Strain identifier
BacDive ID: 292
Type strain:
Species: Oceanisphaera donghaensis
Strain Designation: BL1
Strain history: <- SK Rhee, Chungbuk Natl. Univ.
NCBI tax ID(s): 346183 (species)
General
@ref: 7075
BacDive-ID: 292
DSM-Number: 17589
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Oceanisphaera donghaensis BL1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 346183
- Matching level: species
strain history
@ref | history |
---|---|
7075 | <- S.-K. Rhee, Chungbuk Natl. Univ., Dept. of Microbiology and Biotechnology Research Institute, Korea; BL1 |
67771 | <- SK Rhee, Chungbuk Natl. Univ. |
doi: 10.13145/bacdive292.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Aeromonadaceae
- genus: Oceanisphaera
- species: Oceanisphaera donghaensis
- full scientific name: Oceanisphaera donghaensis Park et al. 2006
@ref: 7075
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Oceanisphaera
species: Oceanisphaera donghaensis
full scientific name: Oceanisphaera donghaensis Park et al. 2006
strain designation: BL1
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell width | cell shape | motility |
---|---|---|---|---|
31719 | negative | 1-1.2 µm | rod-shaped | yes |
67771 | negative |
pigmentation
- @ref: 31719
- production: yes
Culture and growth conditions
culture medium
- @ref: 7075
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7075 | positive | growth | 30 | mesophilic |
31719 | positive | growth | 04-42 | |
31719 | positive | optimum | 30-42 | |
67771 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
31719 | positive | growth | 7 |
31719 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31719 | aerobe |
67771 | aerobe |
spore formation
- @ref: 31719
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31719 | NaCl | positive | growth | 0.5-8 % |
31719 | NaCl | positive | optimum | 0.5-8 % |
observation
- @ref: 31719
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31719 | 16947 | citrate | + | carbon source |
31719 | 25115 | malate | + | carbon source |
31719 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31719 | catalase | + | 1.11.1.6 |
31719 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
7075 | marine sediment | East Sea | Republic of Korea | KOR | Asia |
67771 | From ocean sediment | East Sea | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_69923.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_6771;97_8105;98_42659;99_69923&stattab=map
- Last taxonomy: Oceanisphaera donghaensis
- 16S sequence: DQ190441
- Sequence Identity:
- Total samples: 195
- soil counts: 14
- aquatic counts: 148
- animal counts: 27
- plant counts: 6
Safety information
risk assessment
- @ref: 7075
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7075
- description: Oceanisphaera donghaensis strain BL1 16S ribosomal RNA gene, partial sequence
- accession: DQ190441
- length: 1492
- database: ena
- NCBI tax ID: 346183
GC content
@ref | GC-content | method |
---|---|---|
7075 | 56.6 | high performance liquid chromatography (HPLC) |
31719 | 56.6 |
External links
@ref: 7075
culture collection no.: DSM 17589, KCTC 12522
straininfo link
- @ref: 69974
- straininfo: 397916
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16585712 | Oceanisphaera donghaensis sp. nov., a halophilic bacterium from the East Sea, Korea. | Park SJ, Kang CH, Nam YD, Bae JW, Park YH, Quan ZX, Moon DS, Kim HJ, Roh DH, Rhee SK | Int J Syst Evol Microbiol | 10.1099/ijs.0.64116-0 | 2006 | Aeromonadaceae/*classification/isolation & purification/physiology, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/metabolism | Genetics |
Phylogeny | 21257693 | Oceanisphaera ostreae sp. nov., isolated from seawater of an oyster farm, and emended description of the genus Oceanisphaera Romanenko et al. 2003. | Choi WC, Kang SJ, Jung YT, Oh TK, Yoon JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.029496-0 | 2011 | Aeromonadaceae/*classification/genetics/*isolation & purification/metabolism, Animals, Aquaculture, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Ostreidae/*growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology | Metabolism |
Phylogeny | 22003041 | Oceanisphaera arctica sp. nov., isolated from Arctic marine sediment, and emended description of the genus Oceanisphaera. | Srinivas TNR, Reddy PVV, Begum Z, Manasa P, Shivaji S | Int J Syst Evol Microbiol | 10.1099/ijs.0.036475-0 | 2011 | Aeromonadaceae/*classification/genetics/isolation & purification, Arctic Regions, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Phylogeny | 25991663 | Oceanisphaera psychrotolerans sp. nov., isolated from coastal sediment samples. | Zhou S, Wang H, Wang Y, Ma K, He M, Chen X, Kong D, Guo X, Ruan Z, Zhao B | Int J Syst Evol Microbiol | 10.1099/ijs.0.000331 | 2015 | Aeromonadaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Temperature, Ubiquinone/chemistry | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
7075 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17589) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17589 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31719 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27995 | 28776041 | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69974 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397916.1 | StrainInfo: A central database for resolving microbial strain identifiers |