Name: Acidiphilium multivorum DSM 11245
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 31

Type strain:

Species: Acidiphilium multivorum

Culture col. no.: DSM 11245, JCM 8867, NBRC 100785, NBRC 100883

Strain history: N. Wakao AIU 301.

NCBI tax ID(s): 62140 (species)

SI-ID 49054

DSM 11245, JCM 8867, NBRC 100785, NBRC 100883

Other strains from Acidiphilium multivorum

A. multivorum JCM 8869, NBRC 100884
A. multivorum JCM 8871, NBRC 100885
A. multivorum JCM 8872, NBRC 100886

Section

Acidiphilium multivorum DSM 11245 is a mesophilic, Gram-negative bacterium that was isolated from acid mine water.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acidiphilium*
	Species	**Acidiphilium multivorum**
	Full Scientific Name (LPSN)	Acidiphilium multivorum Wakao et al. 1995

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4256]

Culture medium

ACIDIPHILIUM MEDIUM (DSMZ Medium 269)

[Ref.: #4256]

Culture medium growth

[Ref.: #4256]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4256]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4256]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #4256]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.998

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4256]	Sample type/isolated from	acid mine water
[Ref.: #4256]	Geographic location (country and/or sea, region)	Iwate, Matsuo sulfur-pyrite mine
[Ref.: #4256]	Country	Japan
[Ref.: #4256]	Country ISO 3 Code	JPN
[Ref.: #4256]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Acid mine drainage at the abandoned Matsuo sulfur-pyrite mine
[Ref.: #67770]	Geographic location (country and/or sea, region)	Iwate
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Aquatic	-
#Condition	#Acidic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_074327 (>99% sequence identity) for Acidiphilium from Microbeatlas

Aquatic Samples	1984
Soil Samples	1654
Animal Samples	607
Plant Samples	360
Total Samples	4605

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4256]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acidiphilium multivorum gene for 16S rRNA, strain:AIU 301	AB006711	1451	ENA	62140 tax ID
[Ref.: #4256]	Acidiphilium multivorum strain AIU301 16S ribosomal RNA, complete sequence	NR_074327	1491	GenBank	62140 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acidiphilium multivorum AIU301	GCA_000202835	complete	GenBank	926570 tax ID
[Ref.: #67770]	Acidiphilium multivorum AIU301	GCA_000964345	scaffold	GenBank	926570 tax ID
[Ref.: #66792]	Acidiphilium multivorum strain JCM8867	62140.4	plasmid	PATRIC	62140 tax ID	*

[Ref.: #4256]

GC-content

67.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acidiphilium multivorum strain JCM8867 PATRIC: 62140.9
[Ref.: #69481]	spore-forming	no	87	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidiphilium multivorum AIU301 AIU301 NCBI: GCA_000964345.1
[Ref.: #69480]	motile	yes	74.512	no
[Ref.: #69480]	flagellated	no	89.32	no
[Ref.: #69480]	gram-positive	no	98.143	no
[Ref.: #69480]	anaerobic	no	94.589	no
[Ref.: #69480]	aerobic	yes	78.2	no
[Ref.: #69480]	halophile	no	90.437	no
[Ref.: #69480]	spore-forming	no	94.412	no
[Ref.: #69480]	thermophile	no	89.779	no
[Ref.: #69480]	glucose-util	yes	86.192	no
[Ref.: #69480]	glucose-ferment	no	89.731	no

Availability in culture collections External links

[Ref.: #4256]

Culture collection no.

DSM 11245, JCM 8867, NBRC 100785, NBRC 100883

[Ref.: #69715]

SI-ID 49054

References

#4256

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11245

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69715

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49054.1 )

* These data were automatically processed and therefore are not curated

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Acidiphilium multivorum strain JCM8867

Acidiphilium multivorum AIU301 AIU301

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