Name: Corynebacterium atypicum R2070
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3213

Type strain:

Species: Corynebacterium atypicum

Strain Designation: R2070

Culture col. no.: DSM 44849, CCUG 45804, CIP 107431, JCM 12368

Strain history: CIP <- 2002, CCUG <- V. Hall, PHLS, Cardiff, UK: strain R2070

NCBI tax ID(s): 191610 (species)

SI-ID 100281

CCUG 45804, CIP 107431, DSM 44849, JCM 12368

Section

Corynebacterium atypicum R2070 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from human clinical specimen.

Gram-positive
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium atypicum**
	Full Scientific Name (LPSN)	Corynebacterium atypicum Hall et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #23198]	Gram stain	positive
[Ref.: #116548]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23198]	Cell shape	rod-shaped
[Ref.: #116548]	Cell shape	rod-shaped

[Ref.: #23198]	Motility	no
[Ref.: #116548]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.06

[Ref.: #23198]	Type of hemolysis	gamma
[Ref.: #23198]	Colony color	white
[Ref.: #23198]	Incubation period	2 days
[Ref.: #23198]	Cultivation medium used	Columbia agar with 5 % horse blood

[Ref.: #116548]	Hemolysis ability	1

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12030]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #12030]

Culture medium growth

[Ref.: #12030]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12030]

Culture medium composition

expand / minimize

[Ref.: #23198]

Culture medium

Columbia agar with 5 % horse blood

[Ref.: #23198]

Culture medium growth

[Ref.: #33793]

Culture medium

MEDIUM 355 - for Corynebacterium genitalium

[Ref.: #33793]

Culture medium growth

[Ref.: #33793]

Culture medium composition

expand / minimize

[Ref.: #116548]

Culture medium

CIP Medium 355

[Ref.: #116548]

Culture medium growth

[Ref.: #116548]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #12030]		growth	37 °C
[Ref.: #23198]		growth	37 °C
[Ref.: #33793]		growth	37 °C
[Ref.: #56929]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #116548]		growth	25-37 °C
[Ref.: #116548]	no	growth	10 °C
[Ref.: #116548]	no	growth	41 °C
[Ref.: #116548]	no	growth	45 °C

[Ref.: #12030]	Temperature range	mesophilic
[Ref.: #23198]	Temperature range	mesophilic
[Ref.: #33793]	Temperature range	mesophilic
[Ref.: #56929]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116548]	Temperature range	mesophilic
[Ref.: #116548]	Temperature range	psychrophilic
[Ref.: #116548]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23198]	Oxygen tolerance	facultative anaerobe
[Ref.: #56929]	Oxygen tolerance	microaerophile
[Ref.: #116548]	Oxygen tolerance	facultative anaerobe

[Ref.: #23198]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Salt	Tested relation		Salt conc.
[Ref.: #23198]	NaCl		growth	7.5	%
[Ref.: #23198]	NaCl	no	growth	10	%
[Ref.: #116548]	NaCl		growth	2-8	%
[Ref.: #116548]	NaCl	no	growth	0	%
[Ref.: #116548]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	D-glucose ChEBI	+	builds acid from
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	D-xylose ChEBI	-	builds acid from
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	esculin ChEBI	-	hydrolysis
[Ref.: #116548]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	gelatin ChEBI	-	hydrolysis
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	glycogen ChEBI	-	builds acid from
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116548]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	maltose ChEBI	+	builds acid from
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	mannitol ChEBI	-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	nitrate ChEBI	-	reduction
[Ref.: #116548]	nitrate ChEBI	-	reduction
[Ref.: #116548]	nitrate ChEBI	+	respiration
[Ref.: #116548]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116548]	pyrazinamide ChEBI	-	hydrolysis
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	ribose ChEBI	+	builds acid from
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	starch ChEBI	-	hydrolysis
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23198]	sucrose ChEBI	+	builds acid from
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116548]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #23198]		acetoin ChEBI	no
[Ref.: #116548]		indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #23198]	acetoin ChEBI	-
[Ref.: #116548]	acetoin ChEBI	-
[Ref.: #116548]	glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #23198]	acid phosphatase	-	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #116548]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #23198]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #23198]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #23198]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #23198]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #23198]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #23198]	beta-galactosidase	-	3.2.1.23
[Ref.: #116548]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #23198]	beta-glucosidase	-	3.2.1.21
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #23198]	beta-glucuronidase	+	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #23198]	catalase	+	1.11.1.6
[Ref.: #116548]	catalase	+	1.11.1.6
[Ref.: #23198]	chymotrypsin	-	3.4.4.5
[Ref.: #23198]	cystine arylamidase	+	3.4.11.3
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23198]	esterase (C 4)	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #23198]	esterase lipase (C 8)	-
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #116548]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #116548]	gelatinase	-
[Ref.: #23198]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #23198]	lipase (C 14)	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116548]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23198]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #116548]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116548]	oxidase	-
[Ref.: #116548]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #23198]	phosphoamidase	-	3.9.1.1
[Ref.: #23198]	pyrazinamidase	-	3.5.1.B15
[Ref.: #23198]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #23198]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116548]	tryptophan deaminase	-
[Ref.: #23198]	urease	-	3.5.1.5
[Ref.: #116548]	urease	-	3.5.1.5
[Ref.: #23198]	valine arylamidase	+
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #116548]	10963	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116548]	2208	not determinedn.d.	+	+	+	+	+	-	-	+	+	+	+	+	-	-	-	+	+	+	-	-	-	+	+	-	-	-	-	+	-	-	-	+	-	-	+	-	+	+	+	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	-	+	+	+	+	+	-	-	-	-	+	+	+	+	+	+	-	-	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116548]	10346	-	-	-	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12030]	Sample type/isolated from	human clinical specimen
[Ref.: #12030]	Geographic location (country and/or sea, region)	Cardiff
[Ref.: #12030]	Country	United Kingdom
[Ref.: #12030]	Country ISO 3 Code	GBR
[Ref.: #12030]	Continent	Europe

[Ref.: #56929]	Sample type/isolated from	Human clinical specimen,no further information
[Ref.: #56929]	Geographic location (country and/or sea, region)	Cardiff
[Ref.: #56929]	Country	United Kingdom
[Ref.: #56929]	Country ISO 3 Code	GBR
[Ref.: #56929]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Unknown human clinical source

[Ref.: #116548]	Sample type/isolated from	Human
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Infection	#Patient	-
#Infection	#Medical environment	#Clinic
#Infection	#Patient	#Specimen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ441057 (>99% sequence identity) for Corynebacterium atypicum subclade from Microbeatlas

Aquatic Samples	301
Soil Samples	268
Animal Samples	6449
Plant Samples	35
Total Samples	7053

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12030]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116548]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23198]	Corynebacterium atypicalis 16S rRNA gene, type strain R10176	AJ441057	1482	GenBank	191610 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corynebacterium atypicum R2070	GCA_000732945	complete	GenBank	191610 tax ID	*
[Ref.: #66792]	Corynebacterium atypicum strain R2070	191610.5	plasmid	PATRIC	191610 tax ID	*
[Ref.: #66792]	Corynebacterium atypicum R2070	2585427661	complete	JGI IMG/M	191610 tax ID	*

[Ref.: #67770]	GC-content	65.4 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	65.51 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Corynebacterium atypicum R2070 NCBI: GCA_000732945.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium atypicum R2070 NCBI: GCA_000732945.1
[Ref.: #69480]	motile	no	95.203	yes
[Ref.: #69480]	flagellated	no	97.633	yes
[Ref.: #69480]	gram-positive	yes	93.127	yes
[Ref.: #69480]	anaerobic	no	98.705	yes
[Ref.: #69480]	aerobic	no	84.384	yes
[Ref.: #69480]	halophile	yes	86.385	yes
[Ref.: #69480]	spore-forming	no	93.642	yes
[Ref.: #69480]	thermophile	no	90.113	yes
[Ref.: #69480]	glucose-util	yes	87.424	no
[Ref.: #69480]	glucose-ferment	yes	57.587	no

Availability in culture collections External links

[Ref.: #12030]

Culture collection no.

DSM 44849, CCUG 45804, CIP 107431, JCM 12368

[Ref.: #72728]

SI-ID 100281

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849.	Tippelt A, Mollmann S, Albersmeier A, Jaenicke S, Ruckert C, Tauch A	Genome Announc	10.1128/genomeA.00845-14	2014	*
Phylogeny	Corynebacterium atypicum sp. nov., from a human clinical source, does not contain corynomycolic acids.	Hall V, Collins MD, Hutson RA, Lawson PA, Falsen E, Duerden BI	Int J Syst Evol Microbiol	10.1099/ijs.0.02442-0	2003	*

References

#12030

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44849

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23198

Val Hall, Matthew D. Collins, Roger A. Hutson, Paul A. Lawson, Enevold Falsen, Brian I. Duerden: Corynebacterium atypicum sp. nov., from a human clinical source, does not contain corynomycolic acids. IJSEM 53: 1065 - 1068 2003 ( DOI 10.1099/ijs.0.02442-0 , PubMed 12892127 )

#33793 ; Curators of the CIP;
#56929 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45804

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72728

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100281.1 )

#116548 Collection of Institut Pasteur ; Curators of the CIP; CIP 107431
* These data were automatically processed and therefore are not curated

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