Name: Lancefieldella parvula 1246
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3040

Type strain:

Species: Lancefieldella parvula

Strain Designation: 1246

Culture col. no.: CCUG 32760, CIP 102970, DSM 20469, ATCC 33793, VPI 0546, JCM 10300, KCTC 3663

Strain history: CIP <- 2008, JCM <- M.D. Collins: strain JCM 10300, 1987, ATCC <- E.P. Cato: strain VPI 0546 <- A.R. Prévot, Inst. Pasteur, Paris, France: strain 1246, Streptococcus parvulus

NCBI tax ID(s): 521095 (strain), 1382 (species)

SI-ID 92324

ATCC 33793, CCUG 32760, NCFB 2897, CIP 102970, DSM 20469, JCM 10300, NCIMB 702897, KCTC 3663, VTT E-052774

Special Collections

Other strains from Lancefieldella parvula

Section

Lancefieldella parvula 1246 is an anaerobe bacterium that was isolated from Human gingival crevices.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Coriobacteriales*
	Family	*Atopobiaceae*
	Genus	*Lancefieldella*
	Species	**Lancefieldella parvula**
	Full Scientific Name (LPSN)	Lancefieldella parvula (Weinberg et al. 1937) Nouioui et al. 2018

	Synonym	Peptostreptococcus parvulus
	Synonym	"Streptococcus* parvulus"*
	Synonym	Atopobium parvulum

Information on morphological and physiological properties Morphology

[Ref.: #121601]	Gram stain	positive

[Ref.: #121601]	Cell shape	oval-shaped

[Ref.: #121601]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8840]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #8840]

Culture medium growth

[Ref.: #8840]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8840]

Culture medium composition

expand / minimize

[Ref.: #36589]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #36589]

Culture medium growth

[Ref.: #36589]

Culture medium composition

expand / minimize

[Ref.: #121601]

Culture medium

CIP Medium 6

[Ref.: #121601]

Culture medium growth

[Ref.: #121601]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121601]

Culture medium

CIP Medium 31

[Ref.: #121601]

Culture medium growth

[Ref.: #121601]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8840]	growth	37 °C
[Ref.: #36589]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #121601]	growth	30-37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8840]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #8840]	Murein short key	A11.31
[Ref.: #8840]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #121601]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #121601]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #121601]		acetoin ChEBI	-
[Ref.: #68380]		indole ChEBI		-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121601]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym, API rID32A
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #121601]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121601]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121601]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121601]	oxidase	-
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8840]	12711	-	-	-	+	-	-	-	-	-	+/-	-	-	-	-	-	-	-	+	-	-	+/-	+/-	+/-	+	+/-	+/-	+/-	-	+/-
[Ref.: #8840]	12710	-	-	-	+	-	+	+	-	-	-	+	-	-	-	-	-	-	+/-	-	-	+/-	+/-	-	+/-	-	-	+/-	-	+/-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121601]	7283	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human gingival crevices

[Ref.: #121601]	Sample type/isolated from	Human, Gingival crevices
[Ref.: #121601]	Isolation date	1992
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence X67150 (>99% sequence identity) for Lancefieldella parvula subclade from Microbeatlas

Aquatic Samples	2818
Soil Samples	2274
Animal Samples	154946
Plant Samples	1009
Total Samples	161047

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8840]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121601]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8840]	A.parvulum 16S rRNA	X67150	1348	GenBank ENA	1382 tax ID
[Ref.: #67770]	Atopobium parvulum gene for 16S ribosomal RNA, partial sequence, strain: JCM 10300	AB558168	1473	GenBank ENA	521095 tax ID
[Ref.: #20218]	Atopobium parvulum 16S ribosomal RNA gene, partial sequence	AF292372	1425	GenBank ENA	521095 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lancefieldella parvula DSM 20469	GCA_000024225	complete	GenBank ENA	521095 tax ID	*
[Ref.: #66792]	Lancefieldella parvulum DSM 20469 SRR9217392-mag-bin.20	GCA_905371835	contig	GenBank ENA	521095 tax ID	*
[Ref.: #66792]	Atopobium parvulum DSM 20469	521095.6	complete	PATRIC	521095 tax ID	*
[Ref.: #66792]	Atopobium parvulum DSM 20469 strain SRR9217392-mag-bin.20	521095.16	wgs	PATRIC	521095 tax ID	*
[Ref.: #66792]	Lancefieldella parvulum DSM 20469	644736327	complete	JGI IMG/M	521095 tax ID	*

[Ref.: #8840]	GC-content	44.0 mol%
[Ref.: #67770]	GC-content	53 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lancefieldella parvulum DSM 20469 DSM 20469 NCBI: GCA_000024225.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lancefieldella parvulum DSM 20469 DSM 20469 NCBI: GCA_000024225.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.441	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	87.192	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.933	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	80.883	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.06	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	95	no

Availability in culture collections External links

[Ref.: #8840]

Culture collection no.

CCUG 32760, CIP 102970, DSM 20469, ATCC 33793, VPI 0546, JCM 10300, KCTC 3663

[Ref.: #72560]

SI-ID 92324

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Antimicrobial activity of Streptococcus salivarius K12 on bacteria involved in oral malodour.	Masdea L, Kulik EM, Hauser-Gerspach I, Ramseier AM, Filippi A, Waltimo T	Arch Oral Biol	10.1016/j.archoralbio.2012.02.011	2012	*

References

#8840

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20469

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36589 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72560

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92324.1 )

#121601 Collection of Institut Pasteur ; Curators of the CIP; CIP 102970
* These data were automatically processed and therefore are not curated

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Lancefieldella parvulum DSM 20469 DSM 20469

Lancefieldella parvulum DSM 20469 DSM 20469

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