Giesbergeria voronezhensis (DSM 12825, CIP 107340, D-419)

Name: Giesbergeria voronezhensis (DSM 12825, CIP 107340, D-419)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2961

Type strain

Strain Designation D-419

Culture col. no. DSM 12825 CIP 107340 D-419 VKM B-2350 CCUG 64015

NCBI tax ID(s) 314200

Special Collections DSMZ CIP Literature strains CCUG

History <- G. A. Dubinina; D-419 (Aquaspirillum voronezhense) CIP <- 2002, DSMZ <- G.A. Dubinina: strain D-419 <- Aquaspirillum voronezhense

Links

Giesbergeria voronezhensis D-419 is an aerobe, Gram-negative, motile bacterium that was isolated from active sludge of waste water aeration tank.

Gram-negative motile rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49373

DSM 12825,CIP 107340,VKM B-2350,CCUG 64015

@ref 20215

Last LPSN update 2026-02-09 11:18:23

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Giesbergeria

Species Giesbergeria voronezhensis

Full scientific name Giesbergeria voronezhensis Grabovich et al. 2006

BacDive ID	Other strains from **Giesbergeria voronezhensis** (1)	Type strain
2962	G. voronezhensis D-420, DSM 12828

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Motility
31673	negative	1.3-2.1 µm	rod-shaped
123884	negative		rod-shaped

Pigmentation

31673

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4840	AQUASPIRILLUM MEDIUM II (DSMZ Medium 1495)	Medium recipe at MediaDive	Name: AQUASPIRILLUM MEDIUM II (DSMZ Medium 1495) Composition: Agar 15.0 g/l Peptone 2.0 g/l Succinic acid 1.0 g/l (NH4)2SO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l CaCl2 x 2 H2O 0.03 g/l EDTA 0.005 g/l FeSO4 x 6 H2O 0.0022 g/l Biotin 0.0002 g/l CoCl2 x 6 H2O 0.0002 g/l Riboflavin 0.0001 g/l ZnSO4 x 7 H2O 0.0001 g/l Pyridoxine hydrochloride 0.0001 g/l Nicotinic acid 5e-05 g/l Thiamine HCl 5e-05 g/l Para-aminobenzoic acid 5e-05 g/l DL-Pantothenic acid 5e-05 g/l MnCl2 x 4 H2O 3e-05 g/l H3BO3 3e-05 g/l CuCl2 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l Folic acid 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water
4840	SPIRILLUM MEDIUM (DSMZ Medium 37)	Medium recipe at MediaDive	Name: SPIRILLUM MEDIUM (DSMZ Medium 37) Composition: Peptone 10.0 g/l (NH4)2SO4 1.0 g/l Succinic acid 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeCl3 x 6 H2O 0.002 g/l MnSO4 x H2O 0.002 g/l Distilled water
40252	MEDIUM 65 - for Prolinoborus fasciculus		Distilled water make up to (1000.000 ml);Manganese II sulphate monohydrate(2.000 mg);Magnesium sulphate heptahydrate (1.000 g);Agar (15.000 g);Ammonium sulphate (1.000 g);Peptone (10.000 g);Succinic acid (1.680 g);Ferric III chloride hexahydrate (2.000mg)
123884	CIP Medium 65	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4840	positive	growth	28
31673	positive	growth	07-36
31673	positive	optimum	30
40252	positive	growth	30
123884	positive	growth	5-30
123884	negative	growth	37
123884	negative	growth	41

Culture pH

@ref	Ability	Type	PH	PH range
31673	positive	optimum	7
31673	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31673	aerobe
123884	microaerophile

Spore formation

31673

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123884	NaCl	positive	growth	0 %
123884	NaCl		growth	2 %
123884	NaCl		growth	4 %
123884	NaCl		growth	6 %
123884	NaCl		growth	8 %
123884	NaCl		growth	10 %

Observation

31673

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31673	30089 ChEBI	acetate	+	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
123884	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
123884	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
31673	15740 ChEBI	formate	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
123884	17234 ChEBI	glucose	-	fermentation
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31673	24996 ChEBI	lactate	+	carbon source
123884	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
31673	25115 ChEBI	malate	+	carbon source
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
123884	17632 ChEBI	nitrate	-	reduction
123884	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
31673	15361 ChEBI	pyruvate	+	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
123884	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123884	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123884	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123884	15688 ChEBI	acetoin	-
123884	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123884	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
123884	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31673	catalase	+	1.11.1.6
123884	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31673	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123884	gamma-glutamyltransferase	-	2.3.2.2
123884	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
123884	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123884	ornithine decarboxylase	-	4.1.1.17
123884	oxidase	+
123884	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
123884	tryptophan deaminase	-
123884	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123884	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123884	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Container (Reservoir)
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4840	active sludge of waste water aeration tank	Voronezh	Russia	RUS	Europe
123884	Environment, Active sludge of waste water aeration tank		Russian Federation	RUS	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4840	1	Risk group (German classification) According to TRBA 466
123884	1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31673	Giesbergeria voronezhensis strain D-419 16S ribosomal RNA gene, partial sequence	AY780905	1479		314200

GC content

31673

GC-content (mol%)58.5-60

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Novel Butane-Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas Field.	Deng Y, Deng C, Yang J, Li B, Wang E, Yuan H.	Front Microbiol	10.3389/fmicb.2018.01576	2018
Phylogeny	Proposal of Giesbergeria voronezhensis gen. nov., sp. nov. and G. kuznetsovii sp. nov. and reclassification of [Aquaspirillum] anulus, [A.] sinuosum and [A.] giesbergeri as Giesbergeria anulus comb. nov., G. sinuosa comb. nov. and G. giesbergeri comb. nov., and [Aquaspirillum] metamorphum and [A.] psychrophilum as Simplicispira metamorpha gen. nov., comb. nov. and S. psychrophila comb. nov.	Grabovich M, Gavrish E, Kuever J, Lysenko AM, Podkopaeva D, Dubinina G	Int J Syst Evol Microbiol	10.1099/ijs.0.64027-0	2006

References

#4840	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12825
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27952	IJSEM 569 2006 ( DOI 10.1099/ijs.0.64027-0 , PubMed 16514029 )
#31673	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27952
#40252	; Curators of the CIP;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#123884	Collection of Institut Pasteur ; Curators of the CIP; CIP 107340
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Giesbergeria voronezhensis (DSM 12825, CIP 107340, D-419)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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