Name: Slackia piriformis DSM 22477
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3068

Type strain:

Species: Slackia piriformis

Culture col. no.: DSM 22477, JCM 16070, YIT 12062, KCTC 15189

Strain history: Y. Watanabe A15 (=YIT 12062).

NCBI tax ID(s): 742818 (strain), 626934 (species)

SI-ID 401197

DSM 22477

Special Collections

Section

Slackia piriformis DSM 22477 is an obligate anaerobe, Gram-positive, rod-shaped bacterium that was isolated from human faeces .

Gram-positive
rod-shaped
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Eggerthellales*
	Family	*Eggerthellaceae*
	Genus	*Slackia*
	Species	**Slackia piriformis**
	Full Scientific Name (LPSN)	Slackia piriformis Nagai et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29633]	Gram stain	positive

[Ref.: #29633]	Cell length	0.9-2.6 µm

[Ref.: #29633]	Cell width	0.4-1.1 µm

[Ref.: #29633]	Cell shape	rod-shaped

[Ref.: #29633]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #29633]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16259]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16259]

Culture medium growth

[Ref.: #16259]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16259]

Culture medium composition

expand / minimize

[Ref.: #16259]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #16259]

Culture medium growth

[Ref.: #16259]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16259]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16259]	growth	37 °C
[Ref.: #29633]	growth	37 °C
[Ref.: #29633]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #29633]			optimum	7
[Ref.: #29633]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16259]	Oxygen tolerance	obligate anaerobe
[Ref.: #29633]	Oxygen tolerance	anaerobe

[Ref.: #29633]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #29633]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #29633]	acid phosphatase	+	3.1.3.2
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #16259]	12762	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	+	+	-	+	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16259]	Sample type/isolated from	human faeces (healthy Japanese adult)
[Ref.: #16259]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #16259]	Country	Japan
[Ref.: #16259]	Country ISO 3 Code	JPN
[Ref.: #16259]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB601000 (>99% sequence identity) for Slackia piriformis subclade from Microbeatlas

Aquatic Samples	888
Soil Samples	204
Animal Samples	19381
Plant Samples	65
Total Samples	20538

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16259]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16259]	Slackia piriformis gene for 16S rRNA, partial sequence, strain: YIT 12062	AB490806	1463	GenBank ENA	742818 tax ID
[Ref.: #20218]	Slackia piriformis gene for 16S ribosomal RNA, partial sequence	AB601000	1472	GenBank ENA	742818 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Slackia piriformis YIT 12062	GCA_000296445	scaffold	GenBank ENA	742818 tax ID
[Ref.: #66792]	Slackia piriformis YIT 12062	742818.3	wgs	PATRIC	742818 tax ID	*
[Ref.: #66792]	Slackia piriformis YIT 12062	2529292933	draft	JGI IMG/M	742818 tax ID	*

[Ref.: #16259]	GC-content	58.3 mol%
[Ref.: #67770]	GC-content	58.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Slackia piriformis YIT 12062 YIT 12062 NCBI: GCA_000296445.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Slackia piriformis YIT 12062 PATRIC: 742818.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	82.563	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	87.408	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	80.378	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.763	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.255	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	yes

Availability in culture collections External links

[Ref.: #16259]

Culture collection no.

DSM 22477, JCM 16070, YIT 12062, KCTC 15189

[Ref.: #72588]

SI-ID 401197

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Slackia piriformis sp. nov. and Collinsella tanakaei sp. nov., new members of the family Coriobacteriaceae, isolated from human faeces.	Nagai F, Watanabe Y, Morotomi M	Int J Syst Evol Microbiol	10.1099/ijs.0.017533-0	2009	*

References

#16259

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22477

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29633

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26023 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72588

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401197.1 )

#26023

IJSEM 2639 2010 ( DOI 10.1099/ijs.0.017533-0 , PubMed 20023061 )

* These data were automatically processed and therefore are not curated

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Slackia piriformis YIT 12062

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