Name: Clostridium nitrophenolicum DSM 21057
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2847

Type strain:

Species: Clostridium nitrophenolicum

Culture col. no.: DSM 21057, JCM 14030, MTCC 7832

Strain history: R. K. Jain 1D.

NCBI tax ID(s): 382954 (species)

SI-ID 309438

JCM 14030, DSM 21057

Special Collections

Section

Clostridium nitrophenolicum DSM 21057 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from subsurface soil sample.

Gram-positive
motile
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium nitrophenolicum**
	Full Scientific Name (LPSN)	Clostridium nitrophenolicum Suresh et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31891]	Gram stain	positive

[Ref.: #31891]	Cell length	3.5-5 µm

[Ref.: #31891]	Cell width	0.6-0.9 µm

[Ref.: #31891]	Cell shape	rod-shaped

[Ref.: #31891]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31891]	growth	20-45 °C
[Ref.: #31891]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31891]			optimum	7.2
[Ref.: #31891]			growth	6.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15443]	Oxygen tolerance	anaerobe
[Ref.: #31891]	Oxygen tolerance	anaerobe

[Ref.: #31891]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31891]		NaCl		growth	0-1	%
[Ref.: #31891]		NaCl		optimum	0.5	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31891]	fructose ChEBI	+	carbon source
[Ref.: #31891]	fucose ChEBI	+	carbon source
[Ref.: #31891]	galactose ChEBI	+	carbon source
[Ref.: #31891]	galacturonate ChEBI	+	carbon source
[Ref.: #31891]	glucose ChEBI	+	carbon source
[Ref.: #31891]	maltose ChEBI	+	carbon source
[Ref.: #31891]	mannose ChEBI	+	carbon source
[Ref.: #31891]	rhamnose ChEBI	+	carbon source
[Ref.: #31891]	sucrose ChEBI	+	carbon source
[Ref.: #31891]	trehalose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #31891]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #31891]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity
[Ref.: #31891]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15443]	Sample type/isolated from	subsurface soil sample
[Ref.: #15443]	Geographic location (country and/or sea, region)	Hyderabad
[Ref.: #15443]	Country	India
[Ref.: #15443]	Country ISO 3 Code	IND
[Ref.: #15443]	Continent	Asia
[Ref.: #15443]	Geographic location	17.3833°/78.5000°

[Ref.: #67770]	Sample type/isolated from	Subsurface soil sample
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15443]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15443]	Clostridium nitrophenolicum partial 16S rRNA gene, type strain 1DT	AM261414	1461	GenBank ENA	382954 tax ID

[Ref.: #31891]	GC-content	35.5 mol%
[Ref.: #67770]	GC-content	35.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #15443]

Culture collection no.

DSM 21057, JCM 14030, MTCC 7832

[Ref.: #72371]

SI-ID 309438

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium nitrophenolicum sp. nov., a novel anaerobic p-nitrophenol-degrading bacterium, isolated from a subsurface soil sample.	Suresh K, Prakash D, Rastogi N, Jain RK	Int J Syst Evol Microbiol	10.1099/ijs.0.64604-0	2007	*

References

#15443

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21057

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31891

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28150 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#72371

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309438.1 )

#28150

IJSEM 1886 2007 ( DOI 10.1099/ijs.0.64604-0 , PubMed 17684276 )

* These data were automatically processed and therefore are not curated

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