JL.	Probiotics Antimicrob Proteins	10.1007/s12602-021-09767-7	2021
Metabolism	Exogenous cofactors for the improvement of bioremoval and biotransformation of sulfamethoxazole by Alcaligenes faecalis.	Zhang YB, Zhou J, Xu QM, Cheng JS, Luo YL, Yuan YJ.	Sci Total Environ	10.1016/j.scitotenv.2016.05.063	2016
	Evaluation of Biocompatibility and Antagonistic Properties of Microorganisms Isolated from Natural Sources for Obtaining Biofertilizers Using Microalgae Hydrolysate.	Babich O, Sukhikh S, Dyshlyuk L, Shishko O, Milentyeva I, Prosekov A, Pavsky V, Ivanova S, Dolganyuk V.	Microorganisms	10.3390/microorganisms9081667	2021
	False-positive Elevation of Beta-D-glucan and Aspergillus Galactomannan Levels Due to Mendelson's Syndrome after Rice Aspiration.	Yamamoto T, Oishi K, Suizu J, Murakawa K, Hisamoto Y, Fujii T, Harada M, Chikumoto A, Kikuchi Y, Hamada K, Uehara S, Ohata S, Murata Y, Sakamoto K, Yamaji Y, Asami-Noyama M, Edakuni N, Kakugawa T, Hirano T, Matsunaga K.	Intern Med	10.2169/internalmedicine.8805-21	2022
Biotechnology	Insights into the microbial composition and potential efficiency of selected commercial biofertilisers.	Raimi A, Roopnarain A, Chirima GJ, Adeleke R.	Heliyon	10.1016/j.heliyon.2020.e04342	2020
	Comprehensive Biodegradation Analysis of Chemically Modified Poly(3-hydroxybutyrate) Materials with Different Crystal Structures.	Julinova M, Sasinkova D, Minarik A, Kaszonyiova M, Kalendova A, Kadleckova M, Fayyazbakhsh A, Koutny M.	Biomacromolecules	10.1021/acs.biomac.3c00623	2023
	One-Pot Biosynthesis of Acetone from Waste Poly(hydroxybutyrate).	Armijo-Galdames BO, Sadler JC.	ACS Sustain Chem Eng	10.1021/acssuschemeng.4c00357	2024
Enzymology	Fluoroquinolone-Resistant Alcaligenes faecalis Related to Chronic Suppurative Otitis Media, Angola.	Filipe M, Reimer A, Matuschek E, Paul M, Pelkonen T, Riesbeck K.	Emerg Infect Dis	10.3201/eid2310.170268	2017
	A Nanostructured Cu(II) Coordination Polymer Based on Alanine as a Trifunctional Mimic Enzyme and Efficient Composite in the Detection of Sphingobacteria.	Maldonado N, Latorre A, Zamora F, Somoza A, Gomez-Garcia CJ, Bastida A, Amo-Ochoa P.	Bioinorg Chem Appl	10.1155/2022/8788221	2022
	Isolation, screening, and characterization of heavy metal-resistant bacteria from solid waste dumping sites in Central Gondar, Northwest, Ethiopia.	Dinku A, Jiru TM.	Sci Prog	10.1177/00368504251315807	2025
Metabolism	Biodegradation of nicosulfuron by a novel Alcaligenes faecalis strain ZWS11.	Zhao W, Wang C, Xu L, Zhao C, Liang H, Qiu L.	J Environ Sci (China)	10.1016/j.jes.2015.03.022	2015
Pathogenicity	Potential role of compost mixed biochar with rhizobacteria in mitigating lead toxicity in spinach.	Zafar-Ul-Hye M, Tahzeeb-Ul-Hassan M, Abid M, Fahad S, Brtnicky M, Dokulilova T, Datta R, Danish S.	Sci Rep	10.1038/s41598-020-69183-9	2020
Phylogeny	Molecular identification of Proteus mirabilis, Vibrio species leading to CRISPR-Cas9 modification of tcpA and UreC genes causing cholera and UTI.	Naveed M, Tahir F, Aziz T, Waseem M, Makhdoom SI, Ali N, Alharbi M, Albekairi TH, Alasmari AF.	Sci Rep	10.1038/s41598-024-59340-9	2024
Metabolism	Characterization of the Immune-Modulating Properties of Different beta-Glucans on Myeloid Dendritic Cells.	Rainer H, Goretzki A, Lin YJ, Schiller HR, Krause M, Doring S, Strecker D, Junker AC, Wolfheimer S, Toda M, Scheurer S, Schulke S.	Int J Mol Sci	10.3390/ijms25189914	2024
Biotechnology	Biodegradation of reactive textile dye Novacron Super Black G by free cells of newly isolated Alcaligenes faecalis AZ26 and Bacillus spp obtained from textile effluents.	Hossen MZ, Hussain ME, Hakim A, Islam K, Uddin MN, Azad AK.	Heliyon	10.1016/j.heliyon.2019.e02068	2019
	The Influence of Exogenous CdS Nanoparticles on the Growth and Carbon Assimilation Efficiency of Escherichia coli.	Yang K, Yang Y, Wang J, Huang X, Cui D, Zhao M.	Biology (Basel)	10.3390/biology13100847	2024
Metabolism	Tributyltin chloride (TBTCl)-enhanced exopolysaccharide and siderophore production in an estuarine Alcaligenes faecalis strain.	Khanolkar D, Dubey SK, Naik MM.	Arch Environ Contam Toxicol	10.1007/s00244-014-0120-9	2015
	Detection and Characterization of Clinical Bordetella trematum Isolates from Chronic Wounds.	Buechler C, Neidhofer C, Hornung T, Neuenhoff M, Parcina M.	Pathogens	10.3390/pathogens10080966	2021
Genetics	First report of carbapenems encoding multidrug-resistant gram-negative bacteria from a pediatric hospital in Gaza Strip, Palestine.	El Aila NA, Al Laham NA, Doijad SP, Imirzalioglu C, Mraheil MA.	BMC Microbiol	10.1186/s12866-024-03550-8	2024
	Influence of Skin Commensals on Therapeutic Outcomes of Surgically Debrided Diabetic Foot Infections-A Large Retrospective Comparative Study.	Uckay I, Lebowitz D, Kressmann B, Lipsky BA, Gariani K.	Antibiotics (Basel)	10.3390/antibiotics12020316	2023
	Simultaneous organic/inorganic phosphate solubilization by Staphylococcus succinus NG-9 under saline-alkali conditions: Insights into its characteristics, mechanisms, and potential applications.	Xie X, Xu Z, Gan L, Dong C, Zhang T, Huang Y, He T, Tian Y, Zou X.	Microbiol Spectr	10.1128/spectrum.00490-25	2025
Metabolism	Synergistic co-metabolism enhancing the crude oil degradation by Acinetobacter oleivorans DR1 and its metabolic potential.	Singha LP, Kumari R, Singha KM, Pandey P, Shukla P.	Microbiol Spectr	10.1128/spectrum.03023-24	2025
Metabolism	Curdlan activates dendritic cells through dectin-1 and toll-like receptor 4 signaling.	Kim HS, Park KH, Lee HK, Kim JS, Kim YG, Lee JH, Kim KH, Yun J, Hwang BY, Hong JT, Kim Y, Han SB.	Int Immunopharmacol	10.1016/j.intimp.2016.07.013	2016
Enzymology	Oviposition-Site Selection of Phlebotomus papatasi (Diptera: Psychodidae) Sand Flies: Attraction to Bacterial Isolates From an Attractive Rearing Medium.	Kakumanu ML, Marayati BF, Schal C, Apperson CS, Wasserberg G, Ponnusamy L.	J Med Entomol	10.1093/jme/tjaa198	2021
Enzymology	Alcaligenes faecalis: an unusual cause of skin and soft tissue infection.	Tena D, Fernandez C, Lago MR.	Jpn J Infect Dis	10.7883/yoken.jjid.2014.164	2015
	Ignatzschineria indica bloodstream infection associated with maggot infestation of a wound in a patient from Canada.	Fear T, Richert Q, Levesque J, Walkty A, Keynan Y.	J Assoc Med Microbiol Infect Dis Can	10.3138/jammi-2019-0027	2020
	Lipopolysaccharide Derived From the Lymphoid-Resident Commensal Bacteria Alcaligenes faecalis Functions as an Effective Nasal Adjuvant to Augment IgA Antibody and Th17 Cell Responses.	Wang Y, Hosomi K, Shimoyama A, Yoshii K, Nagatake T, Fujimoto Y, Kiyono H, Fukase K, Kunisawa J.	Front Immunol	10.3389/fimmu.2021.699349	2021
Pathogenicity	Pathogenic features of heterotrophic plate count bacteria from drinking-water boreholes.	Horn S, Pieters R, Bezuidenhout C.	J Water Health	10.2166/wh.2016.009	2016
	MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction.	Lang J.	PLoS One	10.1371/journal.pone.0267066	2022
Enzymology	Establishment and evaluation of a rapid method for the detection of bacterial pneumonia in hospitalized patients via multiplex PCR-capillary electrophoresis (MPCE).	Wang J, Zhao P, Zhao M, Zhang D, Chen S, Liu Y, Gao Y, Tie Y, Feng Z.	Microbiol Spectr	10.1128/spectrum.01202-24	2024
	The internal bacterial diversity of stored product pests	Sevim A, Sevim E, Demirci M, Sandalli C.	Ann Microbiol		2016
	Epsilon-Caprolactam- and Nylon Oligomer-Degrading Bacterium Brevibacterium epidermidis BS3: Characterization and Potential Use in Bioremediation.	Esikova TZ, Akatova EV, Solyanikova IP.	Microorganisms	10.3390/microorganisms11020373	2023
	The Roman Houses of the Caelian Hill (Rome, Italy): Multitemporal Evaluation of Biodeterioration Patterns.	Isola D, Bartoli F, Morretta S, Caneva G.	Microorganisms	10.3390/microorganisms11071770	2023
Enzymology	Insight into the bacterial diversity of fermentation woad dye vats as revealed by PCR-DGGE and pyrosequencing.	Milanovic V, Osimani A, Taccari M, Garofalo C, Butta A, Clementi F, Aquilanti L.	J Ind Microbiol Biotechnol	10.1007/s10295-017-1921-4	2017
Metabolism	Novel 3,6-Dihydroxypicolinic Acid Decarboxylase-Mediated Picolinic Acid Catabolism in Alcaligenes faecalis JQ135.	Qiu J, Zhang Y, Yao S, Ren H, Qian M, Hong Q, Lu Z, He J.	J Bacteriol	10.1128/jb.00665-18	2019
Metabolism	Efficient enzymatic synthesis of ampicillin by mutant Alcaligenes faecalis penicillin G acylase.	Deng S, Su E, Ma X, Yang S, Wei D.	J Biotechnol	10.1016/j.jbiotec.2015.01.004	2015
	Isolation, screening, and identification of chitinase-producing bacterial strains from riverbank soils at Ambo, Western Ethiopia.	Gonfa TG, Negessa AK, Bulto AO.	Heliyon	10.1016/j.heliyon.2023.e21643	2023
Biotechnology	Vip3C proteins from Paenibacillus spp. for controlling lepidopteran crop pests.	Ciche T, Moar W, Ahmad A, Bowen D, Chay C, Howe A, Kesanapalli U, Lutke J, Bean G, Milligan J, Pleau M, Yin Y, Akbar W, Heppler M, Griffith C, Morrell K, Dunkmann K, Anderson H, Ahrens J, Sommers P, Burgie ES, Zinnel F, Zheng M, Fitzpatrick J, Rau M, Rydel T, White T, Kerns D, Roberts J.	Appl Environ Microbiol	10.1128/aem.00253-25	2025
	Bacterial communities of indoor surface of stingless bee nests.	de Sousa LP.	PLoS One	10.1371/journal.pone.0252933	2021
	Biomimetic Approach to Enhance Enzymatic Hydrolysis of the Synthetic Polyester Poly(1,4-butylene adipate): Fusing Binding Modules to Esterases.	Perz V, Zumstein MT, Sander M, Zitzenbacher S, Ribitsch D, Guebitz GM.	Biomacromolecules	10.1021/acs.biomac.5b01219	2015
	Studying the Possibilities of Using 2-Halogen-Substituted Acetamides As Acyl Donors in Penicillin Acylase-Catalyzed Reactions.	Panin NV, Nikulin MV, Tiurin ES, Drobot VV, Morozova IA, Svedas VK.	Acta Naturae	10.32607/20758251-2019-11-2-77-81	2019
	Showing the limitations of available phenotypic assays to detect Burkholderia pseudomallei from clinical specimens in Nigeria.	Orababa OQ, Adesida SA, Peters RF, AbdulGanniyu Z, Olakojo O, Abioye A.	Access Microbiol	10.1099/acmi.0.000604.v5	2023
	Cr(VI) removal performance from wastewater by microflora isolated from tannery effluents in a semi-arid environment: a SEM, EDX, FTIR and zeta potential study.	Ake AHJ, Rochdi N, Jemo M, Hafidi M, Ouhdouch Y, El Fels L.	Front Microbiol	10.3389/fmicb.2024.1423741	2024
Metabolism	Enzymatic hydrolysis of poly(ethyleneterephthalate) used for and analysed by pore modification of track-etched membranes.	Gamerith C, Gajda M, Ortner A, Acero EH, Guebitz GM, Ulbricht M.	N Biotechnol	10.1016/j.nbt.2017.06.007	2017
Genetics	Genomic analysis of Enterobacteriaceae from colorectal cancer patients at a tertiary hospital in Ghana: a case-control study.	Bachelle SV, Bah SY, Addo RT, Bediako-Bowan AAA, Egyir B, Tsatsu SE, Dzudzor B, Amarh V.	Sci Rep	10.1038/s41598-024-74299-3	2024
	Bacteria and Boar Semen Storage: Progress and Challenges.	Contreras MJ, Nunez-Montero K, Bruna P, Garcia M, Leal K, Barrientos L, Weber H.	Antibiotics (Basel)	10.3390/antibiotics11121796	2022
	Unveiling the Neem (Azadirachta indica) Effects on Biofilm Formation of Food-Borne Bacteria and the Potential Mechanism Using a Molecular Docking Approach.	Mahmoud GA, Rashed NM, El-Ganainy SM, Salem SH.	Plants (Basel)	10.3390/plants13182669	2024
	Microbial Electrolysis Cells Based on a Bacterial Anode Encapsulated with a Dialysis Bag Including Graphite Particles.	Dubrovin IA, Hirsch LO, Chiliveru A, Jukanti A, Rozenfeld S, Schechter A, Cahan R.	Microorganisms	10.3390/microorganisms12071486	2024
	Isolation, characterization, identification, genomics and analyses of bioaccumulation and biosorption potential of two arsenic-resistant bacteria obtained from natural environments.	Roy V, Saha BK, Adhikary S, Chaki MG, Sarkar M, Pal A.	Sci Rep	10.1038/s41598-024-56082-6	2024
	Mycosynthesis of zinc oxide nanoparticles using Mucor racemosus with their antimicrobial, antibiofilm, anticancer and antioxidant activities.	Elkady FM, Badr BM, Saied E, Hashem AH, Abdulrahman MS, Alkherkhisy MM, Selim TA, Alshabrmi FM, Alatawi EA, Aba Alkhayl FF, Salama A, Mansy MS, Aufy M.	Sci Rep	10.1038/s41598-025-03421-w	2025
	Age- and Sex-Linked Bacterial Community Variation and Function Prediction from Insoles of Healthy Chinese Population.	Hu X, Chang L, Wang Z, Liu G, Hu Z, Li N.	Indian J Microbiol	10.1007/s12088-020-00855-w	2020
Pathogenicity	Autotoxins in continuous tobacco cropping soils and their management.	Chen Y, Yang L, Zhang L, Li J, Zheng Y, Yang W, Deng L, Gao Q, Mi Q, Li X, Zeng W, Ding X, Xiang H.	Front Plant Sci	10.3389/fpls.2023.1106033	2023
	Can antibiotics for enteritis or for urinary tract infection disrupt the urinary microbiota in rats?	Liu F, Hu L, Sheng J, Sun Y, Xia Q, Tang Y, Jiang P, Wei S, Hu J, Lin H, Xu Z, Guo W, Gu Y, Feng N.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1169909	2023
Metabolism	Improvement of Alcaligenes faecalis nitrilase by gene site saturation mutagenesis and its application in stereospecific biosynthesis of (R)-(-)-mandelic acid.	Liu ZQ, Zhang XH, Xue YP, Xu M, Zheng YG.	J Agric Food Chem	10.1021/jf405683f	2014
	Akkermansia muciniphila-derived hypoacylated rough-type lipopolysaccharides alleviate diet-induced obesity via activation of TLR4-IL-23-IL-22 immune axis.	Sun L, Zhang Y, Dong W, Sun J, Wang T, Shao F, Dai H, Han J, Wang W, Wang S, Zhao T, Wang L, Liu C, Liu S, Liu H.	Imeta	10.1002/imt2.70066	2025
Pathogenicity	Compost mixed fruits and vegetable waste biochar with ACC deaminase rhizobacteria can minimize lead stress in mint plants.	Zafar-Ul-Hye M, Tahzeeb-Ul-Hassan M, Wahid A, Danish S, Khan MJ, Fahad S, Brtnicky M, Hussain GS, Battaglia ML, Datta R.	Sci Rep	10.1038/s41598-021-86082-9	2021
	Preparation, characteristics and cytotoxicity of green synthesized selenium nanoparticles using Paenibacillus motobuensis LY5201 isolated from the local specialty food of longevity area.	Long Q, Cui LK, He SB, Sun J, Chen QZ, Bao HD, Liang TY, Liang BY, Cui LY.	Sci Rep	10.1038/s41598-022-26396-4	2023
	Phyto-treatment of tannery industry effluents under combined application of citric acid and chromium-reducing bacterial strain through Lemna minor L.: A lab scale study.	Arshad R, Al-Huqail AA, Alghanem SMS, Alsudays IM, Farid M, Sarfraz W, Abbas M, Asam ZUZ, Khalid N, Yong JWH, Abeed AHA.	Heliyon	10.1016/j.heliyon.2024.e36309	2024
Enzymology	Endophthalmitis caused by Alcaligenes faecalis: a case series.	Pal SS, Panigrahi PK, Roy R, Nandi K, Das S.	Ocul Immunol Inflamm	10.3109/09273948.2013.817592	2013
Pathogenicity	Puriton attenuates the asthma severity in ovalbumin-induced murine model via balancing Th1/Th2 and inhibiting inflammation.	Bok SH, Jang HE, Kim KH, Park DH.	PLoS One	10.1371/journal.pone.0322792	2025
Pathogenicity	Inhibitory Effect of Volatiles Emitted From Alcaligenes faecalis N1-4 on Aspergillus flavus and Aflatoxins in Storage.	Gong AD, Wu NN, Kong XW, Zhang YM, Hu MJ, Gong SJ, Dong FY, Wang JH, Zhao ZY, Liao YC.	Front Microbiol	10.3389/fmicb.2019.01419	2019
	Euglena gracilis beta-Glucans (1,3): Enriching Colostrum of Sow for Enhanced Piglet Immunity	de Carvalho R, Callegari M, Dias C, Kirwan S, da Costa M, da Silva C.	Animals (Basel)		2023
	Assessment of antibacterial and antioxidant properties of chitosan edible films incorporated with maqui berry (Aristotelia chilensis)	Genskowsky E, Puente LA, Perez-Alvarez JA, Fernandez-Lopez J, Munoz LA, Viuda-Martos M.	Lebensm Wiss Technol	10.1016/j.lwt.2015.07.026	2015
	Preparation and Characteristics of Polyethylene Oxide/Curdlan Nanofiber Films by Electrospinning for Biomedical Applications.	Lin SH, Ou SL, Hsu HM, Wu JY.	Materials (Basel)	10.3390/ma16103863	2023
	Microbial bioremediation of persistent organic pollutants in plant tissues provides crop growth promoting liquid fertilizer.	Butcher J, Villette C, Zumsteg J, Maurer L, Barchietto T, Rigo R, Floch K, Cseh A, Buchet S, Stintzi A, Heintz D.	Nat Commun	10.1038/s41467-025-60918-8	2025
	Clinical performance of metagenomic next-generation sequencing for diagnosis of pulmonary Aspergillus infection and colonization.	Jiang Z, Gai W, Zhang X, Zheng Y, Jin X, Han Z, Ao G, He J, Shu D, Liu X, Zhou Y, Hua Z.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1345706	2024
	The symbiotic bacteria Alcaligenes faecalis of the entomopathogenic nematodes Oscheius spp. exhibit potential biocontrol of plant- and entomopathogenic fungi.	Shan S, Wang W, Song C, Wang M, Sun B, Li Y, Fu Y, Gu X, Ruan W, Rasmann S.	Microb Biotechnol	10.1111/1751-7915.13365	2019
	Analysis of structural and metabolic changes in surface microorganisms following powdery mildew infection in wheat and assessment of their potential function in biological control.	Wu Z, Xue X.	PLoS One	10.1371/journal.pone.0320682	2025
	Capture of Essential Trace Elements and Phosphate Accumulation as a Basis for the Antimicrobial Activity of a New Ultramicrobacterium-Microbacterium lacticum Str. F2E.	Suzina NE, Machulin AV, Sorokin VV, Polivtseva VN, Esikova TZ, Shorokhova AP, Delegan YA, Abashina TN.	Microorganisms	10.3390/microorganisms10010128	2022
	Biodegradation modeling of phenol using Curtobacterium flaccumfaciens as plant-growth-promoting bacteria.	Khleifat K, Magharbeh M, Alqaraleh M, Al-Sarayrah M, Alfarrayeh I, Al Qaisi Y, Alsarayreh A, Alkafaween M.	Heliyon	10.1016/j.heliyon.2022.e10490	2022
Genetics	Genomic Characterization of VIM Metallo-beta-Lactamase-Producing Alcaligenes faecalis from Gaza, Palestine.	Al Laham N, Chavda KD, Cienfuegos-Gallet AV, Kreiswirth BN, Chen L.	Antimicrob Agents Chemother	10.1128/aac.01499-17	2017
Metabolism	Biotransformation of arsenite and bacterial aox activity in drinking water produced from surface water of floating houses: Arsenic contamination in Cambodia.	Chang JS.	Environ Pollut	10.1016/j.envpol.2015.07.027	2015
	Plant-Microbe Interactions under the Extreme Habitats and Their Potential Applications.	Tiwari P, Bose SK, Park KI, Dufosse L, Fouillaud M.	Microorganisms	10.3390/microorganisms12030448	2024
Phylogeny	Culture-Independent and Culture-Dependent Characterization of the Black Soldier Fly Gut Microbiome Reveals a Large Proportion of Culturable Bacteria with Potential for Industrial Applications.	Tegtmeier D, Hurka S, Mihajlovic S, Bodenschatz M, Schlimbach S, Vilcinskas A.	Microorganisms	10.3390/microorganisms9081642	2021
Enzymology	Bacterial and fungal contamination risks in human oocyte and embryo cryopreservation: open versus closed vitrification systems.	Molina I, Mari M, Martinez JV, Novella-Maestre E, Pellicer N, Peman J.	Fertil Steril	10.1016/j.fertnstert.2016.03.024	2016
	Metagenomic nanopore sequencing for exploring the nature of antimicrobial metabolites of Bacillus haynesii.	Eltokhy MA, Saad BT, Eltayeb WN, Alshahrani MY, Radwan SMR, Aboshanab KM, Ashour MSE.	AMB Express	10.1186/s13568-024-01701-8	2024
Enzymology	Identification of new bacteria harboring qnrS and aac(6')-Ib/cr and mutations possibly involved in fluoroquinolone resistance in raw sewage and activated sludge samples from a full-scale WWTP.	Paiva MC, Reis MP, Costa PS, Dias MF, Bleicher L, Scholte LLS, Nardi RMD, Nascimento AMA.	Water Res	10.1016/j.watres.2016.11.056	2017
	The Use of Medical Grade Honey on Infected Chronic Diabetic Foot Ulcers-A Prospective Case-Control Study.	Holubova A, Chlupacova L, Krocova J, Cetlova L, Peters LJF, Cremers NAJ, Pokorna A.	Antibiotics (Basel)	10.3390/antibiotics12091364	2023
	A systematic review and meta-analysis of carbapenem resistance and its possible treatment options with focus on clinical Enterobacteriaceae: Thirty years of development in Pakistan.	Umair M, Walsh TR, Mohsin M.	Heliyon	10.1016/j.heliyon.2024.e28052	2024
	The type 1 copper site of pseudoazurin: axial and rhombic.	Gast P, Broeren FG, Sottini S, Aoki R, Takashina A, Yamaguchi T, Kohzuma T, Groenen EJ.	J Inorg Biochem	10.1016/j.jinorgbio.2014.03.016	2014
	Characterization of mineral phosphate-solubilizing bacteria for enhanced sunflower growth and yield-attributing traits	Shahid M, Hameed S, Tariq M, Zafar M, Ali A, Ahmad N, Ahmad N.	Ann Microbiol	10.1007/s13213-014-0991-z	2015
Pathogenicity	Early Life Intervention Using Probiotic Clostridium butyricum Improves Intestinal Development, Immune Response, and Gut Microbiota in Large Yellow Croaker (Larimichthys crocea) Larvae.	Yin Z, Liu Q, Liu Y, Gao S, He Y, Yao C, Huang W, Gong Y, Mai K, Ai Q.	Front Immunol	10.3389/fimmu.2021.640767	2021
	Characterization of Pathogenic Bacteria Isolated from Sudanese Banknotes and Determination of Their Resistance Profile.	Abd Alfadil NA, Suliman Mohamed M, Ali MM, El Nima EAI.	Int J Microbiol	10.1155/2018/4375164	2018
	Isolation and identification of Rhizospheric and Endophytic Bacteria from Cucumber plants irrigated with wastewater: Exploring their roles in plant growth promotion and disease suppression.	Shreshtha K, Raj S, Pal AK, Tripathi P, Choudhary KK, Mitra D, Rani A, Santos-Villalobos SL, Tripathi V.	Curr Res Microb Sci	10.1016/j.crmicr.2024.100256	2024
	[Screening, combination of microbial deodorizer and the optimization of its deodorizing conditions].	Zeng S, Li NH, Sheng HC, He K, Hu ZQ.	Huan Jing Ke Xue		2015
	Is Africa ready for mobile colistin resistance threat?	Anyanwu MU, Jaja IF, Oguttu JW, Jaja CJ, Chah KF, Shodeinde Shoyinka V.	Infect Ecol Epidemiol	10.1080/20008686.2021.1962781	2021
	Novel, cold-adapted D-laminaribiose- and D-glucose-releasing GH16 endo-beta-1,3-glucanase from Hymenobacter siberiensis PAMC 29290, a psychrotolerant bacterium from Arctic marine sediment.	Kim DY, Lee YM, Lee JS, Chung CW, Son KH.	Front Microbiol	10.3389/fmicb.2024.1470106	2024
Metabolism	Effect of nitrogen source on curdlan production by Alcaligenes faecalis ATCC 31749.	Jiang L.	Int J Biol Macromol	10.1016/j.ijbiomac.2012.10.010	2013
Metabolism	Biodegradation of organochlorine pesticide endosulfan by bacterial strain Alcaligenes faecalis JBW4.	Kong L, Zhu S, Zhu L, Xie H, Su K, Yan T, Wang J, Wang J, Wang F, Sun F.	J Environ Sci (China)	10.1016/s1001-0742(12)60288-5	2013
	Profile of stingless bee honey and microbiota produced in West Sumatra, Indonesia, by several species (Apidae, Meliponinae).	Melia S, Juliyarsi I, Kurnia YF, Aritonang SN, Rusdimansyah R, Sukma A, Setiawan RD, Pratama YE, Supandil D.	Vet World	10.14202/vetworld.2024.785-795	2024
	Selenium nanoparticles based on Amphipterygium glaucum extract with antibacterial, antioxidant, and plant biostimulant properties.	Garza-Garcia JJO, Hernandez-Diaz JA, Leon-Morales JM, Velazquez-Juarez G, Zamudio-Ojeda A, Arratia-Quijada J, Reyes-Maldonado OK, Lopez-Velazquez JC, Garcia-Morales S.	J Nanobiotechnology	10.1186/s12951-023-02027-6	2023
	Antimicrobial Activity of Essential Oils in Vapor Phase In Vitro and Its Application in Combination with Lactic Acid to Improve Chicken Breast Shelf Life.	Rivera de la Cruz JF, Schelegueda LI, Delcarlo SB, Gliemmo MF, Campos CA.	Foods	10.3390/foods12224127	2023
	3-(Methylthio)Propionic Acid from Bacillus thuringiensis Berliner Exhibits High Nematicidal Activity against the Root Knot Nematode Meloidogyne incognita (Kofoid and White) Chitwood.	Chen L, Wang Y, Zhu L, Min Y, Tian Y, Gong Y, Liu X.	Int J Mol Sci	10.3390/ijms25031708	2024
Biotechnology	Potential probiotic attributes and antagonistic activity of an indigenous isolate Lactobacillus plantarum DM5 from an ethnic fermented beverage "Marcha" of north eastern Himalayas.	Das D, Goyal A.	Int J Food Sci Nutr	10.3109/09637486.2013.869792	2014
	Potential pathogens drive ARGs enrichment during biofilms formation on environmental surfaces.	Zheng Z, Gong Z, Zhang R, Lin X, Hong W, Song L.	ISME Commun	10.1093/ismeco/ycaf057	2025
	An XDR Pseudomonas aeruginosa ST463 Strain with an IncP-2 Plasmid Containing a Novel Transposon Tn6485f Encoding bla_IMP-45 and bla_AFM-1 and a Second Plasmid with Two Copies of bla_KPC-2.	Fang Y, Wang N, Wu Z, Zhu Y, Ma Y, Li Y, Cai H, Zhang P, Leptihn S, Yu Y, Hua X, Tu Y.	Microbiol Spectr	10.1128/spectrum.04462-22	2023
	Microbiological, Clinical and Radiological Aspects of Diabetic Foot Ulcers Infected with Methicillin-Resistant and -Sensitive Staphylococcus aureus.	Stankowska M, Garbacz K, Korzon-Burakowska A, Bronk M, Skotarczak M, Szymanska-Dubowik A.	Pathogens	10.3390/pathogens11060701	2022
Enzymology	Enantioselective acylation of beta-phenylalanine acid and its derivatives catalyzed by penicillin G acylase from Alcaligenes faecalis.	Li D, Ji L, Wang X, Wei D.	Prep Biochem Biotechnol	10.1080/10826068.2012.719847	2013
Metabolism	Inoculation of heavy metal resistant bacteria alleviated heavy metal-induced oxidative stress biomarkers in spinach (Spinacia oleracea L.).	Jamil M, Malook I, Rehman SU, Aslam MM, Fayyaz M, Shah G, Kaplan A, Khan MN, Ali B, Roy R, Ercisli S, Harakeh S, Moulay M, Javed MA, Abeed AHA.	BMC Plant Biol	10.1186/s12870-024-04757-7	2024
	Phenotypic and genotypic characterization of extended spectrum beta-lactamase producing E. coli harboring carbapenem and colistin-resistant genes from poultry farms in Egypt.	Ali RI, El-Abdelaziz SA, Kamel MA, Murad SK, Abdallah HM, Salem GA.	Open Vet J	10.5455/ovj.2024.v14.i1.42	2024
	Differential Microbial Diversity in Drosophila melanogaster: Are Fruit Flies Potential Vectors of Opportunistic Pathogens?	Ramirez-Camejo LA, Maldonado-Morales G, Bayman P.	Int J Microbiol	10.1155/2017/8526385	2017
	Dectin-1-targeted pH-responsive liposomal nanoplatform delivering Plantago Asiatica L. acidic polysaccharide for immunomodulation and immunosuppressive breast cancer microenvironment reprogramming.	Pan W, Li C, Zhou X, Liu W, Liu J, Lin Q, Huang J, Hao Z, Jiang Y, Lin J.	J Nanobiotechnology	10.1186/s12951-025-03638-x	2025
	Reconstruction and metabolic profiling of the genome-scale metabolic network model of Pseudomonas stutzeri A1501.	Yuan Q, Wei F, Deng X, Li A, Shi Z, Mao Z, Li F, Ma H.	Synth Syst Biotechnol	10.1016/j.synbio.2023.10.001	2023
Genetics	Complete genome sequence of Rhodococcus sp. NJ-530, a DMSP-degrading actinobacterium isolated from Antarctic sea ice.	Qu C, Wang W, Dong J, Wang X, Gao X, Zhang H, Zheng Z, Yin H, Miao J.	3 Biotech	10.1007/s13205-019-1889-z	2019
	A Newly Sequenced Alcaligenes faecalis Strain: Implications for Novel Temporal Symbiotic Relationships.	Hernandez-Mendoza A, Lozano-Aguirre Beltran LF, Martinez-Ocampo F, Quiroz-Castaneda RE, Dantan-Gonzalez E.	Genome Announc	10.1128/genomea.01246-14	2014
	Exploring the Potentiality of Novel Rhizospheric Bacterial Strains against the Rice Blast Fungus Magnaporthe oryzae.	Amruta N, Prasanna Kumar MK, Puneeth ME, Sarika G, Kandikattu HK, Vishwanath K, Narayanaswamy S.	Plant Pathol J	10.5423/ppj.oa.11.2017.0242	2018
Metabolism	Nitrilase-catalyzed conversion of (R,S)-mandelonitrile by immobilized recombinant Escherichia coli cells harboring nitrilase.	Zhang XH, Liu ZQ, Xue YP, Xu M, Zheng YG.	Biotechnol Appl Biochem	10.1002/bab.1402	2016
	The Human Health Implications of Antibiotic Resistance in Environmental Isolates from Two Nebraska Watersheds.	Donner L, Staley ZR, Petali J, Sangster J, Li X, Mathews W, Snow D, Howe A, Soupir M, Bartelt-Hunt S.	Microbiol Spectr	10.1128/spectrum.02082-21	2022
	Antioxidant and Antibacterial Activity of Caprylic Acid Vanillyl Ester Produced by Lipase-Mediated Transesterification.	Kim JJ, Kim HK.	J Microbiol Biotechnol	10.4014/jmb.2010.10018	2021
	Appeal: the protection of ancient tree species around the world, taking qilian juniper (Juniperus przewalskii) as an example.	Zhao W, Yang H, Tang J.	Heliyon	10.1016/j.heliyon.2022.e10232	2022
	Serpin-4 Negatively Regulates Prophenoloxidase Activation and Antimicrobial Peptide Synthesis in the Silkworm, Bombyx mori.	Qie X, Yan X, Wang W, Liu Y, Zhang L, Hao C, Lu Z, Ma L.	Int J Mol Sci	10.3390/ijms25010313	2023
	Emerging crops and plant growth-promoting bacteria (PGPB): a synergistic approach to climate-resilient agriculture.	Perez-Montano F, Aparicio N, Arenas F, Arjona JM, Camacho M, Fernandez-Garcia N, Garcia-Fraile P, Goicoechea N, Macias-Naranjo S, Matias J, Montero-Calasanz MDC, Morte A, Olmos E, Pueyo JJ, Quinones MA, Rey L, Reguera M.	Microbiome	10.1186/s40168-025-02225-4	2025
Metabolism	Effect of Tween 80 on the production of curdlan by Alcaligenes faecalis ATCC 31749.	Xia Z.	Carbohydr Polym	10.1016/j.carbpol.2013.05.073	2013
Enzymology	Specific and sensitive detection of Alcaligenes species from an agricultural environment.	Nakano M, Niwa M, Nishimura N.	Microbiol Immunol	10.1111/1348-0421.12026	2013
	Intranasal Vaccination with rePcrV Protects against Pseudomonas aeruginosa and Generates Lung Tissue-Resident Memory T Cells.	Ou Y, Wang Y, Yu T, Cui Z, Chen X, Zhang W, Zou Q, Gu J, Zuo Q.	J Immunol Res	10.1155/2022/1403788	2022
	Conversion of acetate and glyoxylate to fumarate by a cell-free synthetic enzymatic biosystem.	Hou C, Tian L, Lian G, Fan LH, Li ZJ.	Synth Syst Biotechnol	10.1016/j.synbio.2023.03.004	2023
Metabolism	Utilization of microbial community potential for removal of chlorpyrifos: a review.	Yadav M, Shukla AK, Srivastva N, Upadhyay SN, Dubey SK.	Crit Rev Biotechnol	10.3109/07388551.2015.1015958	2016
Genetics	Genomic Insights of Wheat Root-Associated Lysinibacillus fusiformis Reveal Its Related Functional Traits for Bioremediation of Soil Contaminated with Petroleum Products.	Diabankana RGC, Zhamalbekova AA, Shakirova AE, Vasiuk VI, Filimonova MN, Validov SZ, Safin RI, Afordanyi DM.	Microorganisms	10.3390/microorganisms12112377	2024
	Towards Understanding the Function of Aegerolysins.	Krasevec N, Skocaj M.	Toxins (Basel)	10.3390/toxins14090629	2022
	Conventional tobacco products harbor unique and heterogenous microbiomes.	Chattopadhyay S, Ramachandran P, Malayil L, Mongodin EF, Sapkota AR.	Environ Res	10.1016/j.envres.2022.115205	2023
Metabolism	Rhizoma Coptidis alkaloids alleviate hyperlipidemia in B6 mice by modulating gut microbiota and bile acid pathways.	He K, Hu Y, Ma H, Zou Z, Xiao Y, Yang Y, Feng M, Li X, Ye X.	Biochim Biophys Acta	10.1016/j.bbadis.2016.06.006	2016
Metabolism	First Glimpse into the Genomic Characterization of People from the Imperial Roman Community of Casal Bertone (Rome, First-Third Centuries AD).	De Angelis F, Romboni M, Veltre V, Catalano P, Martinez-Labarga C, Gazzaniga V, Rickards O.	Genes (Basel)	10.3390/genes13010136	2022
	Occurrence of Potentially Pathogenic Bacteria in Epilithic Biofilm Forming Bacteria isolated from Porter Brook River-stones, Sheffield, UK.	Alotaibi GF.	Saudi J Biol Sci	10.1016/j.sjbs.2020.09.030	2020
	Antimicrobial Properties of Chilean Native Plants: Future Aspects in Their Application in the Food Industry.	Otero MC, Fuentes JA, Atala C, Cuadros-Orellana S, Fuentes C, Gordillo-Fuenzalida F.	Foods	10.3390/foods11121763	2022
	Biotechnological interventions for the production of forskolin, an active compound from the medicinal plant, Coleus forskohlii.	Roshni PT, Rekha PD.	Physiol Mol Biol Plants	10.1007/s12298-024-01426-9	2024
	Direct ammonium oxidation to nitrogen gas (Dirammox) in Alcaligenes strain HO-1: The electrode role.	Pous N, Baneras L, Corvini PF, Liu SJ, Puig S.	Environ Sci Ecotechnol	10.1016/j.ese.2023.100253	2023
	High-Throughput Microbial Community Analyses to Establish a Natural Fungal and Bacterial Consortium from Sewage Sludge Enriched with Three Pharmaceutical Compounds.	Ledezma-Villanueva A, Robledo-Mahon T, Gomez-Silvan C, Angeles-De Paz G, Pozo C, Manzanera M, Calvo C, Aranda E.	J Fungi (Basel)	10.3390/jof8070668	2022
Enzymology	Selective enrichment of heterotrophic nitrifiers Alcaligenaceae and Alcanivorax spp. from industrial wastewaters.	Kalnins M, Berzins A, Gudra D, Megnis K, Fridmanis D, Danilko P, Muter O.	AIMS Microbiol	10.3934/microbiol.2020002	2020
	Single-Sampling Strategy vs. Multi-Sampling Strategy for Blood Cultures in Sepsis: A Prospective Non-inferiority Study.	Yu D, Larsson A, Parke A, Unge C, Henning C, Sunden-Cullberg J, Somell A, Stralin K, Ozenci V.	Front Microbiol	10.3389/fmicb.2020.01639	2020
	Insights into the biosynthesis of palladium nanoparticles for oxygen reduction reaction by genetically engineered bacteria of Shewanella oneidensis MR-1.	Li S, Huang J, Tong L, Li Q, Zhou H, Deng X, Zhou J, Xie Z, Liu X, Liang Y.	Microb Biotechnol	10.1111/1751-7915.14469	2024
Enzymology	Bacterial community structure in treated sewage sludge with mesophilic and thermophilic anaerobic digestion.	Stiborova H, Wolfram J, Demnerova K, Macek T, Uhlik O.	Folia Microbiol (Praha)	10.1007/s12223-015-0396-9	2015
Pathogenicity	Antibiotic-resistant heterotrophic plate count bacteria and amoeba-resistant bacteria in aquifers of the Mooi River, North West province, South Africa.	Carstens A, Bartie C, Dennis R, Bezuidenhout C.	J Water Health	10.2166/wh.2014.226	2014
	Isolation, partial purification, biochemical characterization and detergent compatibility of alkaline protease produced by Bacillus subtilis, Alcaligenes faecalis and Pseudomonas aeruginosa obtained from sea water samples.	Marathe SK, Vashistht MA, Prashanth A, Parveen N, Chakraborty S, Nair SS.	J Genet Eng Biotechnol	10.1016/j.jgeb.2017.10.001	2018
	Variants of beta-glucan polysaccharides downregulate autoimmune inflammation.	Fahlquist-Hagert C, Sareila O, Rosendahl S, Holmdahl R.	Commun Biol	10.1038/s42003-022-03376-y	2022
	Identification and nematicidal activity of bacteria isolated from cow dung	Lu H, Wang X, Zhang K, Xu Y, Zhou L, Li G.	Ann Microbiol	10.1007/s13213-013-0660-7	2014
Metabolism	Induction of immune-related gene expression in Ctenopharyngodon idella kidney cells by secondary metabolites from immunostimulatory Alcaligenes faecalis FY-3.	Wu ZF, Liu GL, Zhou Z, Wang GX, Xia L, Liu JL.	Scand J Immunol	10.1111/j.1365-3083.2012.02722.x	2012
	New molecular packing in a crystal of pseudoazurin from Alcaligenes faecalis: a double-helical arrangement of blue copper.	Fukuda Y, Mizohata E, Inoue T.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x17002631	2017
	Snakebite-Associated Infections: A Systematic Review and Meta-Analysis.	Bonilla-Aldana DK, Bonilla-Aldana JL, Ulloque-Badaracco JR, Al-Kassab-Cordova A, Hernandez-Bustamante EA, Alarcon-Braga EA, Siddiq A, Benites-Zapata VA, Rodriguez-Morales AJ, Luna C, Suarez JA.	Am J Trop Med Hyg	10.4269/ajtmh.23-0278	2024
Metabolism	N2O and N2 production during heterotrophic nitrification by Alcaligenes faecalis strain NR.	Zhao B, An Q, He YL, Guo JS.	Bioresour Technol	10.1016/j.biortech.2012.03.113	2012
	Enzymatic post-consumer poly(ethylene terephthalate) (PET) depolymerization using commercial enzymes.	Brackmann R, de Oliveira Veloso C, de Castro AM, Langone MAP.	3 Biotech	10.1007/s13205-023-03555-6	2023
Metabolism	Removal of Microcystin-LR by a Novel Native Effective Bacterial Community Designated as YFMCD4 Isolated from Lake Taihu.	Yang F, Guo J, Huang F, Massey IY, Huang R, Li Y, Wen C, Ding P, Zeng W, Liang G.	Toxins (Basel)	10.3390/toxins10090363	2018
Metabolism	A Novel Degradation Mechanism for Pyridine Derivatives in Alcaligenes faecalis JQ135.	Qiu J, Liu B, Zhao L, Zhang Y, Cheng D, Yan X, Jiang J, Hong Q, He J.	Appl Environ Microbiol	10.1128/aem.00910-18	2018
	Effect of Essential Oils and Dried Herbs on the Shelf Life of Fresh Goat Lump Cheese.	Kacaniova M, Joanidis P, Lakatosova J, Kunova S, Benesova L, Ikromi K, Akhmedov F, Boboev K, Gulmahmad M, Niyatbekzoda F, Toshkhodjaev N, Bobokalonov F, Kamolov N, Cmikova N.	Foods	10.3390/foods13132016	2024
Enzymology	Optimization, purification and characterization of laccase from a new endophytic Trichoderma harzianum AUMC14897 isolated from Opuntia ficus-indica and its applications in dye decolorization and wastewater treatment.	Salem MM, Mohamed TM, Shaban AM, Mahmoud YA, Eid MA, El-Zawawy NA.	Microb Cell Fact	10.1186/s12934-024-02530-x	2024
Metabolism	High-throughput system for screening of Cephalosporin C high-yield strain by 48-deep-well microtiter plates.	Tan J, Chu J, Hao Y, Guo Y, Zhuang Y, Zhang S.	Appl Biochem Biotechnol	10.1007/s12010-013-0095-4	2013
Pathogenicity	Dietary Curdlan Enhances Bifidobacteria and Reduces Intestinal Inflammation in Mice.	Rahman S, Davids M, van Hamersveld PHP, Welting O, Rahaoui H, Schuren F, Meijer SL, van den Wijngaard RM, Hakvoort TBM, de Jonge WJ, Heinsbroek SEM.	Nutrients	10.3390/nu13041305	2021
	Application of Iron Nanoparticles Synthesized from a Bioflocculant Produced by Yeast Strain Pichia kudriavzevii Obtained from Kombucha Tea SCOBY in the Treatment of Wastewater.	Tsilo PH, Basson AK, Ntombela ZG, Dlamini NG, Pullabhotla RVSR.	Int J Mol Sci	10.3390/ijms241914731	2023
	High prevalence of multidrug-resistant Gram-negative bacterial infections in Northwest Nigeria.	Olowo-Okere A, Ibrahim YKE, Nabti LZ, Olayinka BO.	Germs	10.18683/germs.2020.1223	2020
Enzymology	The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c₅₅₂.	Poddar N, Santini JM, Maher MJ.	Acta Crystallogr D Struct Biol	10.1107/s2059798323002103	2023
Metabolism	Selenium nanoparticle rapidly synthesized by a novel highly selenite-tolerant strain Proteus penneri LAB-1.	Wang M, Jiang D, Huang X.	iScience	10.1016/j.isci.2022.104904	2022
	Gypsum-Related Impact on Antibiotic-Loaded Composite Based on Highly Porous Hydroxyapatite-Advantages and Disadvantages.	Zalewska J, Vivcharenko V, Belcarz A.	Int J Mol Sci	10.3390/ijms242417178	2023
	Multidrug-Resistant Bacteria Associated with Cell Phones of Healthcare Professionals in Selected Hospitals in Saudi Arabia.	Banawas S, Abdel-Hadi A, Alaidarous M, Alshehri B, Bin Dukhyil AA, Alsaweed M, Aboamer M.	Can J Infect Dis Med Microbiol	10.1155/2018/6598918	2018
Enzymology	Development of a PCR-based method for monitoring the status of Alcaligenes species in the agricultural environment.	Nakano M, Niwa M, Nishimura N.	Biocontrol Sci	10.4265/bio.19.23	2014
	Effects of long-term administration of various dietary prebiotic supplements on the growth, immune cell activity and digestive tract histology of juvenile vimba (Vimba vimba).	Kazun B, Kazun K, Malaczewska J, Kaminski R, Adamek-Urbanska D, Sikorska J, Wolnicki J, Szudrowicz H.	J Vet Res	10.2478/jvetres-2023-0033	2023
Pathogenicity	Reconstruction of Gut Bacteria in Spodoptera frugiperda Infected by Beauveria bassiana Affects the Survival of Host Pest.	Peng Y, Wen S, Wang G, Zhang X, Di T, Du G, Chen B, Zhang L.	J Fungi (Basel)	10.3390/jof9090906	2023
Metabolism	Antimicrobial activities of Bacillus velezensis strains isolated from stingless bee products against methicillin-resistant Staphylococcus aureus.	Baharudin MMA, Ngalimat MS, Mohd Shariff F, Balia Yusof ZN, Karim M, Baharum SN, Sabri S.	PLoS One	10.1371/journal.pone.0251514	2021
	Potential of Bacterial Strains Isolated from Coastal Water for Wastewater Treatment and as Aqua-Feed Additives.	Kim K, Jung JY, Kwon JH.	Microorganisms	10.3390/microorganisms9122441	2021
	ISCCM Position Statement on the Management of Invasive Fungal Infections in the Intensive Care Unit.	Bhattacharya PK, Chakrabarti A, Sinha S, Pande R, Gupta S, Kumar AA, Mishra VK, Kumar S, Bhosale S, Reddy PK.	Indian J Crit Care Med	10.5005/jp-journals-10071-24747	2024
	Investigating the mechanism of interfacial tension reduction through the combination of low-salinity water and bacteria.	Abdi A, Ranjbar B, Kazemzadeh Y, Aram F, Riazi M.	Sci Rep	10.1038/s41598-024-62255-0	2024
Metabolism	Biodegradation and detoxification of melanoidin from distillery effluent using an aerobic bacterial strain SAG5 of Alcaligenes faecalis.	Santal AR, Singh NP, Saharan BS.	J Hazard Mater	10.1016/j.jhazmat.2011.07.068	2011
	The crystal structure of cobalt-substituted pseudoazurin from Alcaligenes faecalis.	Gessmann R, Kyvelidou C, Papadovasilaki M, Petratos K.	Biopolymers	10.1002/bip.21553	2011
	Antifungal Activity of Selenium Nanoparticles Obtained by Plant-Mediated Synthesis.	Lazcano-Ramirez HG, Garza-Garcia JJO, Hernandez-Diaz JA, Leon-Morales JM, Macias-Sandoval AS, Garcia-Morales S.	Antibiotics (Basel)	10.3390/antibiotics12010115	2023
	Synthesis and application of a phenazine class substrate for high-throughput screening of laccase activity.	Babinskas J, Sabotic J, Matijosyte I.	Appl Microbiol Biotechnol	10.1007/s00253-023-12958-7	2024
Biotechnology	Mechanisms of Arsenic Interaction in Bacillus subtilis and Related Species with Biotechnological Potential.	Valenzuela-Garcia LI, Alarcon-Herrera MT, Cisneros-Lozano E, Pedraza-Reyes M, Ayala-Garcia VM.	Int J Mol Sci	10.3390/ijms262110277	2025
	A review on arsenic in the environment: bio-accumulation, remediation, and disposal.	Patel KS, Pandey PK, Martin-Ramos P, Corns WT, Varol S, Bhattacharya P, Zhu Y.	RSC Adv	10.1039/d3ra02018e	2023
Metabolism	A novel synthesis of iminodiacetic acid: biocatalysis by whole Alcaligenes faecalis ZJB-09133 cells from iminodiacetonitrile.	Liu ZQ, Li FF, Cheng F, Zhang T, You ZY, Xu JM, Xue YP, Zheng YG, Shen YC.	Biotechnol Prog	10.1002/btpr.603	2011
	Actinotignum schaalii: Relation to Concomitants and Connection to Patients' Conditions in Polymicrobial Biofilms of Urinary Tract Catheters and Urines.	Kotaskova I, Syrovatka V, Obrucova H, Videnska P, Zwinsova B, Hola V, Blastikova E, Ruzicka F, Freiberger T.	Microorganisms	10.3390/microorganisms9030669	2021
Pathogenicity	Effect of Vitamin C/Hydrocortisone Immobilization within Curdlan-Based Wound Dressings on In Vitro Cellular Response in Context of the Management of Chronic and Burn Wounds.	Wojcik M, Kazimierczak P, Vivcharenko V, Koziol M, Przekora A.	Int J Mol Sci	10.3390/ijms222111474	2021
	First Report of the Colistin Resistance Gene mcr-10.1 Carried by Inc_pA1763-KPC Plasmid pSL12517-mcr10.1 in Enterobacter cloacae in Sierra Leone.	Guan J, Li L, Zheng L, Lu G, Wang Y, Lakoh S, Sevalie S, Jiang B, Ji X, Sun Y, Liu J, Zhu L, Guo X.	Microbiol Spectr	10.1128/spectrum.01127-22	2022
	Immunostimulatory activities of a decapeptide derived from Alcaligenes faecalis FY-3 to crucian carp.	Wang GX, Li FY, Cui J, Wang Y, Liu YT, Han J, Lei Y.	Scand J Immunol	10.1111/j.1365-3083.2011.02533.x	2011
	Biocides with Controlled Degradation for Environmentally Friendly and Cost-Effective Fecal Sludge Management.	Loiko N, Kanunnikov O, Tereshkina K, Pankratov T, Belova S, Botchkova E, Vishnyakova A, Litti Y.	Biology (Basel)	10.3390/biology12010045	2022
	Serine Protease Networks Mediate Immune Responses in Extra-Embryonic Tissues of Eggs in the Tobacco Hornworm, Manduca sexta.	Shan T, Wang Y, Dittmer NT, Kanost MR, Jiang H.	J Innate Immun	10.1159/000527974	2023
	Investigating the Immune-Stimulating Potential of beta-Glucan from Aureobasidium pullulans in Cancer Immunotherapy.	Jeong JH, Kim DJ, Hong SJ, Ahn JH, Lee DJ, Jang AR, Kim S, Cho HJ, Lee JY, Park JH, Kim YM, Ko HJ.	Biomol Ther (Seoul)	10.4062/biomolther.2024.047	2024
	Intravaginal injection of Lactobacillus johnsonii may modulates oviductal microbiota and mucosal barrier function of laying hens.	Nii T, Shinkoda T, Isobe N, Yoshimura Y.	Poult Sci	10.1016/j.psj.2023.102699	2023
	Two Distinct Bacterial Biofilm Components Trigger Metamorphosis in the Colonial Hydrozoan Hydractinia echinata.	Guo H, Rischer M, Westermann M, Beemelmanns C.	mBio	10.1128/mbio.00401-21	2021
	A retrospective study of the incidence, clinical characteristics, identification, and antimicrobial susceptibility of bacteremic isolates of Acinetobacter ursingii.	Chiu CH, Lee YT, Wang YC, Yin T, Kuo SC, Yang YS, Chen TL, Lin JC, Wang FD, Fung CP.	BMC Infect Dis	10.1186/s12879-015-1145-z	2015
Metabolism	Enzymatic reduction of levulinic acid by engineering the substrate specificity of 3-hydroxybutyrate dehydrogenase.	Yeon YJ, Park HY, Yoo YJ.	Bioresour Technol	10.1016/j.biortech.2013.01.078	2013
	Carbohydrate deacetylase, a key enzyme in oxidative chitin degradation, is evolutionarily linked to amino acid deacetylase.	Wang JP, Zhao XM, Liu XL, Jiang WX, Gao C, Cao HY, Ding HT, Qin QL, Chen XL, Zhang YZ, Li PY.	J Biol Chem	10.1016/j.jbc.2025.108420	2025
Metabolism	Pyruvic oxime dioxygenase from heterotrophic nitrifier Alcaligenes faecalis is a nonheme Fe^(II)-dependent enzyme homologous to class II aldolase.	Tsujino S, Uematsu C, Dohra H, Fujiwara T.	Sci Rep	10.1038/srep39991	2017
	Eugenol and Aloe vera blended natural wax-based coating for preserving postharvest quality of Kaji lemon (Citrus jambhiri).	Das B, Devi LS, Dutta J, Kumar S.	Food Chem X	10.1016/j.fochx.2024.101349	2024
	Low temperature preservation of porcine semen: influence of short antimicrobial lipopeptides on sperm quality and bacterial load.	Hensel B, Jakop U, Scheinpflug K, Muhldorfer K, Schroter F, Schafer J, Greber K, Jung M, Schulze M.	Sci Rep	10.1038/s41598-020-70180-1	2020
Enzymology	Mechanism of soil bacteria (Cupriavidus sp. LA-1) for degrading natural pterin and lumazine pigments	Doi Y, Maeda N, Takaya N.	Commun Biol		2025
Enzymology	Biotransformation of protein-rich waste by Yarrowia lipolytica IPS21 to high-value products-amino acid supernatants.	Wieczorek D, Gendaszewska D, Miskiewicz K, Slubik A, Lawinska K.	Microbiol Spectr	10.1128/spectrum.02749-23	2023
Metabolism	Isolation of an indigenous imidacloprid-degrading bacterium and imidacloprid bioremediation under simulated in situ and ex situ conditions.	Hu G, Zhao Y, Liu B, Song F, You M.	J Microbiol Biotechnol	10.4014/jmb.1305.05048	2013
Pathogenicity	Ochratoxin A: Overview of Prevention, Removal, and Detoxification Methods.	Ding L, Han M, Wang X, Guo Y.	Toxins (Basel)	10.3390/toxins15090565	2023
Enzymology	Characterization of an Indole-3-Acetamide Hydrolase from Alcaligenes faecalis subsp. parafaecalis and Its Application in Efficient Preparation of Both Enantiomers of Chiral Building Block 2,3-Dihydro-1,4-Benzodioxin-2-Carboxylic Acid.	Mishra P, Kaur S, Sharma AN, Jolly RS.	PLoS One	10.1371/journal.pone.0159009	2016
Metabolism	Heterotrophic nitrifying and oxygen tolerant denitrifying bacteria from greenwater system of coastal aquaculture.	Velusamy K, Krishnani KK.	Appl Biochem Biotechnol	10.1007/s12010-013-0109-2	2013
	Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems.	Efremenko E, Stepanov N, Senko O, Aslanli A, Maslova O, Lyagin I.	Microorganisms	10.3390/microorganisms12030470	2024
	A program to improve the quality of dental unit water in a medical center.	Chang SP, Jiang HL, Wang YC, Chao HC, Lee JJ, Chung HC, Wang LS, Ding DC, Ding DC.	Medicine (Baltimore)	10.1097/md.0000000000028019	2021
	Assessment of adaptive immune responses of dairy cows with Burkholderia contaminans-induced mastitis.	Zhang Z, Yao Y, Yang J, Jiang H, Meng Y, Cao W, Zhou F, Wang K, Yang Z, Yang C, Sun J, Yang Y.	Front Microbiol	10.3389/fmicb.2023.1099623	2023
	Bioremediation of chlorpyrifos residues using some indigenous species of bacteria and fungi in wastewater.	Elzakey EM, El-Sabbagh SM, Eldeen EEN, Adss IA, Nassar AMK.	Environ Monit Assess	10.1007/s10661-023-11341-3	2023
Metabolism	Biocatalytic synthesis of (R)-(-)-mandelic acid from racemic mandelonitrile by cetyltrimethylammonium bromide-permeabilized cells of Alcaligenes faecalis ECU0401.	He YC, Zhang ZJ, Xu JH, Liu YY.	J Ind Microbiol Biotechnol	10.1007/s10295-010-0720-y	2010
	Successful diagnosis and treatment of pulmonary aspergillosis-related malignant catatonia using propofol and quetiapine: A case report.	Nomura K, Sakawaki S, Sakawaki E, Yamaoka A, Aisaka W, Okamoto H, Takeyama Y, Uemura S, Narimatsu E.	Medicine (Baltimore)	10.1097/md.0000000000025967	2021
	Caenorhabditis elegans-based in vivo screening of bioactives from marine sponge-associated bacteria against Vibrio alginolyticus.	Durai S, Vigneshwari L, Balamurugan K.	J Appl Microbiol	10.1111/jam.12335	2013
	Exploring the Antimicrobial, Antioxidant, and Antiviral Potential of Eco-Friendly Synthesized Silver Nanoparticles Using Leaf Aqueous Extract of Portulaca oleracea L.	Abdel-Rahman MA, Alshallash KS, Eid AM, Hassan SE, Salih M, Hamza MF, Fouda A.	Pharmaceuticals (Basel)	10.3390/ph17030317	2024
	Antifungal Properties of Biogenic Selenium Nanoparticles Functionalized with Nystatin for the Inhibition of Candida albicans Biofilm Formation.	Nile SH, Thombre D, Shelar A, Gosavi K, Sangshetti J, Zhang W, Sieniawska E, Patil R, Kai G.	Molecules	10.3390/molecules28041836	2023
	Improving sunflower growth and arsenic bioremediation in polluted environments: Insights from ecotoxicology and sustainable mitigation approaches.	Qadir M, Hussain A, Shah M, Hamayun M, Al-Huqail AA, Iqbal A, Ali S.	Heliyon	10.1016/j.heliyon.2024.e33078	2024
	Ethanol extract of Schinus molle L. (Molle) and Erythroxylum coca Lam (Coca): Antibacterial Properties at Different Concentrations against Streptococcus mutans: An In Vitro Study.	Loyola D, Mendoza R, Chiong L, Rueda M, Alvitez-Temoche D, Gallo W, Mayta-Tovalino F.	J Int Soc Prev Community Dent	10.4103/jispcd.jispcd_237_20	2020
Metabolism	Microbial population responses to pH and salt shock during phenols degradation under high salt conditions revealed by RISA and AFDRA.	Yan B, Wang P, Liao W, Ye Q, Xu M, Zhou J.	Water Sci Technol	10.2166/wst.2012.534	2013
	Bacterial filamentation as a mechanism for cell-to-cell spread within an animal host.	Tran TD, Ali MA, Lee D, Felix MA, Luallen RJ.	Nat Commun	10.1038/s41467-022-28297-6	2022
	A study on the oral and cloacal bacterial flora of Mugger crocodiles (Crocodylus palustris) in the Negour protected area, Iran.	Gholamhosseini A, Sharifiyazdi H, Rakhshaninejad M, Soltanian S, Salighehzadeh R, Kordestani H.	Vet Res Forum	10.30466/vrf.2019.108417.2571	2021
Pathogenicity	The genome of a steinernematid-associated Pseudomonas piscis bacterium encodes the biosynthesis of insect toxins.	Awori RM, Hendre P, Amugune NO.	Access Microbiol	10.1099/acmi.0.000659.v3	2023
Metabolism	Selenite Reduction and the Biogenesis of Selenium Nanoparticles by Alcaligenesfaecalis Se03 Isolated from the Gut of Monochamus alternatus (Coleoptera: Cerambycidae).	Wang Y, Shu X, Zhou Q, Fan T, Wang T, Chen X, Li M, Ma Y, Ni J, Hou J, Zhao W, Li R, Huang S, Wu L.	Int J Mol Sci	10.3390/ijms19092799	2018
Enzymology	Immobilization of Alcaligenes faecalis penicillin G acylase on epoxy-type supports.	Sun J, Zhou Y, Yuan Z, Xu G.	Prikl Biokhim Mikrobiol	10.1134/s0003683809050032	2009
	Terahertz thermal curve analysis for label-free identification of pathogens.	Jun SW, Ahn YH.	Nat Commun	10.1038/s41467-022-31137-2	2022
Enzymology	Emergence of unusual nonfermenting Gram-negative nosocomial pathogens in a Saudi hospital.	Asaad AM, Al-Ayed MS, Qureshi MA.	Jpn J Infect Dis	10.7883/yoken.66.507	2013
	Unveiling anticancer, antimicrobial, and antioxidant activities of novel synthesized bimetallic boron oxide-zinc oxide nanoparticles.	Hashem AH, Rizk SH, Abdel-Maksoud MA, Al-Qahtani WH, AbdElgawad H, El-Sayyad GS.	RSC Adv	10.1039/d3ra03413e	2023
Enzymology	Cold-adapted arsenite oxidase from a psychrotolerant Polaromonas species.	Osborne TH, Heath MD, Martin AC, Pankowski JA, Hudson-Edwards KA, Santini JM.	Metallomics	10.1039/c2mt20180a	2013
Phylogeny	Role of the moth fly Clogmia albipunctata (Diptera: Psychodinae) as a mechanical vector of bacterial pathogens in German hospitals.	Faulde M, Spiesberger M.	J Hosp Infect	10.1016/j.jhin.2012.09.019	2013
	Cutinase-Catalyzed Polyester-Polyurethane Degradation: Elucidation of the Hydrolysis Mechanism.	Di Bisceglie F, Quartinello F, Vielnascher R, Guebitz GM, Pellis A.	Polymers (Basel)	10.3390/polym14030411	2022
Genetics	Metagenomic Analysis Reveals Bacterial and Fungal Diversity and Their Bioremediation Potential From Sediments of River Ganga and Yamuna in India.	Behera BK, Chakraborty HJ, Patra B, Rout AK, Dehury B, Das BK, Sarkar DJ, Parida PK, Raman RK, Rao AR, Rai A, Mohapatra T.	Front Microbiol	10.3389/fmicb.2020.556136	2020
Metabolism	Co-Occurrence of Regulated and Emerging Mycotoxins in Corn Silage: Relationships with Fermentation Quality and Bacterial Communities.	Gallo A, Ghilardelli F, Atzori AS, Zara S, Novak B, Faas J, Fancello F.	Toxins (Basel)	10.3390/toxins13030232	2021
	Carbon fiber as an excellent support material for wastewater treatment biofilms.	Matsumoto S, Ohtaki A, Hori K.	Environ Sci Technol	10.1021/es3020502	2012
	Process Development for 6-Aminopenicillanic Acid Production Using Lentikats-Encapsulated Escherichia coli Cells Expressing Penicillin V Acylase.	Sawant AM, Sunder AV, Vamkudoth KR, Ramasamy S, Pundle A.	ACS Omega	10.1021/acsomega.0c02813	2020
Metabolism	Fusion of binding domains to Thermobifida cellulosilytica cutinase to tune sorption characteristics and enhancing PET hydrolysis.	Ribitsch D, Yebra AO, Zitzenbacher S, Wu J, Nowitsch S, Steinkellner G, Greimel K, Doliska A, Oberdorfer G, Gruber CC, Gruber K, Schwab H, Stana-Kleinschek K, Acero EH, Guebitz GM.	Biomacromolecules	10.1021/bm400140u	2013
	Eco-friendly synthesized nanoparticles as antimicrobial agents: an updated review.	Borehalli Mayegowda S, Roy A, N G M, Pandit S, Alghamdi S, Almehmadi M, Allahyani M, Awwad NS, Sharma R.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1224778	2023
	Stingless Bee Honey: Evaluating Its Antibacterial Activity and Bacterial Diversity.	Rosli FN, Hazemi MHF, Akbar MA, Basir S, Kassim H, Bunawan H.	Insects	10.3390/insects11080500	2020
Enzymology	Potential pathogenic bacteria in metalworking fluids and aerosols from a machining facility.	Perkins SD, Angenent LT.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2010.00976.x	2010
	Green synthesis of MgO nanoparticles and its antibacterial properties.	Rotti RB, Sunitha DV, Manjunath R, Roy A, Mayegowda SB, Gnanaprakash AP, Alghamdi S, Almehmadi M, Abdulaziz O, Allahyani M, Aljuaid A, Alsaiari AA, Ashgar SS, Babalghith AO, Abd El-Lateef AE, Khidir EB.	Front Chem	10.3389/fchem.2023.1143614	2023
Pathogenicity	Isoenzyme N-Acyl-l-Amino Acid Amidohydrolase NA Increases Ochratoxin A Degradation Efficacy of Stenotrophomonas sp. CW117 by Enhancing Amidohydrolase ADH3 Stability.	Chen N, Fei Q, Luo H, Fang Z, Xiao Y, Du Z, Zhou Y.	Microbiol Spectr	10.1128/spectrum.02205-22	2022
	Antimicrobial activity of supernatants produced by bacteria isolated from Brazilian stingless bee's larval food.	Santos ACC, Malta SM, Dantas RCC, Coelho Rocha ND, Ariston de Carvalho Azevedo V, Ueira-Vieira C.	BMC Microbiol	10.1186/s12866-022-02548-4	2022
Phylogeny	Bacteria from Ips sexdentatus (Coleoptera: Curculionidae) and their biocontrol potential.	Sevim A, Gokce C, Erbas Z, Ozkan F.	J Basic Microbiol	10.1002/jobm.201100564	2012
	Advances in the Structures, Pharmacological Activities, and Biosynthesis of Plant Diterpenoids.	Li L, Fu J, Liu N.	J Microbiol Biotechnol	10.4014/jmb.2402.02014	2024
	Nonspecific Bacterial Flora Isolated from the Body Surface and Inside Ixodes ricinus Ticks.	Okla H, Sosnowska M, Jasik KP, Slodki J, Wojtyczka RD.	Pol J Microbiol	10.33073/pjm-2012-026	2012
	The Respiratory Commensal Bacterium Corynebacterium pseudodiphtheriticum as a Mucosal Adjuvant for Nasal Vaccines.	Ortiz Moyano R, Raya Tonetti F, Fukuyama K, Elean M, Tomokiyo M, Suda Y, Melnikov V, Kitazawa H, Villena J.	Vaccines (Basel)	10.3390/vaccines11030611	2023
	Aerobic denitrification as an N2O source from microbial communities.	Roothans N, Gabriels M, Abeel T, Pabst M, van Loosdrecht MCM, Laureni M.	ISME J	10.1093/ismejo/wrae116	2024
	A case of sepsis due to a rare carbapenem-resistant Ignatzschineria species.	Maniam K, Argentine S.	IDCases	10.1016/j.idcr.2021.e01354	2022
Metabolism	The importance of rhamnolipid-biosurfactant-induced changes in bacterial membrane lipids of Bacillus subtilis for the antimicrobial activity of thiosulfonates.	Sotirova A, Avramova T, Stoitsova S, Lazarkevich I, Lubenets V, Karpenko E, Galabova D.	Curr Microbiol	10.1007/s00284-012-0191-7	2012
Phylogeny	Effect of Rearing Temperature on Growth and Microbiota Composition of Hermetia illucens.	Raimondi S, Spampinato G, Macavei LI, Lugli L, Candeliere F, Rossi M, Maistrello L, Amaretti A.	Microorganisms	10.3390/microorganisms8060902	2020
	rRNA Analysis Based on Long-Read High-Throughput Sequencing Reveals a More Accurate Diagnostic for the Bacterial Infection of Ascites.	Yu X, Jiang W, Huang X, Lin J, Ye H, Liu B.	Biomed Res Int	10.1155/2021/6287280	2021
	Therapeutic Potential of Natural Plants Against Non-Alcoholic Fatty Liver Disease: Targeting the Interplay Between Gut Microbiota and Bile Acids.	Sun Q, Xin X, An Z, Hu Y, Feng Q.	Front Cell Infect Microbiol	10.3389/fcimb.2022.854879	2022
Pathogenicity	[Evaluation of occurrence of Alcaligenes faecalis in clinical samples of patients of the university hospital in Bydgoszcz].	Jachna-Sawicka K, Gospodarek E.	Med Dosw Mikrobiol		2009
Phylogeny	Draft genome sequence of Achromobacter piechaudii strain HLE.	Trimble WL, Phung le T, Meyer F, Silver S, Gilbert JA.	J Bacteriol	10.1128/jb.01660-12	2012
Pathogenicity	Using phenotype microarrays in the assessment of the antibiotic susceptibility profile of bacteria isolated from wastewater in on-site treatment facilities.	Jalowiecki L, Chojniak J, Dorgeloh E, Hegedusova B, Ejhed H, Magner J, Plaza G.	Folia Microbiol (Praha)	10.1007/s12223-017-0516-9	2017
Enzymology	Unusual causes of peritonitis in a peritoneal dialysis patient: Alcaligenes faecalis and Pantoea agglomerans.	Kahveci A, Asicioglu E, Tigen E, Ari E, Arikan H, Odabasi Z, Ozener C.	Ann Clin Microbiol Antimicrob	10.1186/1476-0711-10-12	2011
	Biodegradation of pyridine raffinate by two bacterial co-cultures of Bacillus cereus (DQ435020) and Alcaligenes faecalis (DQ435021)	Ram Chandra., Yadav S, Bharagava RN.	World J Microbiol Biotechnol	10.1007/s11274-009-0223-z	2010
Enzymology	Transcriptional delineation of polysaccharide utilization loci in the human gut commensal Segatella copri DSM18205 and co-culture with exemplar Bacteroides species on dietary plant glycans.	Panwar D, Briggs J, Fraser ASC, Stewart WA, Brumer H.	Appl Environ Microbiol	10.1128/aem.01759-24	2025
	Strawberry Protease as a Laundry Detergent Additive Candidate: Immobilization, Compatibility Study with Detergent Ingredients, and Washing Performance Test.	Alici EH, Arabaci G.	Glob Chall	10.1002/gch2.202300102	2024
	Evaluation of the Antimicrobial Capacity of Bacteria Isolated from Stingless Bee (Scaptotrigona aff. postica) Honey Cultivated in Açai (Euterpe oleracea) Monoculture.	Silva ICD, Conceicao EOA, Pereira DS, Rogez H, Muto NA.	Antibiotics (Basel)	10.3390/antibiotics12020223	2023
	Lymphoid Tissue-Resident Alcaligenes Establish an Intracellular Symbiotic Environment by Creating a Unique Energy Shift in Dendritic Cells.	Hosomi K, Shibata N, Shimoyama A, Uto T, Nagatake T, Tojima Y, Nishino T, Takeyama H, Fukase K, Kiyono H, Kunisawa J.	Front Microbiol	10.3389/fmicb.2020.561005	2020
Pathogenicity	Microbiological Decontamination of Mycotoxins: Opportunities and Limitations.	Piotrowska M.	Toxins (Basel)	10.3390/toxins13110819	2021
	Evaluation of the antibacterial and antioxidant activities of chitosan edible films incorporated with organic essential oils obtained from four Thymus species.	Ballester-Costa C, Sendra E, Fernandez-Lopez J, Viuda-Martos M.	J Food Sci Technol	10.1007/s13197-016-2312-y	2016
	Novel approach based on GQD-PHB as anchoring platform for the development of SARS-CoV-2 electrochemical immunosensor.	Martins G, Gogola JL, Budni LH, Papi MA, Bom MAT, Budel MLT, de Souza EM, Muller-Santos M, Beirao BCB, Banks CE, Marcolino-Junior LH, Bergamini MF.	Anal Chim Acta	10.1016/j.aca.2022.340442	2022
	Optimization of laccase from Stenotrophomonas maltophilia E1 by submerge fermentation using coconut husk with its detoxification and biodecolorization ability of synthetic dyes.	Albulaihed Y, Adnan M, Jamal A, Snoussi M, Patel K, Patel M.	Bioresour Bioprocess	10.1186/s40643-023-00703-x	2023
Metabolism	Enantioselective biocatalytic hydrolysis of (R,S)-mandelonitrile for production of (R)-(-)-mandelic acid by a newly isolated mutant strain.	Xue YP, Xu SZ, Liu ZQ, Zheng YG, Shen YC.	J Ind Microbiol Biotechnol	10.1007/s10295-010-0778-6	2011
Metabolism	Cotinine Hydroxylase CotA Initiates Biodegradation of Wastewater Micropollutant Cotinine in Nocardioides sp. Strain JQ2195.	Zhao L, Zhao Z, Zhang K, Zhang X, Xu S, Liu J, Liu B, Hong Q, Qiu J, He J.	Appl Environ Microbiol	10.1128/aem.00923-21	2021
Enzymology	Bacillus subtilis ANSB168 Producing d-alanyl-d-alanine Carboxypeptidase Could Alleviate the Immune Injury and Inflammation Induced by Ochratoxin A.	Qing H, Huo X, Huang S, Zhao L, Zhang J, Ji C, Ma Q.	Int J Mol Sci	10.3390/ijms222112059	2021
	Impact of Gut Microbiota and Microbiota-Related Metabolites on Hyperlipidemia.	Jia X, Xu W, Zhang L, Li X, Wang R, Wu S.	Front Cell Infect Microbiol	10.3389/fcimb.2021.634780	2021
Genetics	Background Filtering of Clinical Metagenomic Sequencing with a Library Concentration-Normalized Model.	Du J, Zhang J, Zhang D, Zhou Y, Wu P, Ding W, Wang J, Ouyang C, Yang Q.	Microbiol Spectr	10.1128/spectrum.01779-22	2022
	Chronic laminitis is associated with potential bacterial pathogens in the laminae.	Onishi JC, Park JW, Haggblom MM, Fennell MJ, Fugaro MN.	Vet Microbiol	10.1016/j.vetmic.2012.02.024	2012
Pathogenicity	Biodegradation of ochratoxin A by endophytic Trichoderma koningii strains.	Ismaiel AA, Mohamed HH, El-Sayed MT.	World J Microbiol Biotechnol	10.1007/s11274-022-03491-2	2022
	Interactions among microorganisms functionally active for electron transfer and pollutant degradation in natural environments.	Zhou Q, Li R, Li T, Zhou R, Hou Z, Zhang X.	Eco Environ Health	10.1016/j.eehl.2023.01.002	2023
Pathogenicity	Method to detect only viable cells in microbial ecology.	Luo JF, Lin WT, Guo Y.	Appl Microbiol Biotechnol	10.1007/s00253-009-2373-1	2010
	Alterations of Gut Microbiome and Serum Metabolome in Coronary Artery Disease Patients Complicated With Non-alcoholic Fatty Liver Disease Are Associated With Adverse Cardiovascular Outcomes.	Hu X, Zhou R, Li H, Zhao X, Sun Y, Fan Y, Zhang S.	Front Cardiovasc Med	10.3389/fcvm.2021.805812	2021
	Risk factors and microbial profile of central venous catheter related blood stream infection in medical cardiac care units, National Heart Institute, Egypt.	Khalil GM, Azqul MM.	Egypt Heart J	10.1016/j.ehj.2018.07.001	2018
	Herbal therapy for ameliorating nonalcoholic fatty liver disease via rebuilding the intestinal microecology.	Yang XF, Lu M, You L, Gen H, Yuan L, Tian T, Li CY, Xu K, Hou J, Lei M.	Chin Med	10.1186/s13020-021-00470-x	2021
Phylogeny	Isolation of Kerstersia gyiorum from a patient with cholesteatomatous chronic otitis media.	Almuzara MN, Barberis CM, Traglia GM, Ordonez AM, Famiglietti AM, Ramirez MS, Vay CA.	J Clin Microbiol	10.1128/jcm.02051-12	2012
Metabolism	Production of bioemulsifier by Bacillus subtilis, Alcaligenes faecalis and Enterobacter species in liquid culture.	Toledo FL, Gonzalez-Lopez J, Calvo C.	Bioresour Technol	10.1016/j.biortech.2007.08.055	2008
	Elicitation of Bacillus cereus-Amazcala (B.c-A) with SiO₂ Nanoparticles Improves Its Role as a Plant Growth-Promoting Bacteria (PGPB) in Chili Pepper Plants.	Ferrusquia-Jimenez NI, Gonzalez-Arias B, Rosales A, Esquivel K, Escamilla-Silva EM, Ortega-Torres AE, Guevara-Gonzalez RG.	Plants (Basel)	10.3390/plants11243445	2022
Pathogenicity	Antibacterial Activity of Biosynthesized Selenium Nanoparticles Using Extracts of Calendula officinalis against Potentially Clinical Bacterial Strains.	Hernandez-Diaz JA, Garza-Garcia JJ, Leon-Morales JM, Zamudio-Ojeda A, Arratia-Quijada J, Velazquez-Juarez G, Lopez-Velazquez JC, Garcia-Morales S.	Molecules	10.3390/molecules26195929	2021
	Current Knowledge on Polyethylene Terephthalate Degradation by Genetically Modified Microorganisms.	Urbanek AK, Kosiorowska KE, Mironczuk AM.	Front Bioeng Biotechnol	10.3389/fbioe.2021.771133	2021
	The Rise of Radicals in Bioinorganic Chemistry.	Gray HB, Winkler JR.	Isr J Chem	10.1002/ijch.201600069	2016
	Bacterial Resistance to beta-Lactam Antibiotics in Municipal Wastewater: Insights from a Full-Scale Treatment Plant in Poland.	Jendrzejewska N, Karwowska E.	Microorganisms	10.3390/microorganisms10122323	2022
	Molecular cloning, genetic organization of gene cluster encoding phenol hydroxylase and catechol 2,3-dioxygenase in Alcaligenes faecalis IS-46	Zhu C, Zhang L, Zhao L.	World J Microbiol Biotechnol	10.1007/s11274-008-9660-3	2008
Metabolism	Phylogenetic relationship of phosphate solubilizing bacteria according to 16S rRNA genes.	Javadi Nobandegani MB, Saud HM, Yun WM.	Biomed Res Int	10.1155/2015/201379	2015
Genetics	Distribution Patterns of Antibiotic Resistance Genes and Their Bacterial Hosts in a Manure Lagoon of a Large-Scale Swine Finishing Facility.	Begmatov S, Beletsky AV, Gruzdev EV, Mardanov AV, Glukhova LB, Karnachuk OV, Ravin NV.	Microorganisms	10.3390/microorganisms10112301	2022
Enzymology	Cutinolytic esterase activity of bacteria isolated from mixed-plant compost and characterization of a cutinase gene from Pseudomonas pseudoalcaligenes.	Inglis GD, Yanke LJ, Selinger LB.	Can J Microbiol	10.1139/w11-083	2011
Transcriptome	Respiratory immune status and microbiome in recovered COVID-19 patients revealed by metatranscriptomic analyses.	Meng H, Wang S, Tang X, Guo J, Xu X, Wang D, Jin F, Zheng M, Yin S, He C, Han Y, Chen J, Han J, Ren C, Gao Y, Liu H, Wang Y, Jin R.	Front Cell Infect Microbiol	10.3389/fcimb.2022.1011672	2022
	Biodegradation and Metabolic Pathway of the Neonicotinoid Insecticide Thiamethoxam by Labrys portucalensis F11.	Boufercha O, Monforte AR, Boudemagh A, Ferreira AC, Castro PML, Moreira IS.	Int J Mol Sci	10.3390/ijms232214326	2022
Metabolism	Effects of entrapment on nucleic acid content, cell morphology, cell surface property, and stress of pure cultures commonly found in biological wastewater treatment.	Pramanik S, Khanna R, Katti K, McEvoy J, Khan E.	Appl Microbiol Biotechnol	10.1007/s00253-011-3393-1	2011
Enzymology	Molecular Identification of Bacteria Isolated from Marketed Sparus aurata and Penaeus indicus Sea Products: Antibiotic Resistance Profiling and Evaluation of Biofilm Formation.	Abdulhakeem MA, Alreshidi M, Bardakci F, Hamadou WS, De Feo V, Noumi E, Snoussi M.	Life (Basel)	10.3390/life13020548	2023
Metabolism	[Enhanced production of curdlan by Alcaligenes faecalis by selective feeding with ammonia water during the cell growth phase of fermentation].	Wu J, Zhan X, Liu H, Zheng Z.	Sheng Wu Gong Cheng Xue Bao	10.1016/s1872-2075(08)60049-7	2008
Phylogeny	Chrysomya megacephala larvae feeding favourably influences manure microbiome, heavy metal stability and greenhouse gas emissions.	Wang X, Wang W, Gao Q, Wang X, Lei C, Zhu F.	Microb Biotechnol	10.1111/1751-7915.13253	2018
Metabolism	Microbial purification of postfermentation medium after 1,3-PD production from raw glycerol.	Szymanowska-Powalowska D, Piatkowska J, Leja K.	Biomed Res Int	10.1155/2013/949107	2013
	Characterization, modeling, and anticancer activity of L.arginase production from marine Bacillus licheniformis OF2.	Selim MS, Mounier MM, Abdelhamid SA, Hamed AA, Abo Elsoud MM, Mohamed SS.	BMC Biotechnol	10.1186/s12896-024-00829-6	2024
Enzymology	In vitro antimicrobial activity of "last-resort" antibiotics against unusual nonfermenting Gram-negative bacilli clinical isolates.	Jacquier H, Le Monnier A, Carbonnelle E, Corvec S, Illiaquer M, Bille E, Zahar JR, Jaureguy F, Fihman V, Tankovic J, Cattoir V, Gmc Study Group.	Microb Drug Resist	10.1089/mdr.2011.0195	2012
Transcriptome	Identification and Surveys of Promoting Plant Growth VOCs from Biocontrol Bacteria Paenibacillus peoriae GXUN15128.	Wang K, Lin Z, Dou J, Jiang M, Shen N, Feng J.	Microbiol Spectr	10.1128/spectrum.04346-22	2023
	Bacterial Associations Across House Fly Life History: Evidence for Transstadial Carriage From Managed Manure.	Zurek K, Nayduch D.	J Insect Sci	10.1093/jisesa/iev156	2016
	Fucoidan Improves Growth, Digestive Tract Maturation, and Gut Microbiota in Large Yellow Croaker (Larimichthys crocea) Larvae.	Yin Z, Gong Y, Liu Y, He Y, Yao C, Huang W, Mai K, Ai Q.	Nutrients	10.3390/nu14214504	2022
	Visualization and direct counting of individual denitrifying bacterial cells in soil by nirK-targeted direct in situ PCR.	Ryuda N, Hashimoto T, Ueno D, Inoue K, Someya T.	Microbes Environ	10.1264/jsme2.me10180	2011
	The Antimicrobial Activity of Curcumin and Xanthohumol on Bacterial Biofilms Developed over Dental Implant Surfaces.	Alonso-Espanol A, Bravo E, Ribeiro-Vidal H, Virto L, Herrera D, Alonso B, Sanz M.	Int J Mol Sci	10.3390/ijms24032335	2023
Metabolism	[Denitrifying bacteria isolated from river sediment and its nitrogen and phosphorus removal capacity from river water].	Wang L, Li J, Kang WL, Chen YZ, Guo TZ.	Huan Jing Ke Xue		2009
	Comparisons of Physicochemical Properties, Bacterial Diversities, Isoflavone Profiles and Antioxidant Activities on Household and Commercial doenjang.	Lee HY, Cho DY, Jung JG, Kim MJ, Jeong JB, Lee JH, Lee GY, Jang MY, Lee JH, Haque MA, Cho KM.	Molecules	10.3390/molecules28083516	2023
	Identification of a new Alcaligenes faecalis strain MOR02 and assessment of its toxicity and pathogenicity to insects.	Quiroz-Castaneda RE, Mendoza-Mejia A, Obregon-Barboza V, Martinez-Ocampo F, Hernandez-Mendoza A, Martinez-Garduno F, Guillen-Solis G, Sanchez-Rodriguez F, Pena-Chora G, Ortiz-Hernandez L, Gaytan-Colin P, Dantan-Gonzalez E.	Biomed Res Int	10.1155/2015/570243	2015
	Effects of associated bacteria on the pathogenicity and reproduction of the insect-parasitic nematode Rhabditis blumi (Nematoda: Rhabditida).	Park HW, Kim YO, Ha JS, Youn SH, Kim HH, Bilgrami AL, Shin CS.	Can J Microbiol	10.1139/w11-067	2011
Enzymology	Production and Characterization of a Bioflocculant from Pichia kudriavzevii MH545928.1 and Its Application in Wastewater Treatment.	Tsilo PH, Basson AK, Ntombela ZG, Maliehe TS, Pullabhotla VSRR.	Int J Environ Res Public Health	10.3390/ijerph19063148	2022
Metabolism	Protein improvement in Gari by the use of pure cultures of microorganisms involved in the natural fermentation process.	Ahaotu I, Ogueke CC, Owuamanam CI, Ahaotu NN, Nwosu JN.	Pak J Biol Sci	10.3923/pjbs.2011.933.938	2011
Metabolism	Fed batch bioconversion of 2-propanol by a solvent tolerant strain of Alcaligenes faecalis entrapped in Ca-alginate gel.	Mohammad BT, Bustard MT.	J Ind Microbiol Biotechnol	10.1007/s10295-008-0325-x	2008
	Antifungal Activity and Alleviation of Salt Stress by Volatile Organic Compounds of Native Pseudomonas Obtained from Mentha piperita.	Gil SS, Cappellari LDR, Giordano W, Banchio E.	Plants (Basel)	10.3390/plants12071488	2023
	Zinc-substituted pseudoazurin solved by S/Zn-SAD phasing.	Gessmann R, Papadovasilaki M, Drougkas E, Petratos K.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x14025552	2015
Genetics	Comparison of microbial diversity and metabolites on household and commercial doenjang	Yul Lee H, Haque M, Yong Cho D, Bin Jeong J, Ho Lee J, Young Lee G, Yeun Jang M, Hwan Lee J, Man Cho K.	Food Chem X		2023
	Cell-based biosensor for measurement of phenol and nitrophenols toxicity.	Liu C, Yong D, Yu D, Dong S.	Talanta	10.1016/j.talanta.2011.02.006	2011
Pathogenicity	Bacterial community composition characterization of a lead-contaminated Microcoleus sp. consortium.	Giloteaux L, Sole A, Esteve I, Duran R.	Environ Sci Pollut Res Int	10.1007/s11356-010-0432-x	2011
Metabolism	Indigenous soil bacteria with the combined potential for hydrocarbon consumption and heavy metal resistance.	Ali N, Dashti N, Al-Mailem D, Eliyas M, Radwan S.	Environ Sci Pollut Res Int	10.1007/s11356-011-0624-z	2012
	Effect of Metarhizium anisopliae (MetA1) on growth enhancement and antioxidative defense mechanism against Rhizoctonia root rot in okra.	Mimma AA, Akter T, Haque MA, Bhuiyan MAB, Chowdhury MZH, Sultana S, Islam SMN.	Heliyon	10.1016/j.heliyon.2023.e18978	2023
	Structure, function and substrate preferences of archaeal S-adenosyl-L-homocysteine hydrolases.	Koeppl LH, Popadic D, Saleem-Batcha R, Germer P, Andexer JN.	Commun Biol	10.1038/s42003-024-06078-9	2024
Pathogenicity	beta-Glucan-Induced Immuno-Modulation: A Role for the Intestinal Microbiota and Short-Chain Fatty Acids in Common Carp.	Petit J, de Bruijn I, Goldman MRG, van den Brink E, Pellikaan WF, Forlenza M, Wiegertjes GF.	Front Immunol	10.3389/fimmu.2021.761820	2021
	Development of an in vitro biofilm model for the study of the impact of fluoroquinolones on sewer biofilm microbiota.	Naudin SA, Ferran AA, Imazaki PH, Arpaillange N, Marcuzzo C, Vienne M, Demmou S, Bousquet-Melou A, Ramon-Portugal F, Lacroix MZ, Hoede C, Barret M, Dupouy V, Bibbal D.	Front Microbiol	10.3389/fmicb.2024.1377047	2024
	A Comparative Study of Skimmed Milk and Cassava Flour on the Viability of Freeze-Dried Lactic Acid Bacteria as Starter Cultures for Yogurt Fermentation.	Ibrahim I, Ayariga JA, Xu J, Boakai RK, Ajayi OS, Owusu-Kwarteng J.	Foods	10.3390/foods12061207	2023
Pathogenicity	Urinary Tract Infections among Indonesian Pregnant Women and Its Susceptibility Pattern.	Rosana Y, Ocviyanti D, Halim M, Harlinda FY, Amran R, Akbar W, Billy M, Akhmad SRP.	Infect Dis Obstet Gynecol	10.1155/2020/9681632	2020
Pathogenicity	Aspergillus fumigatus effector crpA orchestrates host prostaglandin signaling to promote fungal virulence.	Pinzan CF, Diehl C, de Castro PA, Delbaje E, Rocha P, Marciano CL, da Rosa-Garzon NG, Cabral H, Sprute R, Kolovou A, Vilela AFL, Sorgi CA, Ecoutin A, Berbon M, Loquet A, Freitas-Filho EG, Cunha LD, Thrikawala SU, Rosowski EE, Dos Reis TF, Goldman GH.	mBio	10.1128/mbio.02481-25	2025
	A 10-year single-center experience on Stenotrophomonas maltophilia resistotyping in Szeged, Hungary.	Gajdacs M, Urban E.	Eur J Microbiol Immunol (Bp)	10.1556/1886.2020.00006	2020
Biotechnology	Prevalence and Traits of Mobile Colistin Resistance Gene Harbouring Isolates from Different Ecosystems in Africa.	Anyanwu MU, Okpala COR, Chah KF, Shoyinka VS.	Biomed Res Int	10.1155/2021/6630379	2021
	Bacteremia Caused by Kerstersia gyiorum.	Bostwick AD, Zhang C, Manninen K, Touchberry J, Greene SR, Holland TL.	J Clin Microbiol	10.1128/jcm.03625-14	2015
	Metabolome-driven microbiome assembly determining the health of ginger crop (Zingiber officinale L. Roscoe) against rhizome rot.	Wang W, Portal-Gonzalez N, Wang X, Li J, Li H, Portieles R, Borras-Hidalgo O, He W, Santos-Bermudez R.	Microbiome	10.1186/s40168-024-01885-y	2024
	Contribution of Stenotrophomonas maltophilia MfsC transporter to protection against diamide and the regulation of its expression by the diamide responsive repressor DitR.	Boonyakanog A, Charoenlap N, Chattrakarn S, Vattanaviboon P, Mongkolsuk S.	PLoS One	10.1371/journal.pone.0272388	2022
Pathogenicity	Investigation of the relationship between inflammation and microbiota in the intestinal tissue of female and male rats fed with fructose: Modulatory role of metformin.	Yalcin Bugdayci A, Akarca Dizakar SO, Demirel MA, Omeroglu S, Akar F, Uludag MO.	Daru	10.1007/s40199-024-00521-2	2024
Metabolism	Selection and characteristics of a switchgrass-colonizing microbial community to produce extracellular cellulases and xylanases.	Yang H, Wu H, Wang X, Cui Z, Li Y.	Bioresour Technol	10.1016/j.biortech.2010.09.009	2011
Metabolism	3-Hydroxypyridine Dehydrogenase HpdA Is Encoded by a Novel Four-Component Gene Cluster and Catalyzes the First Step of 3-Hydroxypyridine Catabolism in Ensifer adhaerens HP1.	Wang H, Wang X, Ren H, Wang X, Lu Z.	Appl Environ Microbiol	10.1128/aem.01313-20	2020
Metabolism	Beyond oil degradation: enzymatic potential of Alcanivorax to degrade natural and synthetic polyesters.	Zadjelovic V, Chhun A, Quareshy M, Silvano E, Hernandez-Fernaud JR, Aguilo-Ferretjans MM, Bosch R, Dorador C, Gibson MI, Christie-Oleza JA.	Environ Microbiol	10.1111/1462-2920.14947	2020
	The structures of Alcaligenes faecalis D-3-hydroxybutyrate dehydrogenase before and after NAD+ and acetate binding suggest a dynamical reaction mechanism as a member of the SDR family.	Hoque MM, Shimizu S, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Tsunoda M, Amano H, Sekiguchi T, Takenaka A.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444908004009	2008
Genetics	Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders.	Manghi P, Filosi M, Zolfo M, Casten LG, Garcia-Valiente A, Mattevi S, Heidrich V, Golzato D, Perini S, Thomas AM, Montalbano S, Cancellieri S, Waldron L, Hall JB, Xu S, Volfovsky N, Green Snyder L, Feliciano P, Asnicar F, Valles-Colomer M, Michaelson JJ, Segata N, Domenici E.	Nat Commun	10.1038/s41467-024-53934-7	2024
	Rhizosphere microorganisms of Crocus sativus as antagonists against pathogenic Fusarium oxysporum.	Zhang J, Lu J, Zhu Y, Huang Q, Qin L, Zhu B.	Front Plant Sci	10.3389/fpls.2022.1045147	2022
	Production and characterization of bioemulsifier by Parapedobacter indicus.	Devale A, Sawant R, Pardesi K, Perveen K, Khanam MN, Shouche Y, Mujumdar S.	Front Microbiol	10.3389/fmicb.2023.1111135	2023
Metabolism	Biodegradation of phenol at high initial concentration by Alcaligenes faecalis.	Jiang Y, Wen J, Bai J, Jia X, Hu Z.	J Hazard Mater	10.1016/j.jhazmat.2007.05.031	2007
Genetics	Strain- and Species-Level Variation in the Microbiome of Diabetic Wounds Is Associated with Clinical Outcomes and Therapeutic Efficacy.	Kalan LR, Meisel JS, Loesche MA, Horwinski J, Soaita I, Chen X, Uberoi A, Uberoi A, Gardner SE, Grice EA.	Cell Host Microbe	10.1016/j.chom.2019.03.006	2019
Pathogenicity	Black Truffles Affect Quercus aliena Physiology and Root-Associated nirK- and nirS-Type Denitrifying Bacterial Communities in the Initial Stage of Inoculation.	Kang Z, Li X, Li Y, Ye L, Zhang B, Zhang X, Penttinen P, Gu Y.	Front Microbiol	10.3389/fmicb.2022.792568	2022
	Cellulolytic and Ethanologenic Evaluation of Heterotermes indicola's Gut-Associated Bacterial Isolates.	Azhar S, Aihetasham A, Chaudhary A, Hussain Z, Abdul Rehman R, Abbas G, Alharbi SA, Ansari MJ, Qamer S.	ACS Omega	10.1021/acsomega.3c10030	2024
Enzymology	Laminarinase from Flavobacterium sp. reveals the structural basis of thermostability and substrate specificity.	Qin HM, Miyakawa T, Inoue A, Nakamura A, Nishiyama R, Ojima T, Tanokura M.	Sci Rep	10.1038/s41598-017-11542-0	2017
Genetics	Genomic analysis and chitinase characterization of Vibrio harveyi WXL538: insight into its adaptation to the marine environment.	Ran L, Wang X, He X, Guo R, Wu Y, Zhang P, Zhang XH.	Front Microbiol	10.3389/fmicb.2023.1121720	2023
Phylogeny	First case report of infection caused by Cupriavidus gilardii in a non-immunocompromised Chinese patient.	Zhang Z, Deng W, Wang S, Xu L, Yan L, Liao P.	IDCases	10.1016/j.idcr.2017.10.009	2017
	Microbial ecology of sand fly breeding sites: aging and larval conditioning alter the bacterial community composition of rearing substrates.	Romo Bechara N, Wasserberg G, Raymann K.	Parasit Vectors	10.1186/s13071-022-05381-w	2022
	Protonation of type-1 Cu bound histidines: a quantum chemical study.	Su P, Li H.	Inorg Chem	10.1021/ic9012735	2010
	Complications of PORT-A-CATH® in patients with sickle cell disease.	Alkindi S, Matwani S, Al-Maawali A, Al-Maskari B, Pathare A.	J Infect Public Health	10.1016/j.jiph.2011.10.004	2012
	Isolation and characterization of potential aerobic bacteria capable for pyridine degradation in presence of picoline, phenol and formaldehyde as co-pollutants	Ram Chandra., Bharagava RN, Kapley A, Purohit HJ.	World J Microbiol Biotechnol	10.1007/s11274-009-0114-3	2009
Metabolism	Component identification of electron transport chains in curdlan-producing Agrobacterium sp. ATCC 31749 and its genome-specific prediction using comparative genome and phylogenetic trees analysis.	Zhang H, Setubal JC, Zhan X, Zheng Z, Yu L, Wu J, Chen D.	J Ind Microbiol Biotechnol	10.1007/s10295-010-0810-x	2011
	Comparative efficiency of silica gel, biochar, and plant growth promoting bacteria on Cr and Pb availability to Solanum melongena L. in contaminated soil irrigated with wastewater.	Rabiya UE, Ali M, Farooq MA, Siddiq Z, Alamri SA, Siddiqui MH, Khan WU.	Front Plant Sci	10.3389/fpls.2022.950362	2022
	Surface properties of bacteria from activated sludge in relation to bioflocculation.	Xie B, Gu J, Lu J.	J Environ Sci (China)	10.1016/s1001-0742(09)60329-6	2010
Enzymology	Purification and biochemical characterization of two laccase isoenzymes isolated from Trichoderma harzianum S7113 and its application for bisphenol A degradation.	Elsayed AM, Mahmoud M, Abdel Karim GSA, Abdelraof M, Othman AM.	Microb Cell Fact	10.1186/s12934-022-02011-z	2023
	Bacterial Interactions in the Context of Chronic Wound Biofilm: A Review.	Durand BARN, Pouget C, Magnan C, Molle V, Lavigne JP, Dunyach-Remy C.	Microorganisms	10.3390/microorganisms10081500	2022
	Alleviation of Salinity Stress in Peanut by Application of Endophytic Bacteria.	Pal KK, Dey R, Sherathia DN, Devidayal, Mangalassery S, Kumar A, Rupapara RB, Mandaliya M, Rawal P, Bhadania RA, Thomas M, Patel MB, Maida P, Nawade BD, Ahmad S, Dash P, Radhakrishnan T.	Front Microbiol	10.3389/fmicb.2021.650771	2021
	Modes of Action of Biocontrol Agents and Elicitors for sustainable Protection against Bacterial Canker of Tomato.	Benchlih S, Esmaeel Q, Aberkani K, Tahiri A, Belabess Z, Lahlali R, Barka EA.	Microorganisms	10.3390/microorganisms11030726	2023
Metabolism	Characterization of sucrose-glutamic acid Maillard products (SGMPs) degrading bacteria and their metabolites.	Chandra R, Bharagava RN, Rai V, Singh SK.	Bioresour Technol	10.1016/j.biortech.2009.07.029	2009
	Isolation and characterization of organophosphorus phosphatases from Bacillus thuringiensis MB497 capable of degrading Chlorpyrifos, Triazophos and Dimethoate.	Ambreen S, Yasmin A, Aziz S.	Heliyon	10.1016/j.heliyon.2020.e04221	2020
	GC Analysis, Anticancer, and Antibacterial Activities of Secondary Bioactive Compounds from Endosymbiotic Bacteria of Pomegranate Aphid and Its Predator and Protector.	Alsufyani T, Al-Otaibi N, Alotaibi NJ, M'sakni NH, Alghamdi EM.	Molecules	10.3390/molecules28104255	2023
	Highly Efficient Biotransformation and Production of Selenium Nanoparticles and Polysaccharides Using Potential Probiotic Bacillus subtilis T5	Duan Y, Li M, Zhang S, Wang Y, Deng J, Wang Q, Yi T, Dong X, Cheng S, He Y, Gao C, Wang Z.	Metabolites	10.3390/metabo12121204	2022
Enzymology	Medical Use of Polycatecholamines + Oxidoreductases-Modified Curdlan Hydrogels-Perspectives.	Michalicha A, Przekora A, Stefaniuk D, Jaszek M, Matuszewska A, Belcarz A.	Int J Mol Sci	10.3390/ijms231710084	2022
	Ignatzschineria indica bacteremia in a patient with a maggot-infested heel ulcer: a case report and literature review.	Deslandes V, Haney C, Bernard K, Desjardins M.	Access Microbiol	10.1099/acmi.0.000078	2020
Enzymology	Detection of New Delhi metallo-beta-lactamase (encoded by blaNDM-1) in Acinetobacter schindleri during routine surveillance.	McGann P, Milillo M, Clifford RJ, Snesrud E, Stevenson L, Backlund MG, Viscount HB, Quintero R, Kwak YI, Zapor MJ, Waterman PE, Lesho EP.	J Clin Microbiol	10.1128/jcm.00281-13	2013
Enzymology	Microbiological survey of commercial tattoo and permanent makeup inks available in the United States.	Nho SW, Kim SJ, Kweon O, Howard PC, Moon MS, Sadrieh NK, Cerniglia CE.	J Appl Microbiol	10.1111/jam.13713	2018
	A Study on Isolation and Molecular Identification of Bordetella avium from Iranian Commercial and Backyard Broiler Turkeys within 2016-2018.	Ehsan M, Hassanzadeh M, Barrin A, Bozorgmehri Fard MH, Askari Badouei M, Ghalyanchilangeroudi A, Temple L, Turkyilmaz S.	Arch Razi Inst	10.22092/ari.2019.124680.1285	2020
	Inhibition of Campylobacter jejuni Biofilm Formation by D-Amino Acids.	Elgamoudi BA, Taha T, Korolik V.	Antibiotics (Basel)	10.3390/antibiotics9110836	2020
Metabolism	Mutant AFM 2 of Alcaligenes faecalis for phenol biodegradation using He-Ne laser irradiation.	Jiang Y, Wen J, Caiyin Q, Lin L, Hu Z.	Chemosphere	10.1016/j.chemosphere.2006.04.011	2006
Metabolism	Dual activity of Serratia marcescens Pt-3 in phosphate-solubilizing and production of antifungal volatiles.	Gong A, Wang G, Sun Y, Song M, Dimuna C, Gao Z, Wang H, Yang P.	BMC Microbiol	10.1186/s12866-021-02434-5	2022
Enzymology	Immobilization of permeabilized whole cell penicillin G acylase from Alcaligenes faecalis using pore matrix crosslinked with glutaraldehyde.	Cheng S, Wei D, Song Q, Zhao X.	Biotechnol Lett	10.1007/s10529-006-9067-x	2006
	Occurrence of Multiple, Extensive and Pan Drug-Resistant Pseudomonas aeruginosa and Carbapenemase Production from Presumptive Isolates Stored in a Biobank at Ethiopian Public Health Institute.	Addis T, Araya S, Desta K.	Infect Drug Resist	10.2147/idr.s327652	2021
	Insect Gut Bacteria Promoting the Growth of Tomato Plants (Solanum lycopersicum L.).	Krawczyk K, Szabelska-Beresewicz A, Przemieniecki SW, Szymanczyk M, Obrepalska-Steplowska A.	Int J Mol Sci	10.3390/ijms232113548	2022
Metabolism	Novel Polyhydroxybutyrate-Degrading Activity of the Microbulbifer Genus as Confirmed by Microbulbifer sp. SOL03 from the Marine Environment.	Park SL, Cho JY, Kim SH, Lee HJ, Kim SH, Suh MJ, Ham S, Bhatia SK, Gurav R, Park SH, Park K, Kim YG, Yang YH.	J Microbiol Biotechnol	10.4014/jmb.2109.09005	2022
	Optimization and multiple in vitro activity potentials of carotenoids from marine Kocuria sp. RAM1.	Metwally RA, El-Sersy NA, El Sikaily A, Sabry SA, Ghozlan HA.	Sci Rep	10.1038/s41598-022-22897-4	2022
	Purification and characterization of chitinase from Alcaligenes faecalis AU02 by utilizing marine wastes and its antioxidant activity.	Annamalai N, Veeramuthu Rajeswari M, Vijayalakshmi S, Balasubramanian T.	Ann Microbiol	10.1007/s13213-011-0198-5	2011
	Oil-Contaminated Soil Remediation with Biodegradation by Autochthonous Microorganisms and Phytoremediation by Maize (Zea mays).	Wojtowicz K, Steliga T, Kapusta P, Brzeszcz J.	Molecules	10.3390/molecules28166104	2023
	Ameliorating Drought Effects in Wheat Using an Exclusive or Co-Applied Rhizobacteria and ZnO Nanoparticles.	Muhammad F, Raza MAS, Iqbal R, Zulfiqar F, Aslam MU, Yong JWH, Altaf MA, Altaf MA, Zulfiqar B, Amin J, Ibrahim MA.	Biology (Basel)	10.3390/biology11111564	2022
Metabolism	Purification of siderophores of Alcaligenes faecalis on Amberlite XAD.	Sayyed RZ, Chincholkar SB.	Bioresour Technol	10.1016/j.biortech.2005.04.045	2006
Metabolism	Effect of pH, temperature and substrate on N2O, NO and CO2 production by Alcaligenes faecalis p.	Kesik M, Blagodatsky S, Papen H, Butterbach-Bahl K.	J Appl Microbiol	10.1111/j.1365-2672.2006.02927.x	2006
	Assessment of microbiological quality of sachet-packaged drinking water in Western Nigeria and its public health significance.	Olaoye OA, Onilude AA.	Public Health	10.1016/j.puhe.2009.09.015	2009
	Effect of Photoreduction of Semiconducting Iron Mineral-Goethite on Microbial Community in the Marine Euphotic Zone.	Liu J, Ge X, Ding H, Yang S, Sun Y, Li Y, Ji X, Li Y, Lu A.	Front Microbiol	10.3389/fmicb.2022.846441	2022
Enzymology	Biodegradation, Decolorization, and Detoxification of Di-Azo Dye Direct Red 81 by Halotolerant, Alkali-Thermo-Tolerant Bacterial Mixed Cultures.	Kamal IM, Abdeltawab NF, Ragab YM, Farag MA, Ramadan MA.	Microorganisms	10.3390/microorganisms10050994	2022
	Machine learning and metagenomics reveal shared antimicrobial resistance profiles across multiple chicken farms and abattoirs in China.	Baker M, Zhang X, Maciel-Guerra A, Dong Y, Wang W, Hu Y, Renney D, Hu Y, Liu L, Li H, Tong Z, Zhang M, Geng Y, Zhao L, Hao Z, Senin N, Chen J, Peng Z, Li F, Dottorini T.	Nat Food	10.1038/s43016-023-00814-w	2023
Enzymology	Structure-based stabilization of an enzyme: the case of penicillin acylase from Alcaligenes faecalis.	Wang T, Zhu H, Ma X, Ma Y, Wei D.	Protein Pept Lett	10.2174/092986606775101571	2006
Phylogeny	Entomopathogenic nematode-associated microbiota: from monoxenic paradigm to pathobiome.	Ogier JC, Pages S, Frayssinet M, Gaudriault S.	Microbiome	10.1186/s40168-020-00800-5	2020
	Interaction of insecticidal proteins from Pseudomonas spp. and Bacillus thuringiensis for boll weevil management.	Barbosa Rodrigues JD, Moreira RO, de Souza JAM, Desiderio JA.	PLoS One	10.1371/journal.pone.0294654	2023
	Isolation of Microbulbifer sp. SOL66 with High Polyhydroxyalkanoate-Degrading Activity from the Marine Environment.	Park SL, Cho JY, Kim SH, Bhatia SK, Gurav R, Park SH, Park K, Yang YH.	Polymers (Basel)	10.3390/polym13234257	2021
	Bacterial contamination in drinking water: a case study in rural areas of northern Rajasthan, India.	Suthar S, Chhimpa V, Singh S.	Environ Monit Assess	10.1007/s10661-008-0611-0	2009
	The Odor Release Regularity of Livestock and Poultry Manure and the Screening of Deodorizing Strains.	Ma H, Li F, Niyitanga E, Chai X, Wang S, Liu Y.	Microorganisms	10.3390/microorganisms9122488	2021
Metabolism	Characteristics of ammonium removal by heterotrophic nitrification-aerobic denitrification by Alcaligenes faecalis No. 4.	Joo HS, Hirai M, Shoda M.	J Biosci Bioeng	10.1263/jbb.100.184	2005
Metabolism	Nitrification and denitrification in high-strength ammonium by Alcaligenes faecalis.	Joo HS, Hirai M, Shoda M.	Biotechnol Lett	10.1007/s10529-005-5634-9	2005
Metabolism	Molecular and kinetic characterization of mixed cultures degrading natural and synthetic estrogens.	Muller M, Patureau D, Godon JJ, Delgenes JP, Hernandez-Raquet G.	Appl Microbiol Biotechnol	10.1007/s00253-009-2160-z	2010
	Adjuvant Curdlan Contributes to Immunization against Cryptococcus gattii Infection in a Mouse Strain-Specific Manner.	Oliveira-Brito PKM, de Campos GY, Guimaraes JG, Serafim da Costa L, Silva de Moura E, Lazo-Chica JE, Roque-Barreira MC, da Silva TA.	Vaccines (Basel)	10.3390/vaccines10040620	2022
Enzymology	Characterization of a novel long-chain acyl-CoA thioesterase from Alcaligenes faecalis.	Shahi P, Kumar I, Sharma R, Sanger S, Jolly RS.	FEBS J	10.1111/j.1742-4658.2006.05244.x	2006
	Formation of amyloid fibrils via longitudinal growth of oligomers.	Shahi P, Sharma R, Sanger S, Kumar I, Jolly RS.	Biochemistry	10.1021/bi7001136	2007
Genetics	Genomic characterization of Kerstersia gyiorum SWMUKG01, an isolate from a patient with respiratory infection in China.	Li Y, Tang M, Wang G, Li C, Chen W, Luo Y, Zeng J, Hu X, Zhou Y, Gao Y, Zhang L.	PLoS One	10.1371/journal.pone.0214686	2019
	Accuracy of heparin-binding protein for the diagnosis of nosocomial meningitis and ventriculitis.	Kong Y, Ye Y, Ma J, Shi G.	Crit Care	10.1186/s13054-022-03929-x	2022
	Pistacia atlantica Desf. A review of its traditional uses, phytochemicals and pharmacology.	Mahjoub F, Akhavan Rezayat K, Yousefi M, Mohebbi M, Salari R.	J Med Life	10.25122/jml-2017-0055	2018
	Effects of rice blast biocontrol strain Pseudomonas alcaliphila Ej2 on the endophytic microbiome and proteome of rice under salt stress.	Zeng Q, Man X, Huang Z, Zhuang L, Yang H, Sha Y.	Front Microbiol	10.3389/fmicb.2023.1129614	2023
	Antimicrobial Susceptibility Trends among Pathogens Isolated from Blood: A 6-Year Retrospective Study from a Tertiary Care Hospital in East Sikkim, India.	Yangzom T, Tsering DC, Kar S, Kapil J.	J Lab Physicians	10.1055/s-0040-1712814	2020
	Pseudomonas alcaliphila NEWG-2 as biosorbent agent for methylene blue dye: optimization, equilibrium isotherms, and kinetic processes.	Ghoniem AA, Moussa Z, Alenzi AM, Alotaibi AS, Fakhry H, El-Khateeb AY, Saber WIA, Elsayed A.	Sci Rep	10.1038/s41598-023-30462-w	2023
Enzymology	Purification and characterization of arsenite oxidase from Arthrobacter sp.	Prasad KS, Subramanian V, Paul J.	Biometals	10.1007/s10534-009-9215-6	2009
Metabolism	Altering N₂O emissions by manipulating wheat root bacterial community.	Usyskin-Tonne A, Hadar Y, Minz D.	Sci Rep	10.1038/s41598-019-44124-3	2019
	Prevalence and Molecular Characterization of Metallo beta-Lactamase Producing Gram-Negative Pathogens Causing Eye Infections.	Rameshkumar G, Dhandapani R, Lalitha P, Rajapandian SGK, Palanivel V, Thangavelu S, Alyousef AA, Albalawi T, Alam P, Zubair M, Saleh FM, Alatawi FA, Husain FM.	Front Public Health	10.3389/fpubh.2022.870354	2022
	Hypochlorite digestion method for efficient recovery of PHB from Alcaligenes faecalis.	Sayyed RZ, Gangurde NS, Chincholkar SB.	Indian J Microbiol	10.1007/s12088-009-0036-7	2009
Metabolism	Atrazine degradation by stable mixed cultures enriched from agricultural soil and their characterization.	Siripattanakul S, Wirojanagud W, McEvoy J, Limpiyakorn T, Khan E.	J Appl Microbiol	10.1111/j.1365-2672.2008.04075.x	2009
Pathogenicity	Trends in antimicrobial susceptibility of gram-negative bacteria isolated from blood in Jakarta from 2002 to 2008.	Moehario LH, Tjoa E, Kiranasari A, Ningsih I, Rosana Y, Karuniawati A.	J Infect Dev Ctries	10.3855/jidc.85	2009
	Recognition of yeast beta-glucan particles triggers immunometabolic signaling required for trained immunity.	Horneck Johnston CJH, Ledwith AE, Lundahl MLE, Charles-Messance H, Hackett EE, O'Shaughnessy SD, Clegg J, Prendeville H, McGrath JP, Walsh AM, Case S, Austen Byrne H, Gautam P, Dempsey E, Corr SC, Sheedy FJ.	iScience	10.1016/j.isci.2024.109030	2024
Metabolism	Stable copper-nitrosyl formation by nitrite reductase in either oxidation state.	Tocheva EI, Rosell FI, Mauk AG, Murphy ME.	Biochemistry	10.1021/bi701205j	2007
Metabolism	Stereoselective nitrile hydrolysis by immobilized whole-cell biocatalyst.	Kaul P, Banerjee A, Banerjee UC.	Biomacromolecules	10.1021/bm0507913	2006
Enzymology	Enzymatic preparation of cefaclor with immobilized penicillin acylase.	Zhang YW, Wei DZ.	Prep Biochem Biotechnol	10.1080/10826060701884046	2008
Metabolism	Bacterial decolorization of acid orange 7 in the presence of ionic and non-ionic surfactants.	Avramova T, Stefanova L, Angelova B, Mutafov S.	Z Naturforsch C J Biosci	10.1515/znc-2007-1-216	2007
Metabolism	The sulfonated osmolyte N-methyltaurine is dissimilated by Alcaligenes faecalis and by Paracoccus versutus with release of methylamine.	Weinitschke S, Denger K, Smits THM, Hollemeyer K, Cook AM.	Microbiology (Reading)	10.1099/mic.0.28622-0	2006
	Advances in Nanotechnology for Biofilm Inhibition.	Kumar L, Bisen M, Harjai K, Chhibber S, Azizov S, Lalhlenmawia H, Kumar D.	ACS Omega	10.1021/acsomega.3c02239	2023
Metabolism	Crystal structure of an electron transfer complex between aromatic amine dehydrogenase and azurin from Alcaligenes faecalis.	Sukumar N, Chen ZW, Ferrari D, Merli A, Rossi GL, Bellamy HD, Chistoserdov A, Davidson VL, Mathews FS.	Biochemistry	10.1021/bi0612972	2006
	Identification of novel extracellular putative chitinase and hydrolase from Geomyces sp. B10I with the biodegradation activity towards polyesters.	Urbanek AK, Arroyo M, de la Mata I, Mironczuk AM.	AMB Express	10.1186/s13568-022-01352-7	2022
Phylogeny	Chronic lower extremity wound infection due to Kerstersia gyiorum in a patient with Buerger's disease: a case report.	Baran I, Duzgun AP, Mumcuoglu I, Aksu N.	BMC Infect Dis	10.1186/s12879-017-2711-3	2017
Metabolism	Alcaligenes faecalis kw-a biofilm for denitrification of nitrate-rich effluent.	Jadhav TS, Faldu NJ, Patel P, Narolkar SN, Nerurkar AS.	Indian J Exp Biol		2005
Stress	A general temperature-guided language model to design proteins of enhanced stability and activity.	Jiang F, Li M, Dong J, Yu Y, Sun X, Wu B, Huang J, Kang L, Pei Y, Zhang L, Wang S, Xu W, Xin J, Ouyang W, Fan G, Zheng L, Tan Y, Hu Z, Xiong Y, Feng Y, Yang G, Liu Q, Song J, Liu J, Hong L, Tan P.	Sci Adv	10.1126/sciadv.adr2641	2024
	Gold and silver nanoparticles: Green synthesis, microbes, mechanism, factors, plant disease management and environmental risks.	Al-Khattaf FS.	Saudi J Biol Sci	10.1016/j.sjbs.2021.03.078	2021
	Targeting Dectin-1 and or VISTA enhances anti-tumor immunity in melanoma but not colorectal cancer model.	Mashhouri S, Rahmati A, Azimi A, Fava RA, Ismail IH, Walker J, Elahi S.	Cell Oncol (Dordr)	10.1007/s13402-024-00950-w	2024
	Identifying bioaugmentation candidates for bioremediation of polycyclic aromatic hydrocarbons in contaminated estuarine sediment of the Elizabeth River, VA, USA.	Volkoff SJ, Rodriguez DL, Singleton DR, McCumber AW, Aitken MD, Stewart JR, Gunsch CK.	Appl Microbiol Biotechnol	10.1007/s00253-021-11754-5	2022
	Effect of Curdlan on the Rheological Properties of Hydroxypropyl Methylcellulose.	Zhang L, Yue LN, Qian JY, Ding XL.	Foods	10.3390/foods10010034	2020
Enzymology	Pancreatic abscess secondary to Alcaligenes faecalis.	Ashwath ML, Katner HP.	Am J Med Sci	10.1097/00000441-200501000-00011	2005
Phylogeny	Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers.	Helen D, Kim H, Tytgat B, Anne W.	BMC Genomics	10.1186/s12864-016-2465-0	2016
	Bacteraemia, Malaria, and Case Fatality Among Children Hospitalized With Fever in Dar es Salaam, Tanzania.	Moyo SJ, Manyahi J, Blomberg B, Tellevik MG, Masoud NS, Aboud S, Manji K, Roberts AP, Hanevik K, Morch K, Langeland N.	Front Microbiol	10.3389/fmicb.2020.02118	2020
Pathogenicity	Pseudomonas aeruginosa Las quorum sensing autoinducer suppresses growth and biofilm production in Legionella species.	Kimura S, Tateda K, Ishii Y, Horikawa M, Miyairi S, Gotoh N, Ishiguro M, Yamaguchi K.	Microbiology (Reading)	10.1099/mic.0.026641-0	2009
Pathogenicity	Siderophore Production by Rhizosphere Biological Control Bacteria Brevibacillus brevis GZDF3 of Pinellia ternata and Its Antifungal Effects on Candida albicans.	Sheng MM, Jia HK, Zhang GY, Zeng LN, Zhang TT, Long YH, Lan J, Hu ZQ, Zeng Z, Wang B, Liu HM.	J Microbiol Biotechnol	10.4014/jmb.1910.10066	2020
Pathogenicity	An Alcaligenes strain emulates Bacillus thuringiensis producing a binary protein that kills corn rootworm through a mechanism similar to Cry34Ab1/Cry35Ab1.	Yalpani N, Altier D, Barry J, Kassa A, Nowatzki TM, Sethi A, Zhao JZ, Diehn S, Crane V, Sandahl G, Guan R, Poland B, Perez Ortega C, Nelson ME, Xie W, Liu L, Wu G.	Sci Rep	10.1038/s41598-017-03544-9	2017
Enzymology	Oligomeric interactions maintain active-site structure in a noncooperative enzyme family.	Li Y, Zhang R, Wang C, Forouhar F, Clarke OB, Vorobiev S, Singh S, Montelione GT, Szyperski T, Xu Y, Hunt JF.	EMBO J	10.15252/embj.2021108368	2022
Pathogenicity	Spatial Organization of Dectin-1 and TLR2 during Synergistic Crosstalk Revealed by Super-resolution Imaging.	Li M, Vultorius C, Bethi M, Yu Y.	J Phys Chem B	10.1021/acs.jpcb.2c03557	2022
	Chinese Black Truffle-Associated Bacterial Communities of Tuber indicum From Different Geographical Regions With Nitrogen Fixing Bioactivity.	Chen J, Li JM, Tang YJ, Xing YM, Qiao P, Li Y, Liu PG, Guo SX.	Front Microbiol	10.3389/fmicb.2019.02515	2019
Pathogenicity	Native and IgE-primed rat peritoneal mast cells exert pro-inflammatory activity and migrate in response to yeast zymosan upon Dectin-1 engagement.	Zelechowska P, Brzezinska-Blaszczyk E, Rozalska S, Agier J, Kozlowska E.	Immunol Res	10.1007/s12026-021-09183-7	2021
	Characterization of Immobilized Magnetic Fe₃O₄ Nanoparticles on Raoultella Ornithinolytica sp. and Its Application for Azo Dye Removal.	Bekhit F, Farag S, Attia AM.	Appl Biochem Biotechnol	10.1007/s12010-022-04076-3	2022
	Isolation of Hermetia illucens larvae core gut microbiota by two different cultivation strategies.	Cifuentes Y, Vilcinskas A, Kampfer P, Glaeser SP.	Antonie Van Leeuwenhoek	10.1007/s10482-022-01735-7	2022
Enzymology	Enhancing enzymatic activity of penicillin G acylase by coexpressing pcm gene.	Wang T, Zhu H, Ma X, Fei Z, Ma Y, Wei D.	Appl Microbiol Biotechnol	10.1007/s00253-006-0349-y	2006
Metabolism	A Mini Review on Microcystins and Bacterial Degradation.	Massey IY, Yang F.	Toxins (Basel)	10.3390/toxins12040268	2020
Enzymology	Tryptophan tryptophylquinone cofactor biogenesis in the aromatic amine dehydrogenase of Alcaligenes faecalis. Cofactor assembly and catalytic properties of recombinant enzyme expressed in Paracoccus denitrificans.	Hothi P, Khadra KA, Combe JP, Leys D, Scrutton NS.	FEBS J	10.1111/j.1742-4658.2005.04990.x	2005
Enzymology	Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase.	Kanazawa H, Hoque MM, Tsunoda M, Suzuki K, Yamamoto T, Kawai G, Kondo J, Takenaka A.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x16007767	2016
	Sierra Nevada sweep: metagenomic measurements of bioaerosols vertically distributed across the troposphere.	Jaing C, Thissen J, Morrison M, Dillon MB, Waters SM, Graham GT, Be NA, Nicoll P, Verma S, Caro T, Smith DJ.	Sci Rep	10.1038/s41598-020-69188-4	2020
	Characterization of Thiomonas delicata arsenite oxidase expressed in Escherichia coli.	Teoh WK, Salleh FM, Shahir S.	3 Biotech	10.1007/s13205-017-0740-7	2017
Enzymology	Cyanide Hydratase Modification Using Computational Design and Docking Analysis for Improved Binding Affinity in Cyanide Detoxification.	Malmir N, Fard NA, Mgwatyu Y, Mekuto L.	Molecules	10.3390/molecules26061799	2021
	Topical Administration of Lactiplantibacillus plantarum Accelerates the Healing of Chronic Diabetic Foot Ulcers through Modifications of Infection, Angiogenesis, Macrophage Phenotype and Neutrophil Response.	Arganaraz Aybar JN, Ortiz Mayor S, Olea L, Garcia JJ, Nisoria S, Kolling Y, Melian C, Rachid M, Torres Dimani R, Werenitzky C, Lorca C, Salva S, Gobbato N, Villena J, Valdez JC.	Microorganisms	10.3390/microorganisms10030634	2022
	Production of biogenic amines by microflora inoculated in meats.	Min JS, Lee SO, Jang A, Lee M, Kim Y.	Asian-Australas J Anim Sci		2004
Pathogenicity	Antibacterial activity of guava (Psidium guajava L.) and Neem (Azadirachta indica A. Juss.) extracts against foodborne pathogens and spoilage bacteria.	Mahfuzul Hoque MD, Bari ML, Inatsu Y, Juneja VK, Kawamoto S.	Foodborne Pathog Dis	10.1089/fpd.2007.0040	2007
Metabolism	High incidence of plant growth-stimulating bacteria associated with the rhizosphere of wheat grown on salinated soil in Uzbekistan.	Egamberdieva D, Kamilova F, Validov S, Gafurova L, Kucharova Z, Lugtenberg B.	Environ Microbiol	10.1111/j.1462-2920.2007.01424.x	2008
	Antifungal and antibacterial activities of polyherbal toothpaste against oral pathogens, in vitro.	Sadeghi-Nejad B, Moghimipour E, Yusef Naanaie S, Nezarat S.	Curr Med Mycol	10.18502/cmm.4.2.65	2018
Metabolism	Cadmium-Tolerant Rhizospheric Bacteria of the C₃/CAM Intermediate Semi-Halophytic Common Ice Plant (Mesembryanthemum crystallinum L.) Grown in Contaminated Soils.	Supel P, Sliwa-Cebula M, Miszalski Z, Kaszycki P.	Front Plant Sci	10.3389/fpls.2022.820097	2022
	Poly(levodopa)-Functionalized Polysaccharide Hydrogel Enriched in Fe₃O₄ Particles for Multiple-Purpose Biomedical Applications.	Michalicha A, Tomaszewska A, Vivcharenko V, Budzynska B, Kulpa-Greszta M, Fila D, Pazik R, Belcarz A.	Int J Mol Sci	10.3390/ijms24098002	2023
Metabolism	Detoxification of toxic heavy metals by marine bacteria highly resistant to mercury.	De J, Ramaiah N, Vardanyan L.	Mar Biotechnol (NY)	10.1007/s10126-008-9083-z	2008
	In silico Prediction of Malvaviscus arboreus Metabolites and Green Synthesis of Silver Nanoparticles - Opportunities for Safer Anti-Bacterial and Anti-Cancer Precision Medicine.	Mohammed AE, Alghamdi SS, Shami A, Suliman RS, Aabed K, Alotaibi MO, Rahman I.	Int J Nanomedicine	10.2147/ijn.s400195	2023
	Chemical Characterization, Crossfeeding and Uptake Studies on Hydroxamate Siderophore of Alcaligenes faecalis.	Sayyed RZ, Chincholkar SB, Meyer JM, Kale SP.	Indian J Microbiol	10.1007/s12088-011-0129-y	2011
	Glycine betaine enhances biodegradation of phenol in high saline environments by the halophilic strain Oceanobacillus sp. PT-20.	Long X, Wang D, Zou Y, Tian J, Tian Y, Liao X.	RSC Adv	10.1039/c9ra05163e	2019
Metabolism	Temperature effect on bacterial azo bond reduction kinetics: an Arrhenius plot analysis.	Angelova B, Avramova T, Stefanova L, Mutafov S.	Biodegradation	10.1007/s10532-007-9144-4	2008
	Curdlan-Chitosan Electrospun Fibers as Potential Scaffolds for Bone Regeneration.	Toullec C, Le Bideau J, Geoffroy V, Halgand B, Buchtova N, Molina-Pena R, Garcion E, Avril S, Sindji L, Dube A, Boury F, Jerome C.	Polymers (Basel)	10.3390/polym13040526	2021
	Polyvinyl alcohol degradation by Bacillus cereus RA23 from oil sludge sample.	Ullah M, Li H, Sun SW, Weng CH, Zhang H, Zhu H.	3 Biotech	10.1007/s13205-019-1882-6	2019
	DMSOP-cleaving enzymes are diverse and widely distributed in marine microorganisms.	Carrion O, Li CY, Peng M, Wang J, Pohnert G, Azizah M, Zhu XY, Curson ARJ, Wang Q, Walsham KS, Zhang XH, Monaco S, Harvey JM, Chen XL, Gao C, Wang N, Wang XJ, Wang P, Giovanonni SJ, Lee CP, Suffridge CP, Zhang Y, Luo Z, Wang D, Todd JD, Zhang YZ.	Nat Microbiol	10.1038/s41564-023-01526-4	2023
	Decolorization of Acid Orange 7 by bacteria of different tinctorial type: a comparative study	Mutafov S, Avramova T, Stefanova L, Angelova B.	World J Microbiol Biotechnol	10.1007/s11274-006-9241-2	2007
Enzymology	Inoculation with Azospirillum brasilense and/or Pseudomonas geniculata reinforces flax (Linum usitatissimum) growth by improving physiological activities under saline soil conditions.	Omer AM, Osman MS, Badawy AA.	Bot Stud	10.1186/s40529-022-00345-w	2022
Enzymology	A Novel Triculture System (CC3) for Simultaneous Enzyme Production and Hydrolysis of Common Grasses through Submerged Fermentation.	Leo VV, Passari AK, Joshi JB, Mishra VK, Uthandi S, Ramesh N, Gupta VK, Saikia R, Sonawane VC, Singh BP.	Front Microbiol	10.3389/fmicb.2016.00447	2016
	The influence of curcumin additives on the viability of probiotic bacteria, antibacterial activity against pathogenic microorganisms, and quality indicators of low-fat yogurt.	Buniowska-Olejnik M, Urbanski J, Mykhalevych A, Bieganowski P, Znamirowska-Piotrowska A, Kacaniova M, Banach M.	Front Nutr	10.3389/fnut.2023.1118752	2023
Metabolism	16S rRNA gene profiling of bacterial communities mediating production of tsetse attractive phenols in mammalian urine.	Musonye HA, Njeru EM, Hassanali A, Langata LM, Mijele D, Kaitho T, King'ori E, Nonoh J.	Onderstepoort J Vet Res	10.4102/ojvr.v86i1.1724	2019
	Dectin-1 synergizes with TLR2 and TLR4 for cytokine production in human primary monocytes and macrophages.	Ferwerda G, Meyer-Wentrup F, Kullberg BJ, Netea MG, Adema GJ.	Cell Microbiol	10.1111/j.1462-5822.2008.01188.x	2008
	Dirammox Is Widely Distributed and Dependently Evolved in Alcaligenes and Is Important to Nitrogen Cycle.	Hou TT, Miao LL, Peng JS, Ma L, Huang Q, Liu Y, Wu MR, Ai GM, Liu SJ, Liu ZP.	Front Microbiol	10.3389/fmicb.2022.864053	2022
	The use of solid waste of a nylon-6 plant as a nutrient for bacterial decolourisation of dyes	Baxi NN, Shah AK.	World J Microbiol Biotechnol	10.1007/s11274-007-9360-4	2007
Metabolism	Isolation and characterization of a chlorpyrifos and 3,5,6-trichloro-2-pyridinol degrading bacterium.	Yang L, Zhao YH, Zhang BX, Yang CH, Zhang X.	FEMS Microbiol Lett	10.1016/j.femsle.2005.07.031	2005
Metabolism	Lipid-Binding Aegerolysin from Biocontrol Fungus Beauveria bassiana.	Krasevec N, Panevska A, Lemez S, Razinger J, Sepcic K, Anderluh G, Podobnik M.	Toxins (Basel)	10.3390/toxins13110820	2021
Metabolism	Decolorisation and detoxification of Direct Blue-15 by a bacterial consortium.	Kumar K, Devi SS, Krishnamurthi K, Dutta D, Chakrabarti T.	Bioresour Technol	10.1016/j.biortech.2006.10.037	2007
Metabolism	[Influence of nitrogen source NH4 Cl concentration on curdlan production in Alcaligenes faecalis].	Sun YS, Wang L, Zhan XB, Zheng ZY, Chen YZ.	Sheng Wu Gong Cheng Xue Bao		2005
Enzymology	Molecular Cloning, Characterization, and Application of Organic Solvent-Stable and Detergent-Compatible Thermostable Alkaline Protease from Geobacillus thermoglucosidasius SKF4.	Allison SD, AdeelaYasid N, Shariff FM, Abdul Rahman N.	J Microbiol Biotechnol	10.4014/jmb.2306.06050	2024
	The substrate-bound type 2 copper site of nitrite reductase: the nitrogen hyperfine coupling of nitrite revealed by pulsed EPR.	Fittipaldi M, Wijma HJ, Verbeet MP, Canters GW, Groenen EJ, Huber M.	Biochemistry	10.1021/bi0513913	2005
	Synthesis and antimicrobial properties of 4-acylaminobenzenethiosulfoacid S-esters.	Lubenets V, Vasylyuk S, Monka N, Bolibrukh K, Komarovska-Porokhnyavets O, Baranovych D, Musyanovych R, Zaczynska E, Czarny A, Nawrot U, Novikov V.	Saudi Pharm J	10.1016/j.jsps.2016.06.007	2017
	Rapid Non-Destructive Quantification of Eugenol in Curdlan Biofilms by Electronic Nose Combined with Gas Chromatography-Mass Spectrometry.	Han L, Zhu J, Fan X, Zhang C, Tu K, Peng J, Wang J, Pan L.	Sensors (Basel)	10.3390/s20164441	2020
Metabolism	Highly Porous Fluorapatite/beta-1,3-Glucan Composite for Bone Tissue Regeneration: Characterization and In-Vitro Assessment of Biomedical Potential.	Borkowski L, Przekora A, Belcarz A, Palka K, Jojczuk M, Lukasiewicz P, Nogalski A, Ginalska G.	Int J Mol Sci	10.3390/ijms221910414	2021
	Discovery, synthesis and antibacterial evaluation of phenolic compounds from Cylicodiscus gabunensis.	Aldulaimi O, Drijfhout F, Uche FI, Horrocks P, Li WW.	BMC Complement Altern Med	10.1186/s12906-019-2589-2	2019
	Growth and siderophores production in Alcaligenes faecalis is regulated by metal ions.	Sayyed RZ, Chincholkar SB.	Indian J Microbiol	10.1007/s12088-010-0021-1	2010
Enzymology	Epiphytic PGPB Bacillus megaterium AFI1 and Paenibacillus nicotianae AFI2 Improve Wheat Growth and Antioxidant Status under Ni Stress.	Pishchik VN, Filippova PS, Mirskaya GV, Khomyakov YV, Vertebny VE, Dubovitskaya VI, Ostankova YV, Semenov AV, Chakrabarty D, Zuev EV, Chebotar VK.	Plants (Basel)	10.3390/plants10112334	2021
Pathogenicity	Physicochemical and Biological Evaluation of Curdlan-Poly(Lactic-Co-Glycolic Acid) Nanoparticles as a Host-Directed Therapy Against Mycobacterium Tuberculosis.	D'Souza S, Du Plessis SM, Egieyeh S, Bekale RB, Maphasa RE, Irabin AF, Sampson SL, Dube A.	J Pharm Sci	10.1016/j.xphs.2021.09.012	2022
Enzymology	DddY, a periplasmic dimethylsulfoniopropionate lyase found in taxonomically diverse species of Proteobacteria.	Curson AR, Sullivan MJ, Todd JD, Johnston AW.	ISME J	10.1038/ismej.2010.203	2011
Enzymology	[Constitutive expression and purification of Alcaligenes faecalis penicillin G acylase in Escherichia coli].	Yang ZJ, Cai J, Sun J, Yuan ZY.	Sheng Wu Gong Cheng Xue Bao		2004
	More Prominent Inflammatory Response to Pachyman than to Whole-Glucan Particle and Oat-beta-Glucans in Dextran Sulfate-Induced Mucositis Mice and Mouse Injection through Proinflammatory Macrophages.	Hiengrach P, Visitchanakun P, Finkelman MA, Chancharoenthana W, Leelahavanichkul A.	Int J Mol Sci	10.3390/ijms23074026	2022
	Irradiation and organic acid treatment for microbial control and the production of biogenic amines in beef and pork	Min JS, Lee SO, Jang A, Jo C, Lee M.	Food Chemistry.	10.1016/j.foodchem.2006.12.030	2007
	Chemical Components of Aqueous Extracts of Melia azedarach Fruits and Their Effects on The Transcriptome of Staphylococcus aureus.	Peng H, Wang YS, Wang J, Li SJ, Sun TL, Liu T, Shi QS, Zhou G, Xie XB.	Pol J Microbiol	10.33073/pjm-2021-041	2021
	Performance of mass spectrometric identification of bacteria and yeasts routinely isolated in a clinical microbiology laboratory using MALDI-TOF MS.	Wang W, Xi H, Huang M, Wang J, Fan M, Chen Y, Shao H, Li X.	J Thorac Dis	10.3978/j.issn.2072-1439.2014.02.17	2014
	Penicillin Acylase-Catalyzed Effective and Stereoselective Acylation of 1-phenylethylamine in Aqueous Medium using Non-Activated Acyl Donor.	Guranda DT, Ushakov GA, Svedas VK.	Acta Naturae	10.32607/20758251-2010-2-1-94-96	2010
Enzymology	Aerobic bacteria associated with chronic suppurative otitis media in Angola.	Udden F, Filipe M, Reimer A, Paul M, Matuschek E, Thegerstrom J, Hammerschmidt S, Pelkonen T, Riesbeck K.	Infect Dis Poverty	10.1186/s40249-018-0422-7	2018
	Antimicrobial efficacy of aqueous ozone in combination with short chain fatty acid buffers.	Britton HC, Draper M, Talmadge JE.	Infect Prev Pract	10.1016/j.infpip.2019.100032	2020
Phylogeny	Microbial communities associated with the co-metabolism of free cyanide and thiocyanate under alkaline conditions.	Mekuto L, Ntwampe SKO, Mudumbi JBN.	3 Biotech	10.1007/s13205-018-1124-3	2018
Enzymology	Crystallization and X-ray structure analysis of a thermostable penicillin G acylase from Alcaligenes faecalis.	Varshney NK, Kumar RS, Ignatova Z, Prabhune A, Pundle A, Dodson E, Suresh CG.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309111053930	2012
	Reduction of Oxidative Stress through Activating the Nrf2 mediated HO-1 Antioxidant Efficacy Signaling Pathway by MS15, an Antimicrobial Peptide from Bacillus velezensis.	Khan MM, Kim YK, Bilkis T, Suh JW, Lee DY, Yoo JC.	Antioxidants (Basel)	10.3390/antiox9100934	2020
Pathogenicity	Control of microorganisms and reduction of biogenic amines in chicken breast and thigh by irradiation and organic acids.	Min JS, Lee SO, Jang A, Jo C, Lee M.	Poult Sci	10.1093/ps/86.9.2034	2007
Transcriptome	Selenite Reduction by Proteus sp. YS02: New Insights Revealed by Comparative Transcriptomics and Antibacterial Effectiveness of the Biogenic Se⁰ Nanoparticles.	Wang Y, Ye Q, Sun Y, Jiang Y, Meng B, Du J, Chen J, Tugarova AV, Kamnev AA, Huang S.	Front Microbiol	10.3389/fmicb.2022.845321	2022
Enzymology	A homology model of penicillin acylase from Alcaligenes faecalis and in silico evaluation of its selectivity.	Braiuca P, Ebert C, Fischer L, Gardossi L, Linda P.	Chembiochem	10.1002/cbic.200200545	2003
	Enhanced Iron Uptake in Plants by Volatile Emissions of Rahnella aquatilis JZ-GX1.	Kong WL, Wang YH, Wu XQ.	Front Plant Sci	10.3389/fpls.2021.704000	2021
Enzymology	Probiotic strain Stenotrophomonas acidaminiphila BJ1 degrades and reduces chlorothalonil toxicity to soil enzymes, microbial communities and plant roots.	Zhang Q, Saleem M, Wang C.	AMB Express	10.1186/s13568-017-0530-y	2017
Metabolism	Fragments of pro-peptide activate mature penicillin amidase of Alcaligenes faecalis.	Kasche V, Galunsky B, Ignatova Z.	Eur J Biochem	10.1046/j.1432-1033.2003.03871.x	2003
	Plant growth-promoting rhizobacterium Bacillus megaterium modulates the expression of antioxidant-related and drought-responsive genes to protect rice (Oryza sativa L.) from drought.	Lee S, Kim JA, Song J, Choe S, Jang G, Kim Y.	Front Microbiol	10.3389/fmicb.2024.1430546	2024
Metabolism	Effect of Alcaligenes faecalis on nitrous oxide emission and nitrogen removal in three phase fluidized bed process.	Kim JS, Kim SJ, Lee BH.	J Environ Sci Health A Tox Hazard Subst Environ Eng	10.1081/ese-120037878	2004
Enzymology	Investigating a persistent odor at an aircraft seat manufacturer.	Broadwater K, de Perio MA, Roberts J, Burton NC, Lemons AR, Green BJ, Brueck SE.	J Occup Environ Hyg	10.1080/15459624.2016.1183017	2016
	Human Interleukin-2 and Hen Egg White Lysozyme: Screening for Bacteriolytic Activity against Various Bacterial Cells.	Levashov PA, Ovchinnikova ED, Morozova OA, Matolygina DA, Osipova HE, Cherdyntseva TA, Savin SS, Zakharova GS, Alekseeva AA, Belogurova NG, Smirnov SA, Tishkov VI, Levashov AV.	Acta Naturae	10.32607/20758251-2016-8-1-98-102	2016
Metabolism	Novel Anti-Fungal d-Laminaripentaose-Releasing Endo-beta-1,3-glucanase with a RICIN-like Domain from Cellulosimicrobium funkei HY-13.	Bai L, Kim J, Son KH, Shin DH, Ku BH, Kim DY, Park HY.	Biomolecules	10.3390/biom11081080	2021
	Effects of Modified Atmosphere Packaging with Various CO₂ Concentrations on the Bacterial Community and Shelf-Life of Smoked Chicken Legs.	Wang Q, Chen Q, Xu J, Sun F, Liu H, Kong B.	Foods	10.3390/foods11040559	2022
Enzymology	Bioreactor cultivation of Escherichia coli for production of recombinant penicillin G amidase from Alcaligenes faecalis.	Deak PM, Lutz-Wahl S, Bothe H, Fischer L.	Biotechnol Lett	10.1023/a:1022498314354	2003
Metabolism	Complete conversion of nitrate into dinitrogen gas in co-cultures of denitrifying bacteria.	Van de Pas-Schoonen KT, Schalk-Otte S, Haaijer S, Schmid M, Op den Camp H, Strous M, Gijs Kuenen J, Jetten MS.	Biochem Soc Trans	10.1042/bst0330205	2005
	Characterisation of bacteria isolated from the stingless bee, Heterotrigona itama, honey, bee bread and propolis.	Ngalimat MS, Raja Abd Rahman RNZ, Yusof MT, Syahir A, Sabri S.	PeerJ	10.7717/peerj.7478	2019
	Modulation of gut microbiota and fecal metabolites by corn silk among high-fat diet-induced hypercholesterolemia mice.	Ding L, Ren S, Song Y, Zang C, Liu Y, Guo H, Yang W, Guan H, Liu J.	Front Nutr	10.3389/fnut.2022.935612	2022
	Antibiogram, Prevalence of OXA Carbapenemase Encoding Genes, and RAPD-Genotyping of Multidrug-Resistant Acinetobacter baumannii Incriminated in Hidden Community-Acquired Infections.	El-Kazzaz W, Metwally L, Yahia R, Al-Harbi N, El-Taher A, Hetta HF.	Antibiotics (Basel)	10.3390/antibiotics9090603	2020
	Mechanism and kinetics of chlorpyrifos co-metabolism by using environment restoring microbes isolated from rhizosphere of horticultural crops under subtropics.	Kumar G, Lal S, Soni SK, Maurya SK, Shukla PK, Chaudhary P, Bhattacherjee AK, Garg N.	Front Microbiol	10.3389/fmicb.2022.891870	2022
	Diabetic Wound Repair: From Mechanism to Therapeutic Opportunities.	Wang R, Gu S, Kim YH, Lee A, Lin H, Jiang D.	MedComm (2020)	10.1002/mco2.70406	2025
	Detection of high serum levels of beta-D-Glucan in disseminated nocardial infection: a case report.	Sawai T, Nakao T, Yamaguchi S, Yoshioka S, Matsuo N, Suyama N, Yanagihara K, Mukae H.	BMC Infect Dis	10.1186/s12879-017-2370-4	2017
	Enhancing the Activity of Carboxymethyl Cellulase Enzyme Using Highly Stable Selenium Nanoparticles Biosynthesized by Bacillus paralicheniformis Y4.	Wang Y, Yu Y, Duan Y, Wang Q, Cong X, He Y, Gao C, Hafeez M, Jan S, Rasheed SM, Cheng S, Wang Z.	Molecules	10.3390/molecules27144585	2022
	Metagenomic analysis reveals wide distribution of phototrophic bacteria in hydrothermal vents on the ultraslow-spreading Southwest Indian Ridge.	Chen H, Li DH, Jiang AJ, Li XG, Wu SJ, Chen JW, Qu MJ, Qi XQ, Dai J, Zhao R, Zhang WJ, Liu SS, Wu LF.	Mar Life Sci Technol	10.1007/s42995-021-00121-y	2022
	Conjunctival bacterial and fungal flora in clinically normal sheep.	Bonelli F, Barsotti G, Attili AR, Mugnaini L, Cuteri V, Preziuso S, Corazza M, Preziuso G, Sgorbini M.	Vet Rec Open	10.1136/vropen-2013-000017	2014
Metabolism	[Isolation and characterization of a chlorpyrifos degrading bacteria and its bioremediation application in the soil].	Yang L, Zhao YH, Zhang BX, Zhang X.	Wei Sheng Wu Xue Bao		2005
Phylogeny	Genomic analysis reveals widespread occurrence of new classes of copper nitrite reductases.	Ellis MJ, Grossmann JG, Eady RR, Hasnain SS.	J Biol Inorg Chem	10.1007/s00775-007-0282-2	2007
	Green synthesis of AgNPs@PPE and its Pseudomonas aeruginosa biofilm formation activity compared to pomegranate peel extract.	Habibipour R, Moradi-Haghgou L, Farmany A.	Int J Nanomedicine	10.2147/ijn.s209912	2019
	Assessing Metagenomic Signals Recovered from Lyuba, a 42,000-Year-Old Permafrost-Preserved Woolly Mammoth Calf.	Ferrari G, Lischer HEL, Neukamm J, Rayo E, Borel N, Pospischil A, Ruhli F, Bouwman AS, Campana MG.	Genes (Basel)	10.3390/genes9090436	2018
Phylogeny	Molecular characterization of midgut microbiota of Aedes albopictus and Aedes aegypti from Arunachal Pradesh, India.	Yadav KK, Bora A, Datta S, Chandel K, Gogoi HK, Prasad GB, Veer V.	Parasit Vectors	10.1186/s13071-015-1252-0	2015
Metabolism	A synthetic microbial biosensor for high-throughput screening of lactam biocatalysts.	Yeom SJ, Kim M, Kwon KK, Fu Y, Rha E, Park SH, Lee H, Kim H, Lee DH, Kim DM, Lee SG.	Nat Commun	10.1038/s41467-018-07488-0	2018
Metabolism	Paecilomyces variotii: A Fungus Capable of Removing Ammonia Nitrogen and Inhibiting Ammonia Emission from Manure.	Liu Z, Liu G, Cai H, Shi P, Chang W, Zhang S, Zheng A, Xie Q, Ma J.	PLoS One	10.1371/journal.pone.0158089	2016
	Drought Tolerant Enterobacter sp./Leclercia adecarboxylata Secretes Indole-3-acetic Acid and Other Biomolecules and Enhances the Biological Attributes of Vigna radiata (L.) R. Wilczek in Water Deficit Conditions.	Ahmed B, Shahid M, Syed A, Rajput VD, Elgorban AM, Minkina T, Bahkali AH, Lee J.	Biology (Basel)	10.3390/biology10111149	2021
	Coacervate Thermoresponsive Polysaccharide Nanoparticles as Delivery System for Piroxicam.	Lachowicz D, Kaczynska A, Bodzon-Kulakowska A, Karewicz A, Wirecka R, Szuwarzynski M, Zapotoczny S.	Int J Mol Sci	10.3390/ijms21249664	2020
	Curcumin, a Natural Antimicrobial Agent with Strain-Specific Activity.	Adamczak A, Ozarowski M, Karpinski TM.	Pharmaceuticals (Basel)	10.3390/ph13070153	2020
Metabolism	Probing the unusual oxidation/reduction behavior of Paracoccus pantotrophus cytochrome cd1 nitrite reductase by replacing a switchable methionine heme iron ligand with histidine.	Zajicek RS, Cartron ML, Ferguson SJ.	Biochemistry	10.1021/bi0604983	2006
	Microbial structure and nitrogen compound conversions in aerobic granular sludge reactors with non-aeration phases and acetate pulse feeding.	Cydzik-Kwiatkowska A, Rusanowska P, Zielinska M, Bernat K, Wojnowska-Baryla I.	Environ Sci Pollut Res Int	10.1007/s11356-016-7709-7	2016
Enzymology	Purification and characterization of Alcaligenes faecalis penicillin G acylase expressed in Bacillus subtilis.	Zhou Z, Zhou LP, Chen MJ, Zhang YL, Li RB, Yang S, Yuan ZY.	Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai)		2003
Metabolism	Selection and identification of bacteria isolated from waste crude oil with polycyclic aromatic hydrocarbons removal capacities.	Toledo FL, Calvo C, Rodelas B, Gonzalez-Lopez J.	Syst Appl Microbiol	10.1016/j.syapm.2005.09.003	2006
	In silico analysis of bacterial arsenic islands reveals remarkable synteny and functional relatedness between arsenate and phosphate.	Li H, Li M, Huang Y, Rensing C, Wang G.	Front Microbiol	10.3389/fmicb.2013.00347	2013
	Efficacy of a natural coagulant protein from Moringa oleifera (Lam) seeds in treatment of Opa reservoir water, Ile-Ife, Nigeria.	Taiwo AS, Adenike K, Aderonke O.	Heliyon	10.1016/j.heliyon.2020.e03335	2020
Enzymology	Crystallization and preliminary crystallographic analysis of a D-aminoacylase from Alcaligenes faecalis DA1.	Hsu CS, Chen SJ, Tsai YC, Lin TW, Liaw SH, Wang AH.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444902011046	2002
Enzymology	Purification and characterization of alkaline protease from Alcaligenes faecalis.	Thangam EB, Rajkumar GS.	Biotechnol Appl Biochem	10.1042/ba20010013	2002
Biotechnology	Harnessing the Potential of Bacillus altitudinis MT422188 for Copper Bioremediation.	Khan M, Kamran M, Kadi RH, Hassan MM, Elhakem A, Sakit ALHaithloul HA, Soliman MH, Mumtaz MZ, Ashraf M, Shamim S.	Front Microbiol	10.3389/fmicb.2022.878000	2022
	Induction of Salt Tolerance in Arabidopsis thaliana by Volatiles From Bacillus amyloliquefaciens FZB42 via the Jasmonic Acid Signaling Pathway.	Liu S, Tian Y, Jia M, Lu X, Yue L, Zhao X, Jin W, Wang Y, Zhang Y, Xie Z, Wang R.	Front Microbiol	10.3389/fmicb.2020.562934	2020
Pathogenicity	The efficacy of postenucleation saline wash and the effect of different antimicrobial agents on microbial contamination of donor eyes.	Panda A, Saxena R, Vajpayee RB, Satpathy G, Angra SK, Sethi HS.	Ophthalmic Res	10.1159/000095772	2006
Biotechnology	Isolation of Indole Utilizing Bacteria Arthrobacter sp. and Alcaligenes sp. From Livestock Waste.	Kim M, Lee JH, Kim E, Choi H, Kim Y, Lee J.	Indian J Microbiol	10.1007/s12088-016-0570-z	2016
	Use of Therapeutic Pathogen Recognition Receptor Ligands for Osteo-Immunomodulation.	Khokhani P, Rahmani NR, Kok A, Oner FC, Alblas J, Weinans H, Kruyt MC, Croes M.	Materials (Basel)	10.3390/ma14051119	2021
	Electrochemical studies of arsenite oxidase: an unusual example of a highly cooperative two-electron molybdenum center.	Hoke KR, Cobb N, Armstrong FA, Hille R.	Biochemistry	10.1021/bi0357154	2004
Metabolism	Rapid Biodegradation of the Organophosphorus Insecticide Chlorpyrifos by Cupriavidus nantongensis X1^T.	Shi T, Fang L, Qin H, Chen Y, Wu X, Hua R.	Int J Environ Res Public Health	10.3390/ijerph16234593	2019
Enzymology	Postkeratoplasty endophthalmitis by Alcaligenes faecalis: a case report.	Khokhar DS, Sethi HS, Kumar H, Sudan R, Sharma N, Nayak N.	Cornea	10.1097/00003226-200203000-00024	2002
	In vitro prebiotic potential, digestibility and biocompatibility properties of laminari-oligosaccharides produced from curdlan by beta-1,3-endoglucanase from Clostridium thermocellum.	Kumar K, Rajulapati V, Goyal A.	3 Biotech	10.1007/s13205-020-02234-0	2020
Metabolism	Long-term analysis of diesel fuel consumption in a co-culture of Acinetobacter venetianus, Pseudomonas putida and Alcaligenes faecalis.	Pepi M, Minacci A, Di Cello F, Baldi F, Fani R.	Antonie Van Leeuwenhoek	10.1023/a:1022930421705	2003
	Rapid detection of cytochrome cd1-containing nitrite reductase encoding gene nirS of denitrifying bacteria with loop-mediated isothermal amplification assay.	Zhang X, Yang Q, Zhang Q, Jiang X, Wang X, Li Y, Zhao J, Qu K.	Sci Rep	10.1038/s41598-020-73304-9	2020
	Single-cell transcriptomics unveiled that early life BDE-99 exposure reprogrammed the gut-liver axis to promote a proinflammatory metabolic signature in male mice at late adulthood.	Lim JJ, Goedken M, Jin Y, Gu H, Cui JY.	Toxicol Sci	10.1093/toxsci/kfae047	2024
	Opportunistic Infections in HIV-Infected Patients Differ Strongly in Frequencies and Spectra between Patients with Low CD4+ Cell Counts Examined Postmortem and Compensated Patients Examined Antemortem Irrespective of the HAART Era.	Powell MK, Benkova K, Selinger P, Dogosi M, Kinkorova Lunackova I, Koutnikova H, Lastikova J, Roubickova A, Spurkova Z, Laclova L, Eis V, Sach J, Heneberg P.	PLoS One	10.1371/journal.pone.0162704	2016
	Investigation of Acinetobacter baumannii Activity in Vascular Surgery Units through Epidemiological Management Based on the Analysis of Antimicrobial Resistance, Biofilm Formation and Genotyping.	Szczypta A, Talaga-Cwiertnia K, Kielar M, Krzysciak P, Gajewska A, Szura M, Bulanda M, Chmielarczyk A.	Int J Environ Res Public Health	10.3390/ijerph18041563	2021
	Molecular Characterization and Biocompatibility of Exopolysaccharide Produced by Moderately Halophilic Bacterium Virgibacillus dokdonensis from the Saltern of Kumta Coast.	Andrew M, Jayaraman G.	Polymers (Basel)	10.3390/polym14193986	2022
	Biological Control of Bacterial Fruit Blotch of Watermelon Pathogen (Acidovorax citrulli) with Rhizosphere Associated Bacteria.	Adhikari M, Yadav DR, Kim SW, Um YH, Kim HS, Lee SC, Song JY, Kim HG, Lee YS.	Plant Pathol J	10.5423/ppj.oa.09.2016.0187	2017
Metabolism	Environmental fungi and bacteria facilitate lecithin decomposition and the transformation of phosphorus to apatite.	Li C, Li Q, Wang Z, Ji G, Zhao H, Gao F, Su M, Jiao J, Li Z, Li H.	Sci Rep	10.1038/s41598-019-51804-7	2019
Metabolism	Heat stress as an innovative approach to enhance the antioxidant production in Pseudooceanicola and Bacillus isolates.	Hassan AHA, Hozzein WN, Mousa ASM, Rabie W, Alkhalifah DHM, Selim S, AbdElgawad H.	Sci Rep	10.1038/s41598-020-72054-y	2020
	Structural and Mechanistic Insights Into Dimethylsulfoxide Formation Through Dimethylsulfide Oxidation.	Wang XJ, Zhang N, Teng ZJ, Wang P, Zhang WP, Chen XL, Zhang YZ, Chen Y, Fu HH, Li CY.	Front Microbiol	10.3389/fmicb.2021.735793	2021
	An evolutionarily conserved serine protease network mediates melanization and Toll activation in Drosophila.	Shan T, Wang Y, Bhattarai K, Jiang H.	Sci Adv	10.1126/sciadv.adk2756	2023
	Antibacterial activity of essential oils from Australian native plants.	Wilkinson JM, Cavanagh HM.	Phytother Res	10.1002/ptr.1716	2005
Metabolism	Detoxification of lantana hepatotoxin, lantadene A, using Alcaligenes faecalis.	Singh A, Sharma OP, Kurade NP, Ojha S.	J Appl Toxicol	10.1002/jat.746	2001
	Sensing nitrite through a pseudoazurin-nitrite reductase electron transfer relay.	Astier Y, Canters GW, Davis JJ, Hill HA, Verbeet MP, Wijma HJ.	Chemphyschem	10.1002/cphc.200400384	2005
Metabolism	Burkholderia contaminans Biofilm Regulating Operon and Its Distribution in Bacterial Genomes.	Voronina OL, Kunda MS, Ryzhova NN, Aksenova EI, Semenov AN, Romanova YM, Gintsburg AL.	Biomed Res Int	10.1155/2016/6560534	2016
Metabolism	Evaluation of pyrrolidonyl arylamidase for the identification of nonfermenting Gram-negative rods.	Bombicino KA, Almuzara MN, Famiglietti AM, Vay C.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2006.02.012	2007
	Appraisal of diversity and functional attributes of thermotolerant wheat associated bacteria from the peninsular zone of India.	Verma P, Yadav AN, Khannam KS, Mishra S, Kumar S, Kumar S, Saxena AK, Suman A.	Saudi J Biol Sci	10.1016/j.sjbs.2016.01.042	2019
	Production of selenium nanoparticles occurs through an interconnected pathway of sulphur metabolism and oxidative stress response in Pseudomonas putida KT2440.	Avendano R, Munoz-Montero S, Rojas-Gatjens D, Fuentes-Schweizer P, Vieto S, Montenegro R, Salvador M, Frew R, Kim J, Chavarria M, Jimenez JI.	Microb Biotechnol	10.1111/1751-7915.14215	2023
Enzymology	The complex genetic context of blaPER-1 flanked by miniature inverted-repeat transposable elements in Acinetobacter johnsonii.	Zong Z.	PLoS One	10.1371/journal.pone.0090046	2014
	Denitrification by Bradyrhizobia under Feast and Famine and the Role of the bc1 Complex in Securing Electrons for N₂O Reduction.	Gao Y, Overlie Arntzen M, Kjos M, Bakken LR, Frostegard A.	Appl Environ Microbiol	10.1128/aem.01745-22	2023
	Development of Mannose-Modified Carboxylated Curdlan-Coated Liposomes for Antigen Presenting Cell Targeted Antigen Delivery.	Yuba E, Fukaya Y, Yanagihara S, Kasho N, Harada A.	Pharmaceutics	10.3390/pharmaceutics12080754	2020
Enzymology	Outer ear canal infection with Rhabditis sp. nematodes in a human.	Teschner M, Wurfel W, Sedlacek L, Suerbaum S, Tappe D, Hornef MW.	J Clin Microbiol	10.1128/jcm.00115-14	2014
	Three Different Types of beta-Glucans Enhance Cognition: The Role of the Gut-Brain Axis.	Hu M, Zhang P, Wang R, Zhou M, Pang N, Cui X, Ge X, Liu X, Huang XF, Yu Y.	Front Nutr	10.3389/fnut.2022.848930	2022
Pathogenicity	High diversity and abundance of cultivable tetracycline-resistant bacteria in soil following pig manure application.	Kang Y, Li Q, Yin Z, Shen M, Zhao H, Bai Y, Mei L, Hu J.	Sci Rep	10.1038/s41598-018-20050-8	2018
	Locally Delivered Umbilical Cord Mesenchymal Stromal Cells Reduce Chronic Inflammation in Long-Term Nonhealing Wounds: A Randomized Study.	Suzdaltseva Y, Zhidkih S, Kiselev SL, Stupin V.	Stem Cells Int	10.1155/2020/5308609	2020
	Antimicrobial Potential of Microorganisms Isolated from the Bottom Sediments of Lake Baikal.	Babich O, Shevchenko M, Ivanova S, Pavsky V, Zimina M, Noskova S, Anohova V, Chupakhin E, Sukhikh S.	Antibiotics (Basel)	10.3390/antibiotics10080927	2021
Enzymology	The active site of arsenite oxidase from Alcaligenes faecalis.	Conrads T, Hemann C, George GN, Pickering IJ, Prince RC, Hille R.	J Am Chem Soc	10.1021/ja027684q	2002
Pathogenicity	Antifungal activity of Xenorhabdus spp. and Photorhabdus spp. against the soybean pathogenic Sclerotinia sclerotiorum.	Chacon-Orozco JG, Bueno CJ, Shapiro-Ilan DI, Hazir S, Leite LG, Harakava R.	Sci Rep	10.1038/s41598-020-77472-6	2020
Enzymology	L-Glutaminase Synthesis by Marine Halomonas meridiana Isolated from the Red Sea and Its Efficiency against Colorectal Cancer Cell Lines.	Mostafa YS, Alamri SA, Alamri SA, Alfaifi MY, Alrumman SA, Elbehairi SEI, Taha TH, Hashem M.	Molecules	10.3390/molecules26071963	2021
Genetics	Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory.	Paillet T, Lossouarn J, Figueroa C, Midoux C, Rue O, Petit MA, Dugat-Bony E.	Viruses	10.3390/v14081620	2022
	Evaluation of microbiome and physico-chemical profiles of fresh fruits of Musa paradisiaca, Citrus sinensis and Carica papaya at different ripening stages: Implication to quality and safety management.	Kifle DR, Bacha KB, Hora RN, Likasa LL.	PLoS One	10.1371/journal.pone.0297574	2024
	Stenotrophomonas maltophilia endogenous endophthalmitis: clinical presentation, antibiotic susceptibility, and outcomes.	Chhablani J, Sudhalkar A, Jindal A, Das T, Motukupally SR, Sharma S, Pathengay A, Flynn HW.	Clin Ophthalmol	10.2147/opth.s67396	2014
	Growth productivity as a determinant of the inoculum effect for bactericidal antibiotics.	Diaz-Tang G, Meneses EM, Patel K, Mirkin S, Garcia-Dieguez L, Pajon C, Barraza I, Patel V, Ghali H, Tracey AP, Blanar CA, Lopatkin AJ, Smith RP.	Sci Adv	10.1126/sciadv.add0924	2022
Metabolism	[Tn5 mutagenesis and the characteristics of indole-3-acetic acid biosynthesis in Alcaligenes faecalis A1501].	Li F, Ping S, Su B, Lin M.	Wei Sheng Wu Xue Bao		2000
	Novel, acidic, and cold-adapted glycoside hydrolase family 8 endo-beta-1,4-glucanase from an Antarctic lichen-associated bacterium, Lichenicola cladoniae PAMC 26568.	Kim DY, Kim J, Lee YM, Byeon SM, Gwak JH, Lee JS, Shin DH, Park HY.	Front Microbiol	10.3389/fmicb.2022.935497	2022
Pathogenicity	New Determinants of Aminoglycoside Resistance and Their Association with the Class 1 Integron Gene Cassettes in Trueperella pyogenes.	Kwiecien E, Stefanska I, Chrobak-Chmiel D, Salamaszynska-Guz A, Rzewuska M.	Int J Mol Sci	10.3390/ijms21124230	2020
Phylogeny	First record of entomopathogenic nematodes from Yucatán State, México and their infectivity capacity against Aedes aegypti.	Avila-Lopez MB, Garcia-Maldonado JQ, Estrada-Medina H, Hernandez-Mena DI, Cerqueda-Garcia D, Vidal-Martinez VM.	PeerJ	10.7717/peerj.11633	2021
Enzymology	Arsenite oxidation by the heterotroph Hydrogenophaga sp. str. NT-14: the arsenite oxidase and its physiological electron acceptor.	vanden Hoven RN, Santini JM.	Biochim Biophys Acta	10.1016/j.bbabio.2004.03.001	2004
Enzymology	Broad-range PCR, cloning and sequencing of the full 16S rRNA gene for detection of bacterial DNA in synovial fluid samples of Tunisian patients with reactive and undifferentiated arthritis.	Siala M, Gdoura R, Fourati H, Rihl M, Jaulhac B, Younes M, Sibilia J, Baklouti S, Bargaoui N, Sellami S, Sghir A, Hammami A.	Arthritis Res Ther	10.1186/ar2748	2009
Pathogenicity	Dissecting Out the Molecular Mechanism of Insecticidal Activity of Ostreolysin A6/Pleurotolysin B Complexes on Western Corn Rootworm.	Milijas Jotic M, Panevska A, Iacovache I, Kostanjsek R, Mravinec M, Skocaj M, Zuber B, Pavsic A, Razinger J, Modic S, Trenti F, Guella G, Sepcic K.	Toxins (Basel)	10.3390/toxins13070455	2021
	Precipitin response of potato processing workers to work-related microbial allergens.	Dutkiewicz J, Skorska C, Krysinska-Traczyk E, Cholewa G, Sitkowska J, Milanowski J, Gora A.	Ann Agric Environ Med		2002
Metabolism	Comparative Analysis of the Conversion of Mandelonitrile and 2-Phenylpropionitrile by a Large Set of Variants Generated from a Nitrilase Originating from Pseudomonas fluorescens EBC191.	Stolz A, Eppinger E, Sosedov O, Kiziak C.	Molecules	10.3390/molecules24234232	2019
	Distinct Responses of Thitarodes xiaojinensis beta-1,3-Glucan Recognition Protein-1 and Immulectin-8 to Ophiocordyceps sinensis and Cordyceps militaris Infection.	Meng Q, Wu PP, Li MM, Shu RH, Zhou GL, Zhang JH, Zhang H, Jiang H, Qin QL, Zou Z.	J Immunol	10.4049/jimmunol.2000447	2021
Genetics	Putative Mixotrophic Nitrifying-Denitrifying Gammaproteobacteria Implicated in Nitrogen Cycling Within the Ammonia/Oxygen Transition Zone of an Oil Sands Pit Lake.	Mori JF, Chen LX, Jessen GL, Rudderham SB, McBeth JM, Lindsay MBJ, Slater GF, Banfield JF, Warren LA.	Front Microbiol	10.3389/fmicb.2019.02435	2019
Enzymology	Microdiversity of phenol hydroxylase genes among phenol-degrading isolates of Alcaligenes sp. from an activated sludge system.	Zhang X, Gao P, Chao Q, Wang L, Senior E, Zhao L.	FEMS Microbiol Lett	10.1016/j.femsle.2004.06.057	2004
Metabolism	Non-fermenters in human infections.	Arora U, Aggarwal A, Sofat S.	Indian J Pathol Microbiol		2003
	Screening of Fruits of Seven Plants Indicated for Medicinal Use in Iraq.	Aldulaimi O.	Pharmacogn Mag	10.4103/pm.pm_503_16	2017
Metabolism	Biodegradation of Phenol by Bacteria Strain Acinetobacter Calcoaceticus PA Isolated from Phenolic Wastewater.	Liu Z, Xie W, Li D, Peng Y, Li Z, Liu S.	Int J Environ Res Public Health	10.3390/ijerph13030300	2016
Genetics	Genome-based insights into the resistome and mobilome of multidrug-resistant Aeromonas sp. ARM81 isolated from wastewater.	Adamczuk M, Dziewit L.	Arch Microbiol	10.1007/s00203-016-1285-6	2017
Metabolism	Polycyclic aromatic hydrocarbon-degrading bacteria from aviation fuel spill site at Ibeno, Nigeria.	John RC, Essien JP, Akpan SB, Okpokwasili GC.	Bull Environ Contam Toxicol	10.1007/s00128-012-0598-7	2012
Enzymology	Cloning, sequencing and mutagenesis of the genes for aromatic amine dehydrogenase from Alcaligenes faecalis and evolution of amine dehydrogenases.	Chistoserdov AY.	Microbiology (Reading)	10.1099/00221287-147-8-2195	2001
	Bordetella pertussis whole cell immunization protects against Pseudomonas aeruginosa infections.	Blackwood CB, Mateu-Borras M, Sen-Kilic E, Pyles GM, Miller SJ, Weaver KL, Witt WT, Huckaby AB, Kang J, Chandler CE, Ernst RK, Heath Damron F, Barbier M.	NPJ Vaccines	10.1038/s41541-022-00562-1	2022
	Rodent Models of Spondyloarthritis Have Decreased White and Bone Marrow Adipose Tissue Depots.	Furesi G, Fert I, Beaufrere M, Araujo LM, Glatigny S, Baschant U, von Bonin M, Hofbauer LC, Horwood NJ, Breban M, Rauner M, Rauner M.	Front Immunol	10.3389/fimmu.2021.665208	2021
Metabolism	Pro-sequence and Ca2+-binding: implications for folding and maturation of Ntn-hydrolase penicillin amidase from E. coli.	Ignatova Z, Wischnewski F, Notbohm H, Kasche V.	J Mol Biol	10.1016/j.jmb.2005.03.005	2005
	Anisotropic presentation of ligands on cargos modulates degradative function of phagosomes.	Jiao M, Li W, Yu Y, Yu Y.	Biophys Rep (N Y)	10.1016/j.bpr.2021.100041	2022
	Crystal structure of the 100 kDa arsenite oxidase from Alcaligenes faecalis in two crystal forms at 1.64 A and 2.03 A.	Ellis PJ, Conrads T, Hille R, Kuhn P.	Structure	10.1016/s0969-2126(01)00566-4	2001
Phylogeny	First case of invasive human infection caused by Cupriavidus metallidurans.	Langevin S, Vincelette J, Bekal S, Gaudreau C.	J Clin Microbiol	10.1128/jcm.01947-10	2011
	Identifying different types of microorganisms with terahertz spectroscopy.	Yoon SA, Cha SH, Jun SW, Park SJ, Park JY, Lee S, Kim HS, Ahn YH.	Biomed Opt Express	10.1364/boe.376584	2020
	First European Erwinia amylovora Lytic Bacteriophage Cocktails Effective in the Host: Characterization and Prospects for Fire Blight Biocontrol.	Biosca EG, Delgado Santander R, Moran F, Figas-Segura A, Vazquez R, Catala-Senent JF, Alvarez B.	Biology (Basel)	10.3390/biology13030176	2024
Metabolism	Phe-140 Determines the Catalytic Efficiency of Arylacetonitrilase from Alcaligenes faecalis.	Kim JS, Patel SKS, Tiwari MK, Lai C, Kumar A, Kim YS, Kalia VC, Lee JK	Int J Mol Sci	10.3390/ijms21217859	2020
	Bacillus subtilis TR47II as a source of bioactive lipopeptides against Gram-negative pathogens causing nosocomial infections.	de Souza Freitas F, Coelho de Assis Lage T, Ayupe BAL, de Paula Siqueira T, de Barros M, Totola MR	3 Biotech	10.1007/s13205-020-02459-z	2020
Enzymology	Imidase catalyzing desymmetric imide hydrolysis forming optically active 3-substituted glutaric acid monoamides for the synthesis of gamma-aminobutyric acid (GABA) analogs.	Nojiri M, Hibi M, Shizawa H, Horinouchi N, Yasohara Y, Takahashi S, Ogawa J	Appl Microbiol Biotechnol	10.1007/s00253-015-6812-x	2015
Metabolism	Light controlled reversible inversion of nanophosphor-stabilized Pickering emulsions for biphasic enantioselective biocatalysis.	Chen Z, Zhou L, Bing W, Zhang Z, Li Z, Ren J, Qu X	J Am Chem Soc	10.1021/ja503123m	2014
Phylogeny	Characterization of Alcaligenes faecalis strain AD15 indicating biocontrol activity against plant pathogens.	Yokoyama S, Adachi Y, Asakura S, Kohyama E	J Gen Appl Microbiol	10.2323/jgam.59.089	2013
Metabolism	Identification of amino acid residues responsible for the enantioselectivity and amide formation capacity of the Arylacetonitrilase from Pseudomonas fluorescens EBC191.	Kiziak C, Stolz A	Appl Environ Microbiol	10.1128/AEM.00301-09	2009
Enzymology	Influence of different carboxy-terminal mutations on the substrate-, reaction- and enantiospecificity of the arylacetonitrilase from Pseudomonas fluorescens EBC191.	Kiziak C, Klein J, Stolz A	Protein Eng Des Sel	10.1093/protein/gzm032	2007
Enzymology	Hydrolysis of nitriles using an immobilized nitrilase: applications to the synthesis of methionine hydroxy analogue derivatives.	Rey P, Rossi JC, Taillades J, Gros G, Nore O	J Agric Food Chem	10.1021/jf048827q	2004
Enzymology	Analysis of oxidation sensitivity of maleate cis-trans isomerase from Serratia marcescens.	Hatakeyama K, Goto M, Kobayashi M, Terasawa M, Yukawa H	Biosci Biotechnol Biochem	10.1271/bbb.64.1477	2000
Enzymology	Molecular analysis of maleate cis-trans isomerase from thermophilic bacteria.	Hatakeyama K, Goto M, Uchida Y, Kobayashi M, Terasawa M, Yukawa H	Biosci Biotechnol Biochem	10.1271/bbb.64.569	2000
Enzymology	Gene cloning and characterization of maleate cis-trans isomerase from Alcaligenes faecalis.	Hatakeyama K, Asai Y, Uchida Y, Kobayashi M, Terasawa M, Yukawa H	Biochem Biophys Res Commun	10.1006/bbrc.1997.7430	1997
Metabolism	Production of R-(-)-mandelic acid from mandelonitrile by Alcaligenes faecalis ATCC 8750.	Yamamoto K, Oishi K, Fujimatsu I, Komatsu K	Appl Environ Microbiol	10.1128/aem.57.10.3028-3032.1991	1991
Metabolism	An examination of proton translocation and energy conservation during heterotrophic nitrification.	Castignetti D, Palutsis D, Turley J	FEMS Microbiol Lett	10.1016/0378-1097(90)90278-x	1990
Metabolism	Heterotrophic nitrification by Alcaligenes faecalis: NO2-, NO3-, N2O, and NO production in exponentially growing cultures.	Papen H, von Berg R, Hinkel I, Thoene B, Rennenberg H	Appl Environ Microbiol	10.1128/aem.55.8.2068-2072.1989	1989
Enzymology	A comparative study of the resonance Raman spectra of bacterial cytochromes.	Lewis MA, Timkovich R, Cotton TM	Arch Biochem Biophys	10.1016/0003-9861(85)90654-x	1985
Enzymology	Proton NMR spectroscopy of Alcaligenes cytochrome c556.	Timkovich R, Cork MS, Taylor PV	J Inorg Biochem	10.1016/0162-0134(84)85060-6	1984
Metabolism	Proton NMR spectroscopy of cytochrome c-554 from Alcaligenes faecalis.	Timkovich R, Cork MS	Biochemistry	10.1021/bi00300a010	1984
Biotechnology	Production of cephalosporin C by Paecilomyces persicinus P-10.	Pisano MA, Vellozzi EM	Antimicrob Agents Chemother	10.1128/AAC.6.4.447	1974
Phylogeny	Bordetella holmesii sp. nov., a new gram-negative species associated with septicemia.	Weyant RS, Hollis DG, Weaver RE, Amin MF, Steigerwalt AG, O'Connor SP, Whitney AM, Daneshvar MI, Moss CW, Brenner DJ.	J Clin Microbiol	10.1128/jcm.33.1.1-7.1995	1995
Phylogeny	Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae.	Kampfer P, Falsen E, Langer S, Lodders N, Busse HJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.016576-0	2010
Phylogeny	Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Rüger and Tan 1983 as Achromobacter denitrificans comb. nov.	Coenye T, Vancanneyt M, Cnockaert MC, Falsen E, Swings J, Vandamme P.	Int J Syst Evol Microbiol	10.1099/ijs.0.02609-0	2003
Phylogeny	Castellaniella gen. nov., to accommodate the phylogenetic lineage of Alcaligenes defragrans, and proposal of Castellaniella defragrans gen. nov., comb. nov. and Castellaniella denitrificans sp. nov.	Kampfer P, Denger K, Cook AM, Lee ST, Jackel U, Denner EBM, Busse HJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.63989-0	2006
Phylogeny	Alcaligenes aquatilis sp. nov., a novel bacterium from sediments of the Weser Estuary, Germany, and a salt marsh on Shem Creek in Charleston Harbor, USA.	Van Trappen S, Tan TL, Samyn E, Vandamme P.	Int J Syst Evol Microbiol	10.1099/ijs.0.63849-0	2005
Phylogeny	Paenalcaligenes suwonensis sp. nov., isolated from spent mushroom compost.	Moon JY, Lim JM, Ahn JH, Weon HY, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.058412-0	2013
Phylogeny	Tetrathiobacter mimigardefordensis sp. nov., isolated from compost, a betaproteobacterium capable of utilizing the organic disulfide 3,3'-dithiodipropionic acid.	Wubbeler JH, Lutke-Eversloh T, Van Trappen S, Vandamme P, Steinbuchel A	Int J Syst Evol Microbiol	10.1099/ijs.0.64126-0	2006
Phylogeny	Alcaligenes faecalis subsp. phenolicus subsp. nov. a phenol-degrading, denitrifying bacterium isolated from a graywater bioprocessor.	Rehfuss M, Urban J	Syst Appl Microbiol	10.1016/j.syapm.2005.03.003	2005
Metabolism	Alcaligenes faecalis subsp. parafaecalis subsp. nov., a bacterium accumulating poly-beta-hydroxybutyrate from acetone-butanol bioprocess residues.	Schroll G, Busse HJ, Parrer G, Rolleke S, Lubitz W, Denner EB	Syst Appl Microbiol	10.1078/0723-2020-00001	2001

References

#9092	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30030
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33018	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119164	Collection of Institut Pasteur ; Curators of the CIP; CIP 60.80
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alcaligenes faecalis subsp. faecalis (DSM 30030, ATCC 8750, CCM 1052)

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