Name: Aeromonas dhakensis A55
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 272

Type strain:

Species: Aeromonas dhakensis

Strain Designation: A55

Culture col. no.: DSM 18362, CECT 7289, LMG 24688, MDC 47

Strain history: <- A. J. Martinez-Murcia, MDC-BT, Alicante; MDC47 <- M. J. Saavedra;

NCBI tax ID(s): 196024 (species)

SI-ID 353994

CECT 7289, DSM 18362, LMG 24688, CCM 7695

Special Collections

Other strains from Aeromonas dhakensis

Section

Aeromonas dhakensis A55 is a facultative aerobe, Gram-negative, motile bacterium that was isolated from water of aquarium of ornamental fish.

Gram-negative
motile
rod-shaped
facultative aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Aeromonas*
	Species	**Aeromonas dhakensis**
	Full Scientific Name (LPSN)	Aeromonas dhakensis (Huys et al. 2002) Beaz-Hidalgo et al. 2015

	Synonym	"Aeromonas* dhakensis"*
	Synonym	Aeromonas aquariorum
	Synonym	Aeromonas hydrophila subsp. dhakensis

Information on morphological and physiological properties Morphology

[Ref.: #32344]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #32344]	Cell shape	rod-shaped

[Ref.: #32344]	Motility	yes

[Ref.: #32344]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7437]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7437]

Culture medium growth

[Ref.: #7437]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7437]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7437]

Culture medium growth

[Ref.: #7437]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7437]	growth	30 °C
[Ref.: #32344]	growth	30-37 °C
[Ref.: #32344]	optimum	33.5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32344]

Oxygen tolerance

facultative aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.231
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32344]		NaCl		growth	0-3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #32344]	lactate ChEBI	+	carbon source
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #32344]	nitrate ChEBI	+	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #32344]	hydrogen sulfide ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #32344]	catalase	+	1.11.1.6
[Ref.: #32344]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #32344]	gelatinase	+
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #7437]	16759	+	+	-	-	-	-	-	-	+	+	+	+	+	-	-	-	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7437]	Sample type/isolated from	water of aquarium of ornamental fish
[Ref.: #7437]	Geographic location (country and/or sea, region)	Maia, Oporto
[Ref.: #7437]	Country	Portugal
[Ref.: #7437]	Country ISO 3 Code	PRT
[Ref.: #7437]	Continent	Europe
[Ref.: #7437]	Geographic location	41.2357°/-8.6199°
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	-
#Host	#Fishes	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU085557 (>99% sequence identity) for Aeromonas from Microbeatlas

Aquatic Samples	400
Soil Samples	45
Animal Samples	595
Plant Samples	47
Total Samples	1087

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7437]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7437]	Aeromonas aquariorum strain MDC47 16S ribosomal RNA gene, partial sequence	EU085557	1503	GenBank ENA	196024 tax ID
[Ref.: #20218]	Aeromonas aquariorum strain CECT 7289 16S ribosomal RNA gene, partial sequence	JX014441	151	GenBank ENA	196024 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aeromonas dhakensis CECT 7289	GCA_000819705	scaffold	GenBank ENA	196024 tax ID	*
[Ref.: #66792]	Aeromonas dhakensis strain CECT 7289	196024.5	wgs	PATRIC	196024 tax ID	*
[Ref.: #66792]	Aeromonas dhakensis CECT 7289	2639762872	draft	JGI IMG/M	196024 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aeromonas dhakensis CECT 7289 NCBI: GCA_000819705.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aeromonas dhakensis CECT 7289 NCBI: GCA_000819705.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.994	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.158	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	74.258	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.231	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	89.161	no

Availability in culture collections External links

[Ref.: #7437]

Culture collection no.

DSM 18362, CECT 7289, LMG 24688, MDC 47

[Ref.: #69954]

SI-ID 353994

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aeromonas aquariorum sp. nov., isolated from aquaria of ornamental fish.	Martinez-Murcia AJ, Saavedra MJ, Mota VR, Maier T, Stackebrandt E, Cousin S	Int J Syst Evol Microbiol	10.1099/ijs.0.65352-0	2008	*
Phylogeny	AQU-1, a chromosomal class C beta-lactamase, among clinical Aeromonas dhakensis isolates: distribution and clinical significance.	Wu CJ, Wang HC, Chen PL, Chang MC, Sunny Sun H, Chou PH, Ko WC	Int J Antimicrob Agents	10.1016/j.ijantimicag.2013.08.002	2013	*

References

#7437

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18362

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32344

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28575 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69954

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID353994.1 )

#28575

IJSEM 1169 2008 ( DOI 10.1099/ijs.0.65352-0 , PubMed 18450708 )

* These data were automatically processed and therefore are not curated

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Aeromonas dhakensis CECT 7289

Aeromonas dhakensis CECT 7289

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