Corynebacterium sphenisci (DSM 44792, CCUG 46398, CECT 5990)

Name: Corynebacterium sphenisci (DSM 44792, CCUG 46398, CECT 5990)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3212

Type strain

Strain Designation 38, Garayzabal 38

Culture col. no. DSM 44792 CCUG 46398 CECT 5990 CIP 108094 38 2 more

NCBI tax ID(s) 1437874 191493

Special Collections DSMZ CCUG JCM CIP Literature strains

History <- CCUG <- E. Burjasot, CECT <- J. F. Fernández-Garayzábal; 38 CECT 5990 <-- J. F. Fernández-Garayzábal 38. CIP <- 2003, CCUG <- CECT <- 2002, J.F. Fernandez-Garayzabal, Madrid, Spain: strain Garayzabal 38

Links

Corynebacterium sphenisci 38 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from penguin healthy wild .

Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 100283

CECT 5990,CCUG 46398,CIP 108094,DSM 44792,JCM 12270

@ref 20215

Last LPSN update 2026-02-09 11:18:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium sphenisci

Full scientific name Corynebacterium sphenisci Goyache et al. 2003

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
23197	positive	rod-shaped
123257	positive	rod-shaped
125439	positive		99.3
125438			91.5
125438	positive		92.965

Colony morphology

@ref	Type of hemolysis	Colony size	Colony color	Incubation period	Medium used
23197	gamma	1-2 mm	whitish	2 days	sheep-blood agar
123257

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11979	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
11979	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23197	sheep-blood agar
34314	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
123257	CIP Medium 72	Medium recipe at CIP
123257	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11979	positive	growth	37	mesophilic
23197	positive	growth	37	mesophilic
34314	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
123257	positive	growth	25-37	mesophilic
123257	negative	growth	10
123257	negative	growth	15
123257	negative	growth	41
123257	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23197	facultative anaerobe
123257	facultative anaerobe
125439	facultative anaerobe	97.7

Spore formation

23197

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123257	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23197	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
23197		3-O-methyl alpha-D-glucopyranoside	-	builds acid from
23197	17426 ChEBI	5-dehydro-D-gluconate	-	builds acid from
23197	27613 ChEBI	amygdalin	-	builds acid from
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
23197	18305 ChEBI	arbutin	-	builds acid from
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
23197	17057 ChEBI	cellobiose	-	builds acid from
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
123257	16947 ChEBI	citrate	-	carbon source
23197	17108 ChEBI	D-arabinose	-	builds acid from
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
23197	18333 ChEBI	D-arabitol	-	builds acid from
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
23197	28847 ChEBI	D-fucose	-	builds acid from
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
23197	62318 ChEBI	D-lyxose	-	builds acid from
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
23197	16443 ChEBI	D-tagatose	-	builds acid from
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
23197	17113 ChEBI	erythritol	-	builds acid from
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23197	4853 ChEBI	esculin	-	hydrolysis
123257	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
23197	28757 ChEBI	fructose	+	builds acid from
23197	16813 ChEBI	galactitol	-	builds acid from
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23197	28260 ChEBI	galactose	-	builds acid from
23197	28260 ChEBI	galactose	+	builds acid from
23197	5291 ChEBI	gelatin	-	hydrolysis
23197	28066 ChEBI	gentiobiose	-	builds acid from
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
23197	17234 ChEBI	glucose	+	builds acid from
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
23197	14336 ChEBI	glycerol 1-phosphate	-	builds acid from
23197	28087 ChEBI	glycogen	-	builds acid from
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
123257	606565 ChEBI	hippurate	+	hydrolysis
23197	15443 ChEBI	inulin	-	builds acid from
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
23197	30849 ChEBI	L-arabinose	-	builds acid from
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
23197	18403 ChEBI	L-arabitol	-	builds acid from
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
23197	18287 ChEBI	L-fucose	-	builds acid from
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
23197	17266 ChEBI	L-sorbose	-	builds acid from
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23197	17716 ChEBI	lactose	-	builds acid from
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
23197	17306 ChEBI	maltose	+	builds acid from
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
23197	29864 ChEBI	mannitol	-	builds acid from
23197	37684 ChEBI	mannose	+	builds acid from
23197	6731 ChEBI	melezitose	-	builds acid from
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
23197	28053 ChEBI	melibiose	-	builds acid from
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
23197	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
23197	17268 ChEBI	myo-inositol	-	builds acid from
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
23197	506227 ChEBI	N-acetylglucosamine	-	builds acid from
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
23197	17632 ChEBI	nitrate	+	reduction
123257	17632 ChEBI	nitrate	+	reduction
123257	17632 ChEBI	nitrate	+	respiration
123257	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
123257	45285 ChEBI	pyrazinamide	-	hydrolysis
23197	16634 ChEBI	raffinose	-	builds acid from
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
23197	26546 ChEBI	rhamnose	-	builds acid from
23197	15963 ChEBI	ribitol	-	builds acid from
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23197	33942 ChEBI	ribose	-	builds acid from
23197	17814 ChEBI	salicin	-	builds acid from
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
23197	30911 ChEBI	sorbitol	-	builds acid from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
23197	17992 ChEBI	sucrose	-	builds acid from
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
23197	27082 ChEBI	trehalose	+	builds acid from
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
23197	32528 ChEBI	turanose	-	builds acid from
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
23197	16199 ChEBI	urea	-	hydrolysis
23197	17151 ChEBI	xylitol	-	builds acid from
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
23197	18222 ChEBI	xylose	-	builds acid from

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123257	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123257	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123257	15688 ChEBI	acetoin	-
123257	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
23197	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
123257	alcohol dehydrogenase	-	1.1.1.1
23197	alkaline phosphatase	-	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
23197	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
23197	alpha-galactosidase	-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
23197	alpha-glucosidase	-	3.2.1.20
68382	alpha-glucosidase	+	3.2.1.20	from API zym
23197	alpha-mannosidase	-	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123257	amylase	-
23197	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
123257	beta-galactosidase	+	3.2.1.23
23197	beta-glucosidase	-	3.2.1.21
68382	beta-glucosidase	-	3.2.1.21	from API zym
23197	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123257	caseinase	+	3.4.21.50
23197	catalase	+	1.11.1.6
123257	catalase	+	1.11.1.6
23197	chymotrypsin	+	3.4.4.5
23197	cystine arylamidase	+	3.4.11.3
68382	cystine arylamidase	-	3.4.11.3	from API zym
23197	cytochrome oxidase	-	1.9.3.1
123257	DNase	-
23197	esterase (C 4)	+
68382	esterase (C 4)	+		from API zym
23197	esterase lipase (C 8)	+
68382	esterase lipase (C 8)	+		from API zym
123257	gamma-glutamyltransferase	+	2.3.2.2
123257	gelatinase	+
123257	lecithinase	-
23197	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
123257	lipase	-
23197	lipase (C 14)	+
68382	lipase (C 14)	-		from API zym
123257	lysine decarboxylase	-	4.1.1.18
23197	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
23197	naphthol-AS-BI-phosphohydrolase	+
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123257	ornithine decarboxylase	-	4.1.1.17
123257	oxidase	-
123257	phenylalanine ammonia-lyase	-	4.3.1.24
23197	pyrazinamidase	+	3.5.1.B15
23197	pyrrolidonyl arylamidase	-	3.4.19.3
23197	trypsin	-	3.4.21.4
68382	trypsin	-	3.4.21.4	from API zym
123257	tryptophan deaminase	-
123257	tween esterase	+
123257	urease	+	3.5.1.5
23197	valine arylamidase	+
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	enterobactin biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	starch degradation	100	10 of 10
66794	phenylmercury acetate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	aerobactin biosynthesis	100	1 of 1
66794	hydrogen production	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	threonine metabolism	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	vitamin B12 metabolism	82.35	28 of 34
66794	pentose phosphate pathway	81.82	9 of 11
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	serine metabolism	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	gluconeogenesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	toluene degradation	75	3 of 4
66794	NAD metabolism	72.22	13 of 18
66794	propanol degradation	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	pyrimidine metabolism	71.11	32 of 45
66794	glycolysis	70.59	12 of 17
66794	phenylalanine metabolism	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	purine metabolism	68.09	64 of 94
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	UDP-GlcNAc biosynthesis	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	metabolism of disaccharids	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	vitamin B1 metabolism	61.54	8 of 13
66794	tryptophan metabolism	60.53	23 of 38
66794	oxidative phosphorylation	60.44	55 of 91
66794	methylglyoxal degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	vitamin K metabolism	60	3 of 5
66794	lipid metabolism	58.06	18 of 31
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	proline metabolism	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	flavin biosynthesis	53.33	8 of 15
66794	histidine metabolism	51.72	15 of 29
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	glutathione metabolism	50	7 of 14
66794	ethanol fermentation	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	Entner Doudoroff pathway	50	5 of 10
66794	arginine metabolism	50	12 of 24
66794	CMP-KDO biosynthesis	50	2 of 4
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	urea cycle	46.15	6 of 13
66794	non-pathway related	44.74	17 of 38
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	glycine metabolism	40	4 of 10
66794	cellulose degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	vitamin B6 metabolism	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	degradation of hexoses	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	ubiquinone biosynthesis	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	d-xylose degradation	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	degradation of pentoses	25	7 of 28
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	degradation of sugar alcohols	25	4 of 16
66794	ascorbate metabolism	22.73	5 of 22
66794	4-hydroxymandelate degradation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123257	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123257	not determinedn.d.	+	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Gastrointestinal tract	#Rectum
#Host Body-Site	#Urogenital tract	-
#Host	#Birds	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
11979	penguin healthy wild (Spheniscus magellanicus)	Spheniscus magellanicus	Madrid	Spain	ESP	Europe
23197	cloaca of an apparently healthy wild magellanic penguin (Spheniscus magellanicus)
57190	Penguin,healthy wild (Spheniscus magellanicus)		Madrid	Spain	ESP	Europe
67770	Cloaca of a wild penguin (Spheniscus magellanicus)	Spheniscus magellanicus
123257	Penguin, Healthy wild, Sphniscus megellanicus			Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ440964 (>99% sequence identity) for Corynebacterium sphenisci subclade from Microbeatlas

Aquatic Samples	283
Soil Samples	707
Animal Samples	8391
Plant Samples	78
Total Samples	9459

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11979	1	Risk group (German classification) According to TRBA 466
123257	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM194150v1 assembly for Corynebacterium sphenisci DSM 44792	complete	GCA_001941505	1437874.4	2623620534	1437874	99.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Corynebacterium sphenisci strain DSMZ44792T 16S ribosomal RNA gene, partial sequence	AY672619	418		191493
23197	Corynebacterium sphenisci partial 16S rRNA gene, type strain CECT 5990	AJ440964	1382		191493

GC content

@ref	GC-content (mol%)	Method
67770	74.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium sphenisci DSM 44792
PATRIC: 1437874.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	52.20	no
125439	motility	BacteriaNetⓘ	no	79.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	97.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium sphenisci DSM 44792 DSM 44792
NCBI: GCA_001941505.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.97	yes
125438	anaerobic	anaerobicⓘ	no	93.40	yes
125438	aerobic	aerobicⓘ	yes	58.33	no
125438	spore-forming	spore-formingⓘ	no	77.35	yes
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	91.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages.	Almpanis A, Swain M, Gatherer D, McEwan N.	Microb Genom	10.1099/mgen.0.000168	2018
Genetics	Variability of Inverted Repeats in All Available Genomes of Bacteria.	Porubiakova O, Havlik J, Indu, Sedy M, Prepechalova V, Bartas M, Bidula S, Stastny J, Fojta M, Brazda V.	Microbiol Spectr	10.1128/spectrum.01648-23	2023
Phylogeny	Development of a systematic feedback isolation approach for targeted strains from mixed culture systems.	Poudel P, Tashiro Y, Miyamoto H, Miyamoto H, Okugawa Y, Sakai K.	J Biosci Bioeng	10.1016/j.jbiosc.2016.07.019	2017
	Phylogenomic Reappraisal of Fatty Acid Biosynthesis, Mycolic Acid Biosynthesis and Clinical Relevance Among Members of the Genus Corynebacterium.	Dover LG, Thompson AR, Sutcliffe IC, Sangal V.	Front Microbiol	10.3389/fmicb.2021.802532	2021
Phylogeny	The Raw Milk Microbiota from Semi-Subsistence Farms Characteristics by NGS Analysis Method.	Hornik B, Czarny J, Staninska-Pieta J, Wolko L, Cyplik P, Piotrowska-Cyplik A.	Molecules	10.3390/molecules26165029	2021
	The Presence and Localization of G-Quadruplex Forming Sequences in the Domain of Bacteria.	Bartas M, Cutova M, Brazda V, Kaura P, Stastny J, Kolomaznik J, Coufal J, Goswami P, Cerven J, Pecinka P.	Molecules	10.3390/molecules24091711	2019
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Corynebacterium sputi sp. nov., isolated from the sputum of a patient with pneumonia.	Yassin AF, Siering C.	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000414-0	2008
Phylogeny	Corynebacterium sphenisci sp. nov., isolated from wild penguins.	Goyache J, Ballesteros C, Vela AI, Collins MD, Briones V, Hutson RA, Potti J, Garcia-Borboroglu P, Dominguez L, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.02502-0	2003

References

#11979	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44792
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23197	J. Goyache, C. Ballesteros, A. I. Vela, M. D. Collins, V. Briones, R. A. Hutson, J. Potti, P. García-Borboroglu, L. Domínguez, J. F. Fernández-Garayzábal: Corynebacterium sphenisci sp. nov., isolated from wild penguins. IJSEM 53: 1009 - 1012 2003 ( DOI 10.1099/ijs.0.02502-0 , PubMed 12892119 )
#34314	; Curators of the CIP;
#57190	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46398
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123257	Collection of Institut Pasteur ; Curators of the CIP; CIP 108094
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Corynebacterium sphenisci (DSM 44792, CCUG 46398, CECT 5990)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001941505

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media