Name: Corynebacterium pseudodiphtheriticum 153
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3144

Type strain:

Species: Corynebacterium pseudodiphtheriticum

Strain Designation: 153

Culture col. no.: DSM 44287, ATCC 10700, ATCC 7091, CCUG 27539, IFO 15362, NBRC 15362, NCTC 11136, JCM 11665, BCRC 10656, CCM 2821, CECT 755, CIP 103420, LMG 19053, PCM 2051

Strain history: CIP <- 1990, ATCC <- J.M. Coffey: strain 153

NCBI tax ID(s): 1121368 (strain), 37637 (species)

SI-ID 12979

LMG 19053, ATCC 10700, ATCC 7091, CCUG 27539, DSM 44287, IFO 15362, NCTC 11136, CIP 103420, CCM 2821, CECT 755, CCRC 10656, JCM 11665, NBRC 15362, BCRC 10656, CNCTC 5691

Special Collections

Other strains from Corynebacterium pseudodiphtheriticum

Section

Corynebacterium pseudodiphtheriticum 153 is a microaerophile, Gram-positive bacterium that was isolated from human throat.

Gram-positive
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium pseudodiphtheriticum**
	Full Scientific Name (LPSN)	Corynebacterium pseudodiphtheriticum Lehmann and Neumann 1896 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #121985]	Gram stain	positive

[Ref.: #121985]	Cell shape	rod-shaped

[Ref.: #121985]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94

[Ref.: #19645]	Colony color	Beige
[Ref.: #19645]	Incubation period	10-14 days
[Ref.: #19645]	Cultivation medium used	ISP 2

[Ref.: #19645]	Colony color	Beige
[Ref.: #19645]	Incubation period	10-14 days
[Ref.: #19645]	Cultivation medium used	ISP 3

[Ref.: #19645]	Colony color	Beige
[Ref.: #19645]	Incubation period	10-14 days
[Ref.: #19645]	Cultivation medium used	ISP 4

[Ref.: #19645]	Colony color	Beige
[Ref.: #19645]	Incubation period	10-14 days
[Ref.: #19645]	Cultivation medium used	ISP 5

[Ref.: #19645]	Colony color	Beige
[Ref.: #19645]	Incubation period	10-14 days
[Ref.: #19645]	Cultivation medium used	ISP 6

[Ref.: #19645]	Colony color	Beige
[Ref.: #19645]	Incubation period	10-14 days
[Ref.: #19645]	Cultivation medium used	ISP 7

[Ref.: #19645]	Multicellular complex forming ability	no
[Ref.: #19645]	Medium Name (multicellularity)	ISP 2

[Ref.: #19645]	Multicellular complex forming ability	no
[Ref.: #19645]	Medium Name (multicellularity)	ISP 3

[Ref.: #19645]	Multicellular complex forming ability	no
[Ref.: #19645]	Medium Name (multicellularity)	ISP 4

[Ref.: #19645]	Multicellular complex forming ability	no
[Ref.: #19645]	Medium Name (multicellularity)	ISP 5

[Ref.: #19645]	Multicellular complex forming ability	no
[Ref.: #19645]	Medium Name (multicellularity)	ISP 6

[Ref.: #19645]	Multicellular complex forming ability	no
[Ref.: #19645]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11534]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #11534]

Culture medium growth

[Ref.: #11534]

Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #11534]

Culture medium composition

expand / minimize

[Ref.: #19645]

Culture medium

ISP 2

[Ref.: #19645]

Culture medium growth

[Ref.: #19645]

Culture medium composition

expand / minimize

[Ref.: #19645]

Culture medium

ISP 3

[Ref.: #19645]

Culture medium growth

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Culture medium composition

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[Ref.: #19645]

Culture medium

ISP 4

[Ref.: #19645]

Culture medium growth

[Ref.: #19645]

Culture medium composition

expand / minimize

[Ref.: #19645]

Culture medium

ISP 5

[Ref.: #19645]

Culture medium growth

[Ref.: #19645]

Culture medium composition

expand / minimize

[Ref.: #19645]

Culture medium

ISP 6

[Ref.: #19645]

Culture medium growth

[Ref.: #19645]

Culture medium composition

expand / minimize

[Ref.: #19645]

Culture medium

ISP 7

[Ref.: #19645]

Culture medium growth

[Ref.: #19645]

Culture medium composition

expand / minimize

[Ref.: #41653]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41653]

Culture medium growth

[Ref.: #41653]

Culture medium composition

expand / minimize

[Ref.: #121985]

Culture medium

CIP Medium 72

[Ref.: #121985]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121985]

Culture medium

CIP Medium 3

[Ref.: #121985]

Culture medium growth

[Ref.: #121985]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #11534]	growth	37 °C
[Ref.: #19645]	optimum	37 °C
[Ref.: #41653]	growth	30 °C
[Ref.: #48823]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #48823]

Oxygen tolerance

microaerophile

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19645]	215	-	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	+	+	not determinedn.d.
[Ref.: #11534]	4261	+	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19645]	472	not determinedn.d.	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11534]	Sample type/isolated from	human throat
[Ref.: #11534]	Geographic location (country and/or sea, region)	New York
[Ref.: #11534]	Country	USA
[Ref.: #11534]	Country ISO 3 Code	USA
[Ref.: #11534]	Continent	North America

[Ref.: #48823]	Sample type/isolated from	Human throat
[Ref.: #48823]	Geographic location (country and/or sea, region)	New York
[Ref.: #48823]	Country	USA
[Ref.: #48823]	Country ISO 3 Code	USA
[Ref.: #48823]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human throat
[Ref.: #67770]	Geographic location (country and/or sea, region)	New York
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #121985]	Sample type/isolated from	Human, Throat
[Ref.: #121985]	Geographic location (country and/or sea, region)	New York
[Ref.: #121985]	Country	United States of America
[Ref.: #121985]	Country ISO 3 Code	USA
[Ref.: #121985]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Throat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X81918 (>99% sequence identity) for Corynebacterium pseudodiphtheriticum from Microbeatlas

Aquatic Samples	814
Soil Samples	674
Animal Samples	19306
Plant Samples	158
Total Samples	20952

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11534]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #19645]	Biosafety level	2	Risk group (German classification)
[Ref.: #121985]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Corynebacterium pseudodiphtheriticum CIP 103420 gene for 16S rRNA, partial sequence.	LC752335	1503	GenBank ENA	37637 tax ID	*
[Ref.: #20218]	Corynebacterium pseudodiphthericum partial 16S rRNA gene, strain CIP103420T	AJ439343	1503	GenBank ENA	37637 tax ID	*
[Ref.: #20218]	C.pseudodiphtheriticum 16S rRNA gene (CIP 103420T)	X81918	1396	GenBank ENA	37637 tax ID	*
[Ref.: #20218]	Corynebacterium pseudodiphtheriticum gene for 16S rRNA, partial sequence	AB470617	542	GenBank ENA	37637 tax ID	*
[Ref.: #20218]	Corynebacterium pseudodiphtheriticum 16S rRNA gene, strain NCTC 11136	X84258	1483	GenBank ENA	37637 tax ID	*
[Ref.: #124043]	Corynebacterium pseudodiphtheriticum CIP 103420 gene for 16S rRNA, partial sequence.	LC752453	374	GenBank ENA	37637 tax ID	*
[Ref.: #124043]	Corynebacterium pseudodiphtheriticum NCTC 11136 gene for 16S rRNA, partial sequence.	LC752456	569	GenBank ENA	37637 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium pseudodiphtheriticum DSM 44287	GCA_000688415	contig	GenBank ENA	1121368 tax ID
[Ref.: #66792]	Corynebacterium pseudodiphtheriticum DSM 44287	1121368.3	wgs	PATRIC	1121368 tax ID	*
[Ref.: #66792]	Corynebacterium pseudodiphtheriticum DSM 44287	2556921672	draft	JGI IMG/M	1121368 tax ID	*

[Ref.: #67770]	GC-content	55.3 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	54.9 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Corynebacterium pseudodiphtheriticum DSM 44287 PATRIC: 1121368.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium pseudodiphtheriticum DSM 44287 PATRIC: 1121368.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	84.717	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.341	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	81.29	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	67.852	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.467	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94	no

Availability in culture collections External links

[Ref.: #11534]

Culture collection no.

DSM 44287, ATCC 10700, ATCC 7091, CCUG 27539, IFO 15362, NBRC 15362, NCTC 11136, JCM 11665, BCRC 10656, CCM 2821, CECT 755, CIP 103420, LMG 19053, PCM 2051

[Ref.: #72661]

SI-ID 12979

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Biofilm formation and fibrinogen and fibronectin binding activities by Corynebacterium pseudodiphtheriticum invasive strains.	Souza MC, dos Santos LS, Sousa LP, Faria YV, Ramos JN, Sabbadini PS, da Santos CS, Nagao PE, Vieira VV, Gomes DL, Hirata Junior R, Mattos-Guaraldi AL	Antonie Van Leeuwenhoek	10.1007/s10482-015-0433-3	2015	*
Pathogenicity	Aggregative adherent strains of Corynebacterium pseudodiphtheriticum enter and survive within HEp-2 epithelial cells.	Souza MC, Santos LS, Gomes DL, Sabbadini PS, Santos CS, Camello TC, Asad LM, Rosa AC, Nagao PE, Hirata Junior R, Guaraldi AL	Mem Inst Oswaldo Cruz	10.1590/s0074-02762012000400008	2012	*

References

#11534

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44287

#19645

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41653 ; Curators of the CIP;
#48823 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27539

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72661

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID12979.1 )

#121985 Collection of Institut Pasteur ; Curators of the CIP; CIP 103420

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Corynebacterium pseudodiphtheriticum DSM 44287

Corynebacterium pseudodiphtheriticum DSM 44287

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