Corynebacterium argentoratense DSM 44202 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from human throat.
Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Corynebacteriaceae |
| Genus Corynebacterium |
| Species Corynebacterium argentoratense |
| Full scientific name Corynebacterium argentoratense Riegel et al. 1995 |
| BacDive ID | Other strains from Corynebacterium argentoratense (5) | Type strain |
|---|---|---|
| 151933 | C. argentoratense CCUG 45244 | |
| 154622 | C. argentoratense CCUG 54613 | |
| 154850 | C. argentoratense CCUG 55399 | |
| 155585 | C. argentoratense CCUG 58244 | |
| 155958 | C. argentoratense CCUG 59781 |
| @ref | Type of hemolysis | Colony size | Colony color | Colony shape | Incubation period | Medium used | |
|---|---|---|---|---|---|---|---|
| 20017 | Ivory (1014) | 10-14 days | ISP 2 | ||||
| 20017 | Ivory (1014) | 10-14 days | ISP 3 | ||||
| 20017 | Ivory (1014) | 10-14 days | ISP 4 | ||||
| 20017 | Ivory (1014) | 10-14 days | ISP 5 | ||||
| 20017 | Ivory (1014) | 10-14 days | ISP 6 | ||||
| 20017 | Ivory (1014) | 10-14 days | ISP 7 | ||||
| 23172 | gamma | 2 mm | creamy | circular | 2 days | blood agar | |
| 116493 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11598 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 11598 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 20017 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 20017 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 20017 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 20017 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 20017 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 20017 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 23172 | blood agar | ||||
| 41101 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 116493 | CIP Medium 3 | Medium recipe at CIP |
| 23172 | Spore formationno |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 116493 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 23172 | 17634 ChEBI | D-glucose | + | builds acid from | |
| 68379 | 17634 ChEBI | D-glucose | + | fermentation | from API Coryne |
| 68371 | 17634 ChEBI | D-glucose | - | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 23172 | 16899 ChEBI | D-mannitol | - | builds acid from | |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 23172 | 65327 ChEBI | D-xylose | - | builds acid from | |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 23172 | 16991 ChEBI | dna | - | degradation | |
| 23172 | 16991 ChEBI | dna | - | hydrolysis | |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 23172 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 116493 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 23172 | 28757 ChEBI | fructose | + | builds acid from | |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 23172 | 28260 ChEBI | galactose | - | builds acid from | |
| 23172 | 5291 ChEBI | gelatin | - | degradation | |
| 23172 | 5291 ChEBI | gelatin | - | hydrolysis | |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 23172 | 28087 ChEBI | glycogen | - | builds acid from | |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 23172 | 606565 ChEBI | hippurate | +/- | hydrolysis | |
| 116493 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 23172 | 17716 ChEBI | lactose | - | builds acid from | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 23172 | 17306 ChEBI | maltose | - | builds acid from | |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 23172 | 17632 ChEBI | nitrate | + | reduction | |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 116493 | 17632 ChEBI | nitrate | - | reduction | |
| 116493 | 17632 ChEBI | nitrate | + | respiration | |
| 116493 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 23172 | 33942 ChEBI | ribose | +/- | builds acid from | |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 23172 | 28017 ChEBI | starch | +/- | hydrolysis | |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 23172 | 17992 ChEBI | sucrose | - | builds acid from | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 23172 | 27082 ChEBI | trehalose | - | builds acid from | |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 23172 | 18186 ChEBI | tyrosine | - | degradation | |
| 23172 | 18186 ChEBI | tyrosine | - | hydrolysis | |
| 23172 | 16199 ChEBI | urea | - | degradation | |
| 23172 | 16199 ChEBI | urea | - | hydrolysis | |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 116493 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 23172 | 6-phospho-beta-galactosidase | - | 3.2.1.85 | |
| 23172 | acid phosphatase | +/- | 3.1.3.2 | |
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 116493 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 23172 | alkaline phosphatase | - | 3.1.3.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 23172 | alpha-chymotrypsin | + | 3.4.21.1 | |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 23172 | alpha-glucosidase | - | 3.2.1.20 | |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 116493 | amylase | - | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 116493 | beta-galactosidase | - | 3.2.1.23 | |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 23172 | beta-glucuronidase | - | 3.2.1.31 | |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 116493 | caseinase | - | 3.4.21.50 | |
| 23172 | catalase | + | 1.11.1.6 | |
| 116493 | catalase | + | 1.11.1.6 | |
| 68379 | catalase | + | 1.11.1.6 | from API Coryne |
| 23172 | cystine arylamidase | + | 3.4.11.3 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 23172 | cytochrome oxidase | - | 1.9.3.1 | |
| 116493 | DNase | - | ||
| 23172 | esterase | +/- | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 23172 | esterase lipase (C 8) | + | ||
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 116493 | gelatinase | - | ||
| 68379 | gelatinase | - | from API Coryne | |
| 116493 | lecithinase | - | ||
| 23172 | leucine arylamidase | +/- | 3.4.11.1 | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 116493 | lysine decarboxylase | - | 4.1.1.18 | |
| 23172 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 116493 | ornithine decarboxylase | +/- | 4.1.1.17 | |
| 116493 | oxidase | - | ||
| 116493 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 23172 | pyrazinamidase | + | 3.5.1.B15 | |
| 23172 | pyrrolidonyl arylamidase | - | 3.4.19.3 | |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 116493 | tryptophan deaminase | - | ||
| 116493 | tween esterase | - | ||
| 116493 | urease | - | 3.5.1.5 | |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | glycolate and glyoxylate degradation | 83.33 | 5 of 6 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | threonine metabolism | 80 | 8 of 10 | ||
| 66794 | starch degradation | 80 | 8 of 10 | ||
| 66794 | methylglyoxal degradation | 80 | 4 of 5 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | citric acid cycle | 78.57 | 11 of 14 | ||
| 66794 | heme metabolism | 78.57 | 11 of 14 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | valine metabolism | 77.78 | 7 of 9 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | palmitate biosynthesis | 77.27 | 17 of 22 | ||
| 66794 | vitamin B1 metabolism | 76.92 | 10 of 13 | ||
| 66794 | vitamin B12 metabolism | 76.47 | 26 of 34 | ||
| 66794 | lactate fermentation | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | purine metabolism | 73.4 | 69 of 94 | ||
| 66794 | pentose phosphate pathway | 72.73 | 8 of 11 | ||
| 66794 | metabolism of disaccharids | 72.73 | 8 of 11 | ||
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | propionate fermentation | 70 | 7 of 10 | ||
| 66794 | phenylalanine metabolism | 69.23 | 9 of 13 | ||
| 66794 | glutamate and glutamine metabolism | 67.86 | 19 of 28 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | histidine metabolism | 65.52 | 19 of 29 | ||
| 66794 | glycolysis | 64.71 | 11 of 17 | ||
| 66794 | pyrimidine metabolism | 64.44 | 29 of 45 | ||
| 66794 | glutathione metabolism | 64.29 | 9 of 14 | ||
| 66794 | tryptophan metabolism | 63.16 | 24 of 38 | ||
| 66794 | gluconeogenesis | 62.5 | 5 of 8 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | ketogluconate metabolism | 62.5 | 5 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 62.5 | 5 of 8 | ||
| 66794 | alanine metabolism | 62.07 | 18 of 29 | ||
| 66794 | NAD metabolism | 61.11 | 11 of 18 | ||
| 66794 | oxidative phosphorylation | 60.44 | 55 of 91 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 60 | 6 of 10 | ||
| 66794 | 3-phenylpropionate degradation | 60 | 9 of 15 | ||
| 66794 | cellulose degradation | 60 | 3 of 5 | ||
| 66794 | lipid metabolism | 58.06 | 18 of 31 | ||
| 66794 | ubiquinone biosynthesis | 57.14 | 4 of 7 | ||
| 66794 | propanol degradation | 57.14 | 4 of 7 | ||
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | ||
| 66794 | cysteine metabolism | 55.56 | 10 of 18 | ||
| 66794 | phenol degradation | 55 | 11 of 20 | ||
| 66794 | methionine metabolism | 53.85 | 14 of 26 | ||
| 66794 | leucine metabolism | 53.85 | 7 of 13 | ||
| 66794 | urea cycle | 53.85 | 7 of 13 | ||
| 66794 | non-pathway related | 52.63 | 20 of 38 | ||
| 66794 | lysine metabolism | 50 | 21 of 42 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | toluene degradation | 50 | 2 of 4 | ||
| 66794 | cis-vaccenate biosynthesis | 50 | 1 of 2 | ||
| 66794 | sulfopterin metabolism | 50 | 2 of 4 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | arginine metabolism | 50 | 12 of 24 | ||
| 66794 | isoprenoid biosynthesis | 50 | 13 of 26 | ||
| 66794 | butanoate fermentation | 50 | 2 of 4 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | proline metabolism | 45.45 | 5 of 11 | ||
| 66794 | molybdenum cofactor biosynthesis | 44.44 | 4 of 9 | ||
| 66794 | androgen and estrogen metabolism | 43.75 | 7 of 16 | ||
| 66794 | reductive acetyl coenzyme A pathway | 42.86 | 3 of 7 | ||
| 66794 | tyrosine metabolism | 42.86 | 6 of 14 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | gallate degradation | 40 | 2 of 5 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | sulfate reduction | 38.46 | 5 of 13 | ||
| 66794 | degradation of sugar alcohols | 37.5 | 6 of 16 | ||
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | ||
| 66794 | formaldehyde oxidation | 33.33 | 1 of 3 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | flavin biosynthesis | 33.33 | 5 of 15 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | pantothenate biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | Entner Doudoroff pathway | 30 | 3 of 10 | ||
| 66794 | degradation of hexoses | 27.78 | 5 of 18 | ||
| 66794 | arachidonic acid metabolism | 27.78 | 5 of 18 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | ||
| 66794 | degradation of pentoses | 25 | 7 of 28 |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116493 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Infection | #Patient | - | |
| #Host | #Human | - | |
| #Host Body-Site | #Oral cavity and airways | #Throat |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Isolation date | |
|---|---|---|---|---|---|---|---|
| 11598 | human throat | Strasbourg | France | FRA | Europe | ||
| 23172 | throats of four human patients | ||||||
| 52389 | Human throat,tonsillitis | Strasbourg | France | FRA | Europe | ||
| 67770 | Throat of a patient hospitalized at the University Hospital of Strasbourg | France | FRA | Europe | |||
| 116493 | Human, Throat | Strasbourg | France | FRA | Europe | 1990 |
Global distribution of 16S sequence X83955 (>99% sequence identity) for Corynebacterium argentoratense subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM59055v1 assembly for Corynebacterium argentoratense DSM 44202 | complete | 1348662 | 98.31 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Corynebacterium argentoratense strain DSM 44202 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536500 | 337 | 42817 | ||
| 11598 | C.argentoratense 16S rRNA gene (CIP 104296) | X83955 | 1314 | 42817 | ||
| 67770 | Corynebacterium argentoratense partial 16S rRNA gene, strain IBS B10697 | HF558381 | 1495 | 42817 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 68.60 | no |
| 125439 | motility | BacteriaNetⓘ | no | 99.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 99.70 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.49 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 92.22 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 59.20 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 82.49 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 91.15 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 91.50 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Draft Genome Sequences of the Two Unrelated Macrolide-Resistant Corynebacterium argentoratense Strains CNM 463/05 and CNM 601/08, Isolated from Patients in the University Hospital of León, Spain. | Fernandez-Natal MI, Soriano F, Acedo A, Hernandez M, Tauch A, Rodriguez-Lazaro D. | Genome Announc | 10.1128/genomea.00765-15 | 2015 | ||
| Genetics | Phenotypic, molecular characterization, antimicrobial susceptibility and draft genome sequence of Corynebacterium argentoratense strains isolated from clinical samples. | Fernandez-Natal I, Saez-Nieto JA, Rodriguez-Lazaro D, Valdezate-Ramos S, Parras-Padilla T, Medina MJ, Rodriguez-Pollan RH, Blom J, Tauch A, Soriano F. | New Microbes New Infect | 10.1016/j.nmni.2016.01.007 | 2016 | |
| Genetics | MP4: a machine learning based classification tool for prediction and functional annotation of pathogenic proteins from metagenomic and genomic datasets. | Gupta A, Malwe AS, Srivastava GN, Thoudam P, Hibare K, Sharma VK. | BMC Bioinformatics | 10.1186/s12859-022-05061-7 | 2022 | |
| Genetics | Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics. | Koehorst JJ, Saccenti E, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M. | F1000Res | 10.12688/f1000research.9416.3 | 2016 | |
| Immunochromatographic strip test for rapid detection of diphtheria toxin: description and multicenter evaluation in areas of low and high prevalence of diphtheria. | Engler KH, Efstratiou A, Norn D, Kozlov RS, Selga I, Glushkevich TG, Tam M, Melnikov VG, Mazurova IK, Kim VE, Tseneva GY, Titov LP, George RC. | J Clin Microbiol | 10.1128/jcm.40.1.80-83.2002 | 2002 | ||
| A Lethal Late Complication: Aortoesophageal Fistula after TEVAR. | Karaca S, Yalic I, Bulut B, Engin Y, Posacioglu H. | Int J Angiol | 10.1055/s-0043-1776144 | 2025 | ||
| Genetics | Metagenomic analysis of the denture-associated oral microbiome in patients with denture stomatitis | Manzoor M, Pussinen P, Saarela R, Hiltunen K, Mantyla P. | Sci Rep | 2025 | ||
| The Oral Microbiome Profile of Water Polo Players Aged 16-20. | Kalabiska I, Annar D, Keki Z, Borbas Z, Bhattoa HP, Zsakai A. | Sports (Basel) | 10.3390/sports11110216 | 2023 | ||
| Pathogenicity | Surfactant Protein A and Microbiome Composition in Patients With Atraumatic Intraoral Lesions. | Adibi S, Seferovic D, Tribble GD, Alcorn JL, Fakhouri WD. | Front Oral Health | 10.3389/froh.2021.663483 | 2021 | |
| Oro-Respiratory Dysbiosis and Its Modulatory Effect on Lung Mucosal Toxicity during Exposure or Co-Exposure to Carbon Nanotubes and Cigarette Smoke. | Yadav B, Bhattacharya SS, Rosen L, Nagpal R, Yadav H, Yadav JS. | Nanomaterials (Basel) | 10.3390/nano14030314 | 2024 | ||
| Altered oral microbiome in Sudanese Toombak smokeless tobacco users carries a newly emerging risk of squamous cell carcinoma development and progression. | Sami A, Elimairi I, Ryan CA, Stanton C, Patangia D, Ross RP. | Sci Rep | 10.1038/s41598-023-32892-y | 2023 | ||
| Associations of Microbial Diversity with Age and Other Clinical Variables among Pediatric Chronic Rhinosinusitis (CRS) Patients. | Lim SJ, Jithpratuck W, Wasylik K, Sriaroon P, Dishaw LJ. | Microorganisms | 10.3390/microorganisms11020422 | 2023 | ||
| Decreased diversity of salivary microbiome in patients with stable decompensated cirrhosis. | Oikonomou T, Cholongitas E, Gioula G, Minti F, Melidou A, Protonotariou E, Akriviadis E, Goulis I. | Hippokratia | 2020 | |||
| Next-generation sequencing analysis of bacterial flora in bovine protothecal mastitic milk and feces. | Miura A, Kurumisawa T, Kano R, Ito T, Suzuki K, Kamata H. | J Vet Med Sci | 10.1292/jvms.18-0649 | 2019 | ||
| Phylogeny | Role of Williamsia and Segniliparus in human infections with the approach taxonomy, cultivation, and identification methods. | Fatahi-Bafghi M. | Ann Clin Microbiol Antimicrob | 10.1186/s12941-021-00416-z | 2021 | |
| Microbial characteristics across different tongue coating types in a healthy population. | Chen H, Li Q, Li M, Liu S, Yao C, Wang Z, Zhao Z, Liu P, Yang F, Li X, Wang J, Zeng Y, Tong X. | J Oral Microbiol | 10.1080/20002297.2021.1946316 | 2021 | ||
| Phylogeny | Characterization of mucosal biofilms on human adenoid tissues. | Kania RE, Lamers GE, Vonk MJ, Dorpmans E, Struik J, Tran Ba Huy P, Hiemstra P, Bloemberg GV, Grote JJ. | Laryngoscope | 10.1097/mlg.0b013e318155a464 | 2008 | |
| Characterization and antimicrobial susceptibility of one antibiotic-sensitive and one multidrug-resistant Corynebacterium kroppenstedtii strain isolated from patients with granulomatous mastitis. | Fernandez-Natal I, Rodriguez-Lazaro D, Marrodan-Ciordia T, Saez-Nieto JA, Valdezate S, Rodriguez-Pollan H, Tauch A, Soriano F. | New Microbes New Infect | 10.1016/j.nmni.2016.09.006 | 2016 | ||
| Pathogenicity | A Novel Approach to Study the Effect of Ciprofloxacin on Biofilms of Corynebacterium spp. Using Confocal Laser Scanning Microscopy. | Olender A, Bogut A, Magrys A, Krol-Turminska K. | Pol J Microbiol | 10.21307/pjm-2018-051 | 2018 | |
| Enzymology | Characteristics of oral methicillin-resistant Staphylococcus epidermidis isolated from dental plaque. | Tang B, Gong T, Cui Y, Wang L, He C, Lu M, Chen J, Jing M, Zhang A, Li Y. | Int J Oral Sci | 10.1038/s41368-020-0079-5 | 2020 | |
| Salivary dysbiosis in Sjögren's syndrome and a commensal-mediated immunomodulatory effect of salivary gland epithelial cells. | Tseng YC, Yang HY, Lin WT, Chang CB, Chien HC, Wang HP, Chen CM, Wang JT, Li C, Wu SF, Hsieh SC. | NPJ Biofilms Microbiomes | 10.1038/s41522-021-00192-w | 2021 | ||
| Pathogenicity | Species identities and antimicrobial susceptibilities of corynebacteria isolated from various clinical sources. | Riegel P, Ruimy R, Christen R, Monteil H. | Eur J Clin Microbiol Infect Dis | 10.1007/bf01691153 | 1996 | |
| Phylogeny | Corynebacterium freneyi bacteremia. | Auzias A, Bollet C, Ayari R, Drancourt M, Raoult D. | J Clin Microbiol | 10.1128/jcm.41.6.2777-2778.2003 | 2003 | |
| Genetics | Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome. | Jiang B, Liang X, Chen Y, Ma T, Liu L, Li J, Jiang R, Chen T, Zhang X, Li S. | Sci Rep | 10.1038/srep00936 | 2012 | |
| Pseudomonas aeruginosa Quorum-Sensing and Type VI Secretion System Can Direct Interspecific Coexistence During Evolution. | Zhao K, Du L, Lin J, Yuan Y, Wang X, Yue B, Wang X, Guo Y, Chu Y, Zhou Y. | Front Microbiol | 10.3389/fmicb.2018.02287 | 2018 | ||
| An Update on Novel Taxa and Revised Taxonomic Status of Bacteria Isolated from Domestic Animals Described in 2018 to 2021. | Munson E, Lawhon SD, Burbick CR, Zapp A, Villaflor M, Thelen E. | J Clin Microbiol | 10.1128/jcm.00281-22 | 2023 | ||
| Phylogeny | Identification of rare pathogenic bacteria in a clinical microbiology laboratory: impact of matrix-assisted laser desorption ionization-time of flight mass spectrometry. | Seng P, Abat C, Rolain JM, Colson P, Lagier JC, Gouriet F, Fournier PE, Drancourt M, La Scola B, Raoult D. | J Clin Microbiol | 10.1128/jcm.00492-13 | 2013 | |
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Genetics | Whole-Genome Sequence of the Clinical Strain Corynebacterium argentoratense DSM 44202, Isolated from a Human Throat Specimen. | Bomholt C, Glaub A, Gravermann K, Albersmeier A, Brinkrolf K, Ruckert C, Tauch A | Genome Announc | 10.1128/genomeA.00793-13 | 2013 | |
| Classification of 27 Corynebacterium kroppenstedtii-Like Isolates Associated with Mastitis in China and Descriptions of C. parakroppenstedtii sp. nov. and C. pseudokroppenstedtii sp. nov. | Luo Q, Chen Q, Feng J, Zhang T, Luo L, Chen C, Liu X, Xu N, Qu P. | Microbiol Spectr | 10.1128/spectrum.01372-21 | 2022 | ||
| Phylogeny | Classification of three corynebacterial strains isolated from the Northern Bald Ibis (Geronticus eremita): proposal of Corynebacterium choanae sp. nov., Corynebacterium pseudopelargi sp. nov., and Corynebacterium gerontici sp. nov. | Busse HJ, Kleinhagauer T, Glaeser SP, Spergser J, Kampfer P, Ruckert C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003580 | 2019 | |
| Phylogeny | Corynebacterium argentoratense sp. nov., from the human throat. | Riegel P, Ruimy R, De Briel D, Prevost G, Jehl F, Bimet F, Christen R, Monteil H | Int J Syst Bacteriol | 10.1099/00207713-45-3-533 | 1995 |
| #11598 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44202 |
| #20017 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #23172 | P. RIEGEL, R. RUIMY, D. DE BRIEL, G. PREVOST, F. JEHL, F. BIMET, R. CHRISTEN, H. MONTEIL: Corynebacterium argentoratense sp. nov., from the Human Throat. IJSEM 45: 533 - 537 1995 ( DOI 10.1099/00207713-45-3-533 , PubMed 8590681 ) |
| #41101 | ; Curators of the CIP; |
| #52389 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34893 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116493 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104296 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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