Aeromonas dhakensis P21 is an aerobe, Gram-negative, motile human pathogen that was isolated from faeces of child with diarrhoea.
Gram-negative motile rod-shaped aerobe human pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
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|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Aeromonadales |
| Family Aeromonadaceae |
| Genus Aeromonas |
| Species Aeromonas dhakensis |
| Full scientific name Aeromonas dhakensis (Huys et al. 2002) Beaz-Hidalgo et al. 2015 |
| Synonyms (3) |
| BacDive ID | Other strains from Aeromonas dhakensis (5) | Type strain |
|---|---|---|
| 272 | A. dhakensis A55, DSM 18362, CECT 7289, LMG 24688, MDC ... | |
| 153650 | A. dhakensis CCUG 50491 | |
| 153651 | A. dhakensis CCUG 50492 | |
| 153652 | A. dhakensis CCUG 50493 | |
| 153657 | A. dhakensis CCUG 50511 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7130 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 7130 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 33807 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 120005 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.858 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 120005 | 16947 ChEBI | citrate | + | carbon source | |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 120005 | 17234 ChEBI | glucose | + | fermentation | |
| 120005 | 17234 ChEBI | glucose | + | degradation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | + | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68368 | 30849 ChEBI | L-arabinose | - | fermentation | from API 20E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | - | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 120005 | 17716 ChEBI | lactose | - | fermentation | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 120005 | 15792 ChEBI | malonate | - | assimilation | |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 120005 | 29864 ChEBI | mannitol | + | fermentation | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | - | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | + | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 120005 | 17632 ChEBI | nitrate | + | reduction | |
| 120005 | 16301 ChEBI | nitrite | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 120005 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68371 | 28017 ChEBI | starch | + | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 120005 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 120005 | alcohol dehydrogenase | + | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 120005 | amylase | + | ||
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 120005 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120005 | caseinase | + | 3.4.21.50 | |
| 120005 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | + | 1.9.3.1 | from API 20E |
| 120005 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120005 | gelatinase | + | ||
| 68368 | gelatinase | + | from API 20E | |
| 120005 | lecithinase | + | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 120005 | lipase | + | ||
| 68382 | lipase (C 14) | + | from API zym | |
| 120005 | lysine decarboxylase | + | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120005 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 120005 | oxidase | + | ||
| 120005 | phenylalanine ammonia-lyase | + | 4.3.1.24 | |
| 120005 | protease | + | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 120005 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 120005 | tween esterase | + | ||
| 120005 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7130 | + | + | - | - | - | - | - | - | + | + | + | + | + | - | - | - | + | - | + | - | + | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120005 | not determinedn.d. | + | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | - | - | + | + | - | + | + | + | - | + | - | - | + | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | + | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Infection | #Patient | - | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) | |
| #Host | #Human | #Child |
| @ref | Sample type | Host species | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|---|
| 7130 | faeces of child with diarrhoea | Homo sapiens | Dhaka | Bangladesh | BGD | Asia | 23.7104 | 90.4074 23.7104/90.4074 | |
| 56751 | Human feces,child with diarrhea | Homo sapiens | Bangladesh | BGD | Asia | ||||
| 120005 | Human, Feces | Homo sapiens | Bangladesh | BGD | Asia |
Global distribution of 16S sequence AM262157 (>99% sequence identity) for Aeromonas from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | PRJEB7048 assembly for Aeromonas dhakensis CIP 107500 | scaffold | 196024 | 63.51 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate anaerobe | 64.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.78 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 81.38 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.86 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.99 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.68 | yes |
| 125438 | aerobic | aerobicⓘ | no | 72.06 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.73 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 89.12 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Characterization of the relationship between polar and lateral flagellar genes in clinical Aeromonas dhakensis: phenotypic, genetic and biochemical analyses. | Lau TV, Puah SM, Tan JMA, Puthucheary SD, Chua KH. | Braz J Microbiol | 10.1007/s42770-021-00457-8 | 2021 | ||
| Complete genome sequence of a metallo-beta-lactamase-producing Aeromonas dhakensis strain, RYU-Ah62, isolated from a patient with an abdominal abscess. | Nishiyama N, Uechi K, Arakaki W, Utsumi D, Sato Y, Nakamatsu M, Kinjo T, Yamamoto K. | Microbiol Resour Announc | 10.1128/mra.00010-24 | 2024 | ||
| Genome Sequence of OXA-726-Encoding Aeromonas dhakensis Igbk (Sequence Type 1171) from an Edible Snail Traded in Nigeria. | Okafor AC, Ogbo FC, Cabal Rosel A, Stoger A, Akharaiyi FC, Prieto B, Allerberger F, Ruppitsch W. | Microbiol Resour Announc | 10.1128/mra.00343-22 | 2022 | ||
| Genetics | Draft genome sequence of myo-inositol utilizing Aeromonas dhakensis 1P11S3 isolated from striped catfish (Pangasianodon hypopthalmus) in a local fish farm in Malaysia. | Azzam-Sayuti M, Ina-Salwany MY, Zamri-Saad M, Annas S, Liles MR, Xu T, Amal MNA, Yusof MT. | Data Brief | 10.1016/j.dib.2022.107974 | 2022 | |
| Metabolism | In silico comparative analysis of Aeromonas Type VI Secretion System. | Moriel B, de Campos Prediger K, de Souza EM, Pedrosa FO, Fadel-Picheth CMT, Cruz LM. | Braz J Microbiol | 10.1007/s42770-020-00405-y | 2021 | |
| Aeromonas dhakensis, an Increasingly Recognized Human Pathogen. | Chen PL, Lamy B, Ko WC. | Front Microbiol | 10.3389/fmicb.2016.00793 | 2016 | ||
| Genetics | Whole genome sequence analysis of Aeromonas spp. isolated from ready-to-eat seafood: antimicrobial resistance and virulence factors. | Lee HJ, Storesund JE, Lunestad BT, Hoel S, Lerfall J, Jakobsen AN. | Front Microbiol | 10.3389/fmicb.2023.1175304 | 2023 | |
| Phylogeny | Matrix-assisted laser desorption ionization-time of flight mass spectrometry can accurately differentiate Aeromonas dhakensis from A. hydrophila, A. caviae, and A. veronii. | Chen PL, Lee TF, Wu CJ, Teng SH, Teng LJ, Ko WC, Hsueh PR. | J Clin Microbiol | 10.1128/jcm.01025-14 | 2014 | |
| Phylogeny | AQU-1, a chromosomal class C beta-lactamase, among clinical Aeromonas dhakensis isolates: distribution and clinical significance. | Wu CJ, Wang HC, Chen PL, Chang MC, Sunny Sun H, Chou PH, Ko WC | Int J Antimicrob Agents | 10.1016/j.ijantimicag.2013.08.002 | 2013 | |
| Aeromonas caviae subsp. aquatica subsp. nov., a New Multidrug-Resistant Subspecies Isolated from a Drinking Water Storage Tank. | Moreira VH, Berbert LC, Adesoji AT, Bianco K, Cavalcante JJV, Pellegrino FLPC, Albano RM, Clementino MM, Cardoso AM. | Microorganisms | 10.3390/microorganisms13040897 | 2025 |
| #7130 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17689 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #33807 | ; Curators of the CIP; |
| #56751 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45377 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120005 | Collection of Institut Pasteur ; Curators of the CIP; CIP 107500 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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