Strain identifier

BacDive ID: 327

Type strain: Yes

Species: Alcaligenes faecalis

Strain Designation: 16 (R. Hugh 135), 135, 16

Strain history: CIP <- 1960, R. Hugh: strain 135 <- H.J. Conn: strain 16

NCBI tax ID(s): 1218102 (strain), 511 (species)

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General

@ref: 9092

BacDive-ID: 327

DSM-Number: 30030

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile, human pathogen

description: Alcaligenes faecalis 16 is an obligate aerobe, mesophilic, motile human pathogen that was isolated from Unknown source.

NCBI tax id

NCBI tax idMatching level
511species
1218102strain

strain history

@refhistory
9092<- ATCC <- H.J. Conn, 16 (R. Hugh, 135)
67770IAM 12369 <-- ATCC 8750 <-- H. J. Conn 16.
119164CIP <- 1960, R. Hugh: strain 135 <- H.J. Conn: strain 16

doi: 10.13145/bacdive327.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Alcaligenes
  • species: Alcaligenes faecalis
  • full scientific name: Alcaligenes faecalis Castellani and Chalmers 1919 (Approved Lists 1980)

@ref: 9092

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Alcaligenes

species: Alcaligenes faecalis subsp. faecalis

full scientific name: Alcaligenes faecalis subsp. faecalis (Castellani and Chalmers 1919) Austin et al. 1981

strain designation: 16 (R. Hugh 135), 135, 16

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes96.113
6948099.998negative
119164nonegativerod-shaped

colony morphology

  • @ref: 9092
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9092COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9092TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
33018MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
68368MacConkey mediumyes
119164CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
9092positivegrowth30mesophilic
33018positivegrowth30mesophilic
67770positivegrowth30mesophilic
119164positivegrowth5-41
119164nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119164
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.995

halophily

@refsaltgrowthtested relationconcentration
119164NaClpositivegrowth0-6 %
119164NaClnogrowth8 %
119164NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
6836817632nitrate-reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
11916416947citrate+carbon source
1191644853esculin-hydrolysis
119164606565hippurate+hydrolysis
11916417632nitrate-builds gas from
11916417632nitrate-reduction
11916416301nitrite+builds gas from
11916416301nitrite+reduction
11916415792malonate+assimilation
11916417632nitrate-respiration

antibiotic resistance

  • @ref: 119164
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
11916435581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
6836815688acetoin+
6836835581indole-
11916415688acetoin-
11916417234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68368gelatinase-
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
119164oxidase+
119164beta-galactosidase-3.2.1.23
119164alcohol dehydrogenase-1.1.1.1
119164gelatinase-
119164amylase-
119164DNase-
119164caseinase-3.4.21.50
119164catalase+1.11.1.6
119164tween esterase-
119164gamma-glutamyltransferase+2.3.2.2
119164lecithinase-
119164lipase-
119164lysine decarboxylase-4.1.1.18
119164ornithine decarboxylase-4.1.1.17
119164phenylalanine ammonia-lyase-4.3.1.24
119164tryptophan deaminase+
119164urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119164-+++-+----++--------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2MACOF-OOF-F
9092----+----+-------------
9092----+----+----------+
9092----+--+/--+----------+--+--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
9092---------------+-++++
9092---------------+-+++-
9092---------------+-+++
9092---------------+-++++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119164-------------------------------------------------++--+-------+-----++------++-+++----+--++++++-++++

Isolation, sampling and environmental information

isolation

  • @ref: 119164
  • sample type: Unknown source
  • isolation date: 1942

taxonmaps

  • @ref: 69479
  • File name: preview.99_1570.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_894;97_1043;98_1238;99_1570&stattab=map
  • Last taxonomy: Alcaligenes
  • 16S sequence: D88008
  • Sequence Identity:
  • Total samples: 4902
  • soil counts: 516
  • aquatic counts: 1182
  • animal counts: 2918
  • plant counts: 286

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
9092yesyes2Risk group (German classification)
1191641Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Alcaligenes faecalis subsp. faecalis gene for 16S rRNA, partial sequence, strain: NBRC 13111AB6803681462ena32001
20218A.faecalis 16S ribosomal RNA, complete cdsM225081476ena511
9092Alcaligenes faecalis gene for 16S ribosomal RNAD880081470ena511

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alcaligenes faecalis DSM 30030GCA_002443155completencbi511
66792Achromobacter sp. strain ATCC8750134375.5wgspatric134375
66792Alcaligenes faecalis strain DSM 30030511.55completepatric511
66792Alcaligenes faecalis subsp. faecalis NBRC 131111218102.4wgspatric1218102
66792Alcaligenes faecalis subsp. faecalis NBRC 131111218102.3wgspatric1218102
66792Alcaligenes faecalis ATCC 87502690316351draftimg511
66792Alcaligenes faecalis faecalis NBRC 131112600255060draftimg1218102
66792Alcaligenes faecalis DSM 300302846866227completeimg511
67770Alcaligenes faecalis subsp. faecalis NBRC 13111GCA_000739855contigncbi1218102
67770Alcaligenes faecalis subsp. faecalis NBRC 13111GCA_001748345contigncbi1218102
67770Alcaligenes faecalis ATCC 8750GCA_001298815scaffoldncbi511
66792Alcaligenes faecalis DSM 30030GCA_026344095contigncbi511

GC content

@refGC-contentmethod
909254.8
6777057.1-58.1thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes53.295no
gram-positiveno98.353no
anaerobicno98.553no
aerobicyes89.704no
halophileno85.24no
spore-formingno95.495no
thermophileno98.375yes
glucose-utilno80.064no
motileyes85.516no
glucose-fermentno89.732yes

External links

@ref: 9092

culture collection no.: DSM 30030, ATCC 8750, CCM 1052, CIP 60.80, IFO 13111, NBRC 13111, NCDO 868, NCIB 8156, CCUG 1814, NCTC 11953, LMG 1229, JCM 20522, BCRC 10828, CCUG 1325, CECT 928, CGMCC 1.1786, HAMBI 1907, IAM 12369, IAM 12586, JCM 1474, JCM 20663, KCTC 2678, LMG 2100, LMG 3366, LMG 3369, LMG 3371, NCAIM B.01104, NCAIM B.02076, NCIMB 8156, VKM B-1518, VTT E-97056, IMET 10443, NBIMCC 153, CIP 55.84

straininfo link

  • @ref: 70008
  • straininfo: 92102

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism1660699Production of R-(-)-mandelic acid from mandelonitrile by Alcaligenes faecalis ATCC 8750.Yamamoto K, Oishi K, Fujimatsu I, Komatsu KAppl Environ Microbiol10.1128/aem.57.10.3028-3032.19911991Acetonitriles/*metabolism, Alcaligenes/enzymology/*growth & development/metabolism, Amidohydrolases/metabolism, Benzaldehydes/metabolism, Carbon/pharmacology, Hydrogen Cyanide/metabolism, Hydrolysis, Isomerism, Kinetics, Mandelic Acids/*metabolism, Substrate SpecificityEnzymology
Metabolism2157622An examination of proton translocation and energy conservation during heterotrophic nitrification.Castignetti D, Palutsis D, Turley JFEMS Microbiol Lett10.1016/0378-1097(90)90278-x1990Alcaligenes/metabolism, Arthrobacter/metabolism, Bacteria/*metabolism, Energy Metabolism, Hydroxylamine, Hydroxylamines/metabolism, Nitrogen/*metabolism, Oxidation-Reduction, Propionates/metabolism, Protons, Pseudomonas/metabolism, Pseudomonas fluorescens/metabolism
Metabolism2782877Heterotrophic nitrification by Alcaligenes faecalis: NO2-, NO3-, N2O, and NO production in exponentially growing cultures.Papen H, von Berg R, Hinkel I, Thoene B, Rennenberg HAppl Environ Microbiol10.1128/aem.55.8.2068-2072.19891989Aerobiosis, Alcaligenes/growth & development/*metabolism, Ammonium Chloride/metabolism, Citrates/metabolism, Culture Media, Hydrogen-Ion Concentration, Nitric Oxide/metabolism, Nitrites/metabolism, Nitrogen Oxides/*metabolism, Nitrous Oxide/metabolismCultivation
Enzymology2982314A comparative study of the resonance Raman spectra of bacterial cytochromes.Lewis MA, Timkovich R, Cotton TMArch Biochem Biophys10.1016/0003-9861(85)90654-x1985Alcaligenes/enzymology, Animals, Bacteria/*enzymology, *Bacterial Proteins, Chemical Phenomena, Chemistry, Cytochrome c Group/analysis, Cytochromes/*analysis, Heme/analysis, Horses, Magnetic Resonance Spectroscopy, Paracoccus denitrificans/enzymology, Pseudomonas aeruginosa/enzymology, Species Specificity, Spectrum Analysis, RamanPhylogeny
Biotechnology4157343Production of cephalosporin C by Paecilomyces persicinus P-10.Pisano MA, Vellozzi EMAntimicrob Agents Chemother10.1128/AAC.6.4.4471974Cephalosporins/analysis/*biosynthesis, Fermentation, Paecilomyces/*metabolismMetabolism
Enzymology6092534Proton NMR spectroscopy of Alcaligenes cytochrome c556.Timkovich R, Cork MS, Taylor PVJ Inorg Biochem10.1016/0162-0134(84)85060-61984Alcaligenes/*analysis, *Cytochrome c Group/isolation & purification, Ferric Compounds, Ferrous Compounds, Hydrogen-Ion Concentration, *Magnetic Resonance Spectroscopy, Molecular Weight, Oxidation-Reduction, SpectrophotometryPhylogeny
Metabolism6324856Proton NMR spectroscopy of cytochrome c-554 from Alcaligenes faecalis.Timkovich R, Cork MSBiochemistry10.1021/bi00300a0101984Alcaligenes/*metabolism, Cytochrome c Group/*metabolism, Electron Transport, Hydrogen-Ion Concentration, Kinetics, Magnetic Resonance Spectroscopy, ThermodynamicsEnzymology
Enzymology9345272Gene cloning and characterization of maleate cis-trans isomerase from Alcaligenes faecalis.Hatakeyama K, Asai Y, Uchida Y, Kobayashi M, Terasawa M, Yukawa HBiochem Biophys Res Commun10.1006/bbrc.1997.74301997Alcaligenes/*enzymology, Amino Acid Sequence, *Bacterial Proteins, Base Sequence, Catalysis, Cloning, Molecular, DNA, Bacterial, Hydrogen-Ion Concentration, Isomerism, Kinetics, Molecular Sequence Data, Molecular Weight, Temperature, cis-trans-Isomerases/*metabolismGenetics
Enzymology10803955Molecular analysis of maleate cis-trans isomerase from thermophilic bacteria.Hatakeyama K, Goto M, Uchida Y, Kobayashi M, Terasawa M, Yukawa HBiosci Biotechnol Biochem10.1271/bbb.64.5692000Alcaligenes/enzymology, Amino Acid Sequence, Bacillus/classification/enzymology/isolation & purification, *Bacterial Proteins, Base Sequence, Cloning, Molecular, DNA, Bacterial, Enzyme Activation, Enzyme Stability, Genes, Bacterial, Geobacillus stearothermophilus/classification/*enzymology/isolation & purification, Maleates/metabolism, Molecular Sequence Data, Molecular Weight, Mutagenesis, Sequence Alignment, Temperature, cis-trans-Isomerases/*genetics/metabolismPhylogeny
Enzymology10945267Analysis of oxidation sensitivity of maleate cis-trans isomerase from Serratia marcescens.Hatakeyama K, Goto M, Kobayashi M, Terasawa M, Yukawa HBiosci Biotechnol Biochem10.1271/bbb.64.14772000Amino Acid Sequence, Aspartic Acid, *Bacterial Proteins, Base Sequence, DNA, Bacterial, Enzyme Inhibitors, Enzyme Stability, Escherichia coli, Gene Expression, Genes, Bacterial, Hydrogen Peroxide/metabolism, Molecular Sequence Data, Oxidation-Reduction, Recombinant Fusion Proteins/antagonists & inhibitors/genetics/isolation & purification/metabolism, Sequence Homology, Amino Acid, Serratia marcescens/*enzymology/genetics, Temperature, cis-trans-Isomerases/antagonists & inhibitors/genetics/isolation & purification/*metabolismMetabolism
Metabolism11403397Alcaligenes faecalis subsp. parafaecalis subsp. nov., a bacterium accumulating poly-beta-hydroxybutyrate from acetone-butanol bioprocess residues.Schroll G, Busse HJ, Parrer G, Rolleke S, Lubitz W, Denner EBSyst Appl Microbiol10.1078/0723-2020-000012001Acetone/*metabolism, Alcaligenes/*classification/*metabolism, Bacterial Typing Techniques, Butanols/*metabolism, DNA, Ribosomal/genetics, Fermentation, Hydroxybutyrates/*metabolism, Industrial Microbiology/methods, Molecular Sequence Data, Polyesters/*metabolism, RNA, Ribosomal, 16S/geneticsPhylogeny
Enzymology15612811Hydrolysis of nitriles using an immobilized nitrilase: applications to the synthesis of methionine hydroxy analogue derivatives.Rey P, Rossi JC, Taillades J, Gros G, Nore OJ Agric Food Chem10.1021/jf048827q2004Alcaligenes faecalis/enzymology, Aminohydrolases/*metabolism, Enzymes, Immobilized, Hydrolysis, Hydroxylation, Kinetics, Methionine/*analogs & derivatives, Nitriles/*metabolismMetabolism
Phylogeny16094869Alcaligenes faecalis subsp. phenolicus subsp. nov. a phenol-degrading, denitrifying bacterium isolated from a graywater bioprocessor.Rehfuss M, Urban JSyst Appl Microbiol10.1016/j.syapm.2005.03.0032005Alcaligenes faecalis/*classification/genetics/isolation & purification/metabolism, Bacterial Typing Techniques, Biodegradation, Environmental, Bioreactors, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Mixed Function Oxygenases/genetics/metabolism, Molecular Sequence Data, Nitrite Reductases/genetics/metabolism, Nitrites/*metabolism, Phenol/*metabolism, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Waste Disposal, Fluid/*methods, *Water Microbiology, Water Pollutants, Chemical/*metabolismMetabolism
Phylogeny16738107Tetrathiobacter mimigardefordensis sp. nov., isolated from compost, a betaproteobacterium capable of utilizing the organic disulfide 3,3'-dithiodipropionic acid.Wubbeler JH, Lutke-Eversloh T, Van Trappen S, Vandamme P, Steinbuchel AInt J Syst Evol Microbiol10.1099/ijs.0.64126-02006Alcaligenaceae/*classification/isolation & purification, Base Composition, Betaproteobacteria/*classification/genetics/isolation & purification/metabolism, DNA, Bacterial/genetics, Disulfides/metabolism, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/geneticsEnzymology
Enzymology17693456Influence of different carboxy-terminal mutations on the substrate-, reaction- and enantiospecificity of the arylacetonitrilase from Pseudomonas fluorescens EBC191.Kiziak C, Klein J, Stolz AProtein Eng Des Sel10.1093/protein/gzm0322007Amino Acid Motifs, Amino Acid Sequence, Amino Acid Substitution, *Aminohydrolases/chemistry/genetics/metabolism, Base Sequence, Binding Sites, Catalysis, DNA, Bacterial/chemistry/genetics/isolation & purification, Dimerization, Enzyme Stability, Escherichia coli/genetics, Freezing, Hydrogen Bonding, Kinetics, Molecular Sequence Data, *Mutation, Protein Binding, Protein Structure, Secondary, Pseudomonas fluorescens/*enzymology, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Stereoisomerism, Substrate SpecificityGenetics
Metabolism19581475Identification of amino acid residues responsible for the enantioselectivity and amide formation capacity of the Arylacetonitrilase from Pseudomonas fluorescens EBC191.Kiziak C, Stolz AAppl Environ Microbiol10.1128/AEM.00301-092009Acetonitriles/metabolism, Alcaligenes faecalis/enzymology, Amino Acid Substitution, Aminohydrolases/*genetics/*metabolism, Catalytic Domain/*genetics, Mandelic Acids/metabolism, Mutagenesis, Site-Directed, Pseudomonas fluorescens/*enzymology, Recombinant Fusion Proteins/genetics/metabolism, Stereoisomerism, Substrate SpecificityEnzymology
Phylogeny23759862Characterization of Alcaligenes faecalis strain AD15 indicating biocontrol activity against plant pathogens.Yokoyama S, Adachi Y, Asakura S, Kohyama EJ Gen Appl Microbiol10.2323/jgam.59.0892013Alcaligenes faecalis/*classification/genetics/isolation & purification/*physiology, Anti-Infective Agents/*metabolism, *Antibiosis, Bacterial Typing Techniques, Cluster Analysis, Colletotrichum/drug effects, Cyclamen/*microbiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydroxylamine/*metabolism, Japan, Microscopy, Atomic Force, Molecular Sequence Data, Pantoea/drug effects, Pest Control, Biological/methods, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyMetabolism
Phylogeny24271214Paenalcaligenes suwonensis sp. nov., isolated from spent mushroom compost.Moon JY, Lim JM, Ahn JH, Weon HY, Kwon SW, Kim SJInt J Syst Evol Microbiol10.1099/ijs.0.058412-02013*Agaricales, Alcaligenaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, Polyamines/chemistry, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics
Metabolism24784766Light controlled reversible inversion of nanophosphor-stabilized Pickering emulsions for biphasic enantioselective biocatalysis.Chen Z, Zhou L, Bing W, Zhang Z, Li Z, Ren J, Qu XJ Am Chem Soc10.1021/ja503123m2014Alcaligenes faecalis/*metabolism, Benzopyrans/chemistry/*metabolism, Biocatalysis, Emulsions/chemistry, Indoles/chemistry/*metabolism, *Light, Models, Molecular, Nanoparticles/*chemistry, Nitro Compounds/chemistry/*metabolism, Particle Size, Stereoisomerism, Surface Properties
Enzymology26205522Imidase catalyzing desymmetric imide hydrolysis forming optically active 3-substituted glutaric acid monoamides for the synthesis of gamma-aminobutyric acid (GABA) analogs.Nojiri M, Hibi M, Shizawa H, Horinouchi N, Yasohara Y, Takahashi S, Ogawa JAppl Microbiol Biotechnol10.1007/s00253-015-6812-x2015Alcaligenes faecalis/*enzymology, Amidohydrolases/chemistry/genetics/isolation & purification/*metabolism, Burkholderiaceae/*enzymology, Enzyme Stability, Glutarates/*metabolism, Hydrogen-Ion Concentration, Hydrolysis, Imides/*metabolism, Recombinant Proteins/chemistry/genetics/isolation & purification/*metabolism, Sequence Homology, Amino Acid, Temperature, gamma-Aminobutyric Acid/metabolismMetabolism
33072469Bacillus subtilis TR47II as a source of bioactive lipopeptides against Gram-negative pathogens causing nosocomial infections.de Souza Freitas F, Coelho de Assis Lage T, Ayupe BAL, de Paula Siqueira T, de Barros M, Totola MR3 Biotech10.1007/s13205-020-02459-z2020
Metabolism33113984Phe-140 Determines the Catalytic Efficiency of Arylacetonitrilase from Alcaligenes faecalis.Kim JS, Patel SKS, Tiwari MK, Lai C, Kumar A, Kim YS, Kalia VC, Lee JKInt J Mol Sci10.3390/ijms212178592020Acetonitriles/metabolism, Alcaligenes faecalis/*enzymology/genetics, Amino Acid Sequence, Amino Acid Substitution, Aminohydrolases/*chemistry/genetics/*metabolism, Bacterial Proteins/chemistry/genetics/metabolism, Catalytic Domain, Hydrophobic and Hydrophilic Interactions, Models, Molecular, Mutation, Phenylalanine/*metabolism, Protein ConformationEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9092Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30030)https://www.dsmz.de/collection/catalogue/details/culture/DSM-30030
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33018Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9900
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70008Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92102.1StrainInfo: A central database for resolving microbial strain identifiers
119164Curators of the CIPCollection of Institut Pasteur (CIP 60.80)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2060.80