Name: Clostridium scatologenes DSM 757
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2665

Type strain:

Species: Clostridium scatologenes

Culture col. no.: DSM 757, ATCC 25775, NCIMB 8855, VPI 5393, JCM 1414, BCRC 14540, CCUG 9283, NCTC 12992

Strain history: ATCC 25775 <-- L. DS. Smith VPI 5393.

NCBI tax ID(s): 1548 (species)

SI-ID 44728

ATCC 25775, NCIB 8855, CCUG 9283, DSM 757, JCM 1414, CCRC 14540, NCIMB 8855, NCIMB10622, NCTC9800, NCTC 12992, BCRC 14540

Special Collections

Section

Clostridium scatologenes DSM 757 is an anaerobe, spore-forming human pathogen of the family Clostridiaceae.

spore-forming
anaerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium scatologenes**
	Full Scientific Name (LPSN)	Clostridium scatologenes (Weinberg and Ginsbourg 1927) Prévot 1948 (Approved Lists 1980)

Synonym

"Bacillus scatologenes"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #429]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #429]

Culture medium growth

[Ref.: #429]

Culture medium link

Medium recipe at MediaDive

[Ref.: #429]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #429]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #429]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #429]	Geographic location (country and/or sea, region)	Country of origin unknown
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC007109 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	4051
Soil Samples	5169
Animal Samples	2029
Plant Samples	793
Total Samples	12042

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #429]	Pathogenicity (human)	yes, in single cases
[Ref.: #429]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #429]	Clostridium scatologenes strain ATCC 25775 16S ribosomal RNA, partial sequence	NR_118727	1460	GenBank ENA	1548 tax ID
[Ref.: #67770]	Clostridium scatologenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 1414	LC007109	1473	GenBank ENA	1548 tax ID
[Ref.: #20218]	Clostridium scatologenes strain ATCC 25775 16S ribosomal RNA gene, complete sequence	M59104	1460	GenBank ENA	1548 tax ID	*
[Ref.: #20218]	Clostridium scatologenes strain DSM 757 16S ribosomal RNA gene, partial sequence	DQ911270	320	GenBank ENA	1548 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium scatologenes ATCC 25775	GCA_000632785	scaffold	GenBank ENA	1548 tax ID
[Ref.: #66792]	Clostridium scatologenes ATCC 25775	GCA_000968375	complete	GenBank ENA	1548 tax ID	*
[Ref.: #66792]	Clostridium scatologenes strain ATCC 25775	1548.3	wgs	PATRIC	1548 tax ID	*
[Ref.: #66792]	Clostridium scatologenes ATCC 25775	2627854033	complete	JGI IMG/M	1548 tax ID	*
[Ref.: #66792]	Clostridium scatologenes ATCC 25775	2579778644	draft	JGI IMG/M	1548 tax ID	*

[Ref.: #429]	GC-content	27.0 mol%
[Ref.: #67770]	GC-content	27 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium scatologenes ATCC 25775 NCBI: GCA_000968375.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	89	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium scatologenes ATCC 25775 NCBI: GCA_000968375.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	55.847	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	82.359	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.15	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	81.332	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.065	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.463	no

Availability in culture collections External links

[Ref.: #429]

Culture collection no.

DSM 757, ATCC 25775, NCIMB 8855, VPI 5393, JCM 1414, BCRC 14540, CCUG 9283, NCTC 12992

[Ref.: #72194]

SI-ID 44728

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium muellerianum sp. nov., a carbon monoxide-oxidizing acetogen isolated from old hay.	Doyle DA, Smith PR, Lawson PA, Tanner RS	Int J Syst Evol Microbiol	10.1099/ijsem.0.005297	2022	*
Genetics	Complete genome sequence of a malodorant-producing acetogen, Clostridium scatologenes ATCC 25775(T).	Zhu Z, Guo T, Zheng H, Song T, Ouyang P, Xie J	J Biotechnol	10.1016/j.jbiotec.2015.07.013	2015	*
Genetics	Draft Genome Sequence of Clostridium scatologenes ATCC 25775, a Chemolithoautotrophic Acetogenic Bacterium Producing 3-Methylindole and 4-Methylphenol.	Song Y, Jeong Y, Shin HS, Cho BK	Genome Announc	10.1128/genomeA.00459-14	2014	*
Metabolism	Development of a defined medium for Clostridium scatologenes ATCC 25775.	Kridelbaugh D, Doerner KC	Lett Appl Microbiol	10.1111/j.1472-765X.2008.02546.x	2009	*
Metabolism	Fe(III) stimulates 3-methylindole and 4-methylphenol production in swine lagoon enrichments and Clostridium scatologenes ATCC 25775.	Doerner KC, Mason BP, Kridelbaugh D, Loughrin J	Lett Appl Microbiol	10.1111/j.1472-765X.2008.02500.x	2008	*
Metabolism	3-Methylindole production is regulated in Clostridium scatologenes ATCC 25775.	Doerner KC, Cook KL, Mason BP	Lett Appl Microbiol	10.1111/j.1472-765X.2008.02502.x	2008	*
Phylogeny	Clostridium nitrophenolicum sp. nov., a novel anaerobic p-nitrophenol-degrading bacterium, isolated from a subsurface soil sample.	Suresh K, Prakash D, Rastogi N, Jain RK	Int J Syst Evol Microbiol	10.1099/ijs.0.64604-0	2007	*
Phylogeny	Clostridium carboxidivorans sp. nov., a solvent-producing clostridium isolated from an agricultural settling lagoon, and reclassification of the acetogen Clostridium scatologenes strain SL1 as Clostridium drakei sp. nov.	Liou JS, Balkwill DL, Drake GR, Tanner RS	Int J Syst Evol Microbiol	10.1099/ijs.0.63482-0	2005	*
Metabolism	Clostridium scatologenes strain SL1 isolated as an acetogenic bacterium from acidic sediments.	Kusel K, Dorsch T, Acker G, Stackebrandt E, Drake HL	Int J Syst Evol Microbiol	10.1099/00207713-50-2-537	2000	*

References

#429	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 757

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72194

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44728.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Clostridium scatologenes in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Clostridium scatologenes ATCC 25775

Clostridium scatologenes ATCC 25775

Change proposal

Change proposal