Name: Oceanisphaera donghaensis BL1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 292

Type strain:

Species: Oceanisphaera donghaensis

Strain Designation: BL1

Culture col. no.: DSM 17589, KCTC 12522

Strain history: <- SK Rhee, Chungbuk Natl. Univ.

NCBI tax ID(s): 346183 (species)

SI-ID 397916

DSM 17589

Section

Oceanisphaera donghaensis BL1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Oceanisphaera*
	Species	**Oceanisphaera donghaensis**
	Full Scientific Name (LPSN)	Oceanisphaera donghaensis Park et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31719]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31719]	Cell width	1-1.2 µm

[Ref.: #31719]	Cell shape	rod-shaped

[Ref.: #31719]	Motility	yes

[Ref.: #31719]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7075]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7075]

Culture medium growth

[Ref.: #7075]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7075]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7075]	growth	30 °C
[Ref.: #31719]	growth	04-42 °C
[Ref.: #31719]	optimum	30-42 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #7075]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31719]			optimum	7
[Ref.: #31719]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31719]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31719]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31719]		NaCl		growth	0.5-8	%
[Ref.: #31719]		NaCl		optimum	0.5-8	%

[Ref.: #31719]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31719]	citrate ChEBI	+	carbon source
[Ref.: #31719]	malate ChEBI	+	carbon source
[Ref.: #31719]	nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31719]		catalase	+	1.11.1.6
[Ref.: #31719]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7075]	Sample type/isolated from	marine sediment
[Ref.: #7075]	Geographic location (country and/or sea, region)	East Sea
[Ref.: #7075]	Country	Republic of Korea
[Ref.: #7075]	Country ISO 3 Code	KOR
[Ref.: #7075]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From ocean sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	East Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ190441 (>99% sequence identity) for Oceanisphaera donghaensis from Microbeatlas

Aquatic Samples	148
Soil Samples	14
Animal Samples	27
Plant Samples	6
Total Samples	195

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7075]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7075]	Oceanisphaera donghaensis strain BL1 16S ribosomal RNA gene, partial sequence	DQ190441	1492	ENA	346183 tax ID

[Ref.: #7075]	GC-content	56.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31719]	GC-content	56.6 mol%

Availability in culture collections External links

[Ref.: #7075]

Culture collection no.

DSM 17589, KCTC 12522

[Ref.: #69974]

SI-ID 397916

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanisphaera psychrotolerans sp. nov., isolated from coastal sediment samples.	Zhou S, Wang H, Wang Y, Ma K, He M, Chen X, Kong D, Guo X, Ruan Z, Zhao B	Int J Syst Evol Microbiol	10.1099/ijs.0.000331	2015	*
Phylogeny	Oceanisphaera arctica sp. nov., isolated from Arctic marine sediment, and emended description of the genus Oceanisphaera.	Srinivas TNR, Reddy PVV, Begum Z, Manasa P, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.036475-0	2011	*
Phylogeny	Oceanisphaera ostreae sp. nov., isolated from seawater of an oyster farm, and emended description of the genus Oceanisphaera Romanenko et al. 2003.	Choi WC, Kang SJ, Jung YT, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.029496-0	2011	*
Phylogeny	Oceanisphaera donghaensis sp. nov., a halophilic bacterium from the East Sea, Korea.	Park SJ, Kang CH, Nam YD, Bae JW, Park YH, Quan ZX, Moon DS, Kim HJ, Roh DH, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.64116-0	2006	*

References

#7075

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17589

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31719

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27995 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69974

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397916.1 )

#27995

IJSEM 895 2006 ( DOI 10.1099/ijs.0.64116-0 , PubMed 16585712 )

* These data were automatically processed and therefore are not curated

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