Strain identifier

BacDive ID: 292

Type strain: Yes

Species: Oceanisphaera donghaensis

Strain Designation: BL1

Strain history: <- SK Rhee, Chungbuk Natl. Univ.

NCBI tax ID(s): 346183 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7075

BacDive-ID: 292

DSM-Number: 17589

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Oceanisphaera donghaensis BL1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 346183
  • Matching level: species

strain history

@refhistory
7075<- S.-K. Rhee, Chungbuk Natl. Univ., Dept. of Microbiology and Biotechnology Research Institute, Korea; BL1
67771<- SK Rhee, Chungbuk Natl. Univ.

doi: 10.13145/bacdive292.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Oceanisphaera
  • species: Oceanisphaera donghaensis
  • full scientific name: Oceanisphaera donghaensis Park et al. 2006

@ref: 7075

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Oceanisphaera

species: Oceanisphaera donghaensis

full scientific name: Oceanisphaera donghaensis Park et al. 2006

strain designation: BL1

type strain: yes

Morphology

cell morphology

@refgram staincell widthcell shapemotility
31719negative1-1.2 µmrod-shapedyes
67771negative

pigmentation

  • @ref: 31719
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 7075
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7075positivegrowth30mesophilic
31719positivegrowth04-42
31719positiveoptimum30-42
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
31719positivegrowth7
31719positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31719aerobe
67771aerobe

spore formation

  • @ref: 31719
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31719NaClpositivegrowth0.5-8 %
31719NaClpositiveoptimum0.5-8 %

observation

  • @ref: 31719
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3171916947citrate+carbon source
3171925115malate+carbon source
3171917632nitrate+reduction

enzymes

@refvalueactivityec
31719catalase+1.11.1.6
31719cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7075marine sedimentEast SeaRepublic of KoreaKORAsia
67771From ocean sedimentEast SeaRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_69923.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_6771;97_8105;98_42659;99_69923&stattab=map
  • Last taxonomy: Oceanisphaera donghaensis
  • 16S sequence: DQ190441
  • Sequence Identity:
  • Total samples: 195
  • soil counts: 14
  • aquatic counts: 148
  • animal counts: 27
  • plant counts: 6

Safety information

risk assessment

  • @ref: 7075
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7075
  • description: Oceanisphaera donghaensis strain BL1 16S ribosomal RNA gene, partial sequence
  • accession: DQ190441
  • length: 1492
  • database: ena
  • NCBI tax ID: 346183

GC content

@refGC-contentmethod
707556.6high performance liquid chromatography (HPLC)
3171956.6

External links

@ref: 7075

culture collection no.: DSM 17589, KCTC 12522

straininfo link

  • @ref: 69974
  • straininfo: 397916

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16585712Oceanisphaera donghaensis sp. nov., a halophilic bacterium from the East Sea, Korea.Park SJ, Kang CH, Nam YD, Bae JW, Park YH, Quan ZX, Moon DS, Kim HJ, Roh DH, Rhee SKInt J Syst Evol Microbiol10.1099/ijs.0.64116-02006Aeromonadaceae/*classification/isolation & purification/physiology, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/metabolismGenetics
Phylogeny21257693Oceanisphaera ostreae sp. nov., isolated from seawater of an oyster farm, and emended description of the genus Oceanisphaera Romanenko et al. 2003.Choi WC, Kang SJ, Jung YT, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.029496-02011Aeromonadaceae/*classification/genetics/*isolation & purification/metabolism, Animals, Aquaculture, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Ostreidae/*growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiologyMetabolism
Phylogeny22003041Oceanisphaera arctica sp. nov., isolated from Arctic marine sediment, and emended description of the genus Oceanisphaera.Srinivas TNR, Reddy PVV, Begum Z, Manasa P, Shivaji SInt J Syst Evol Microbiol10.1099/ijs.0.036475-02011Aeromonadaceae/*classification/genetics/isolation & purification, Arctic Regions, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny25991663Oceanisphaera psychrotolerans sp. nov., isolated from coastal sediment samples.Zhou S, Wang H, Wang Y, Ma K, He M, Chen X, Kong D, Guo X, Ruan Z, Zhao BInt J Syst Evol Microbiol10.1099/ijs.0.0003312015Aeromonadaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Temperature, Ubiquinone/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7075Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17589)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17589
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31719Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2799528776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69974Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397916.1StrainInfo: A central database for resolving microbial strain identifiers