Name: Paeniclostridium sordellii 211
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2666

Type strain:

Species: Paeniclostridium sordellii

Strain Designation: 211

Culture col. no.: DSM 2141, ATCC 9714, NCIB 10717, CCUG 9284, LMG 15708, CIP 103658, BCRC 10649, JCM 3814, NCIMB 10717

Strain history: CIP <- 1997, J.P. Carlier, Inst. Pasteur, Paris, France: strain

NCBI tax ID(s): 1292036 (strain), 1505 (species)

SI-ID 92518

LMG 15708, ATCC 9714, CCRC 10649, CCUG 9284, CIP 103658, DSM 2141, JCM 3814, NCIMB 10717, NCIB 10717, BCRC 10649, ACM 4742, VTT E-042446

Special Collections

Other strains from Paeniclostridium sordellii

Section

When using BacDive for research please cite our paper

Paeniclostridium sordellii 211 is an anaerobe, spore-forming, mesophilic human pathogen that was isolated from Environment, Spore appendages.

Gram-positive
rod-shaped
spore-forming
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptostreptococcaceae*
	Genus	*Paeniclostridium*
	Species	**Paeniclostridium sordellii**
	Full Scientific Name (LPSN)	Paeniclostridium sordellii (Hall and Scott 1927) Sasi Jyothsna et al. 2016

	Synonym	Paraclostridium sordellii
	Synonym	Clostridium sordellii
	Synonym	"Bacillus* sordelli"*

Information on morphological and physiological properties Morphology

[Ref.: #122681]	Gram stain	positive

[Ref.: #122681]	Cell shape	rod-shaped

[Ref.: #122681]	Motility	no

[Ref.: #122681]	Hemolysis ability	1

[Ref.: #45183]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #976]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #976]

Culture medium growth

[Ref.: #976]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #976]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #976]

Culture medium growth

[Ref.: #976]

Culture medium link

Medium recipe at MediaDive

[Ref.: #976]

Culture medium composition

expand / minimize

[Ref.: #38141]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #38141]

Culture medium growth

[Ref.: #38141]

Culture medium composition

expand / minimize

[Ref.: #122681]

Culture medium

CIP Medium 6

[Ref.: #122681]

Culture medium growth

[Ref.: #122681]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122681]

Culture medium

CIP Medium 20

[Ref.: #122681]

Culture medium growth

[Ref.: #122681]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #976]	growth	37 °C
[Ref.: #38141]	growth	37 °C
[Ref.: #45183]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #122681]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #976]	Oxygen tolerance	anaerobe
[Ref.: #45183]	Oxygen tolerance	anaerobe
[Ref.: #45183]	Oxygen tolerance	obligate anaerobe
[Ref.: #122681]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	facultative anaerobe Confidence in %96.1

[Ref.: #122681]

Ability of spore formation

yes

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #122681]	cellobiose ChEBI	-	degradation
[Ref.: #122681]	D-arabinose ChEBI	-	degradation
[Ref.: #122681]	D-fructose ChEBI	+	degradation
[Ref.: #122681]	D-glucose ChEBI	+	degradation
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #122681]	D-xylose ChEBI	-	degradation
[Ref.: #122681]	esculin ChEBI	+	hydrolysis
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #122681]	lactose ChEBI	+	degradation
[Ref.: #122681]	maltose ChEBI	+	degradation
[Ref.: #122681]	nitrate ChEBI	-	reduction
[Ref.: #122681]	nitrate ChEBI	+	respiration
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #122681]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #122681]	salicin ChEBI	-	degradation
[Ref.: #122681]	sucrose ChEBI	+	degradation
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	+	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122681]		indole ChEBI	yes
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122681]	amylase	+
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #122681]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API rID32A
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #122681]	caseinase	+	3.4.21.50
[Ref.: #122681]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122681]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122681]	gelatinase	+/-
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #122681]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #122681]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122681]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #122681]	protease	-
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #122681]	tween esterase	-
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #122681]	urease	+	3.5.1.5
[Ref.: #68380]	urease	+	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #976]	14835	+	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	-	+	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122681]	7617	-	+	+	+	-	-	-	-	+	-	+	+	+	+	-	+	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	metabolism of amino sugars and derivatives	100	5 of 5
[Ref.: #66794]	phenylmercury acetate degradation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	aminopropanol phosphate biosynthesis	100	2 of 2
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	purine metabolism	80.85	76 of 94
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	vitamin B12 metabolism	79.41	27 of 34
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	66.67	6 of 9
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	NAD metabolism	61.11	11 of 18
[Ref.: #66794]	glutamate and glutamine metabolism	60.71	17 of 28
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	threonine metabolism	60	6 of 10
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	Entner Doudoroff pathway	60	6 of 10
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	oxidative phosphorylation	56.04	51 of 91
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	valine metabolism	55.56	5 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	phenylalanine metabolism	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	50	13 of 26
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	propionate fermentation	50	5 of 10
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	lipid metabolism	48.39	15 of 31
[Ref.: #66794]	histidine metabolism	48.28	14 of 29
[Ref.: #66794]	tryptophan metabolism	47.37	18 of 38
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	pentose phosphate pathway	45.45	5 of 11
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	lysine metabolism	42.86	18 of 42
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	degradation of sugar acids	40	10 of 25
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	leucine metabolism	38.46	5 of 13
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	vitamin B6 metabolism	27.27	3 of 11
[Ref.: #66794]	degradation of sugar alcohols	25	4 of 16
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
[Ref.: #66794]	glutathione metabolism	21.43	3 of 14
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #122681]	Sample type/isolated from	Environment, Spore appendages
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB550230 (>99% sequence identity) for Paeniclostridium sordellii from Microbeatlas

Aquatic Samples	4522
Soil Samples	4480
Animal Samples	35570
Plant Samples	2044
Total Samples	46616

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #976]	Pathogenicity (human)	yes
[Ref.: #976]	Pathogenicity (animal)	yes
[Ref.: #976]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122681]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #976]	[Clostridium] sordellii gene for 16S rRNA, partial sequence, strain: JCM 3814	AB550230	1463	GenBank ENA	1505 tax ID
[Ref.: #20218]	Clostridium sordellii 16S ribosomal RNA	M59105	1454	GenBank ENA	1505 tax ID	*
[Ref.: #124043]	Clostridium sordellii genes for 16S rRNA, 16S-23S rRNA spacer region (rrn1), 23S rRNA, partial sequence.	AB040731	235	GenBank ENA	1505 tax ID	*
[Ref.: #124043]	Clostridium sordellii genes for 16S rRNA, 16S-23S rRNA spacer region (rrn2), 23S rRNA, partial sequence.	AB040732	292	GenBank ENA	1505 tax ID	*
[Ref.: #124043]	Clostridium sordellii genes for 16S rRNA, 16S-23S rRNA spacer region (rrn3), 23S rRNA, partial sequence.	AB040733	294	GenBank ENA	1505 tax ID	*
[Ref.: #124043]	Clostridium sordellii genes for 16S rRNA, tRNA-Ala, 23S rRNA, partial and complete sequence.	AB040734	323	GenBank ENA	1505 tax ID	*
[Ref.: #124043]	Clostridium sordellii genes for 16S rRNA, 16S-23S rRNA spacer region (rrn5), 23S rRNA, partial sequence.	AB040735	341	GenBank ENA	1505 tax ID	*
[Ref.: #124043]	Clostridium sordellii gene for 16S rRNA, partial sequence, strain: ATCC 9714.	AB075771	1461	GenBank ENA	1505 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paeniclostridium sordellii ATCC 9714	2563367177	draft	JGI IMG/M	1292036 tax ID	*
[Ref.: #66792]	Paeniclostridium sordellii ATCC 9714	GCA_000444075	contig	GenBank ENA	1292036 tax ID	*
[Ref.: #66792]	[Clostridium] sordellii strain ATCC9714	1505.8	complete	PATRIC	1505 tax ID	*
[Ref.: #66792]	[Clostridium] sordellii strain JGS6382	1505.7	complete	PATRIC	1505 tax ID	*
[Ref.: #66792]	Clostridium sordellii ATCC 9714	1292036.3	wgs	PATRIC	1292036 tax ID	*
[Ref.: #66792]	Paeniclostridium sordellii strain JGS6364	1505.66	wgs	PATRIC	1505 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: [Clostridium] sordellii strain ATCC9714 PATRIC: 1505.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	96.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	82.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	76.6
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	68.7

Availability in culture collections External links

[Ref.: #976]

Culture collection no.

DSM 2141, ATCC 9714, NCIB 10717, CCUG 9284, LMG 15708, CIP 103658, BCRC 10649, JCM 3814, NCIMB 10717

[Ref.: #72195]

SI-ID 92518

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Pathogenicity	The Sialidase NanS Enhances Non-TcsL Mediated Cytotoxicity of Clostridium sordellii.	Awad MM, Singleton J, Lyras D	Toxins (Basel)	10.3390/toxins8060189	2016	*
Metabolism	A novel murine model of Clostridium sordellii myonecrosis: Insights into the pathogenesis of disease.	Aldape MJ, Bayer CR, Bryant AE, Stevens DL	Anaerobe	10.1016/j.anaerobe.2016.01.004	2016	*
Phylogeny	Paraclostridium benzoelyticum gen. nov., sp. nov., isolated from marine sediment and reclassification of Clostridium bifermentans as Paraclostridium bifermentans comb. nov. Proposal of a new genus Paeniclostridium gen. nov. to accommodate Clostridium sordellii and Clostridium ghonii.	Sasi Jyothsna TS, Tushar L, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.000874	2016	*
Phylogeny	Clostridium sordellii genome analysis reveals plasmid localized toxin genes encoded within pathogenicity loci.	Couchman EC, Browne HP, Dunn M, Lawley TD, Songer JG, Hall V, Petrovska L, Vidor C, Awad M, Lyras D, Fairweather NF	BMC Genomics	10.1186/s12864-015-1613-2	2015	*
Metabolism	Identification and characterization of Clostridium sordellii toxin gene regulator.	Sirigi Reddy AR, Girinathan BP, Zapotocny R, Govind R	J Bacteriol	10.1128/JB.00711-13	2013	*
Pathogenicity	TcsL is an essential virulence factor in Clostridium sordellii ATCC 9714.	Carter GP, Awad MM, Hao Y, Thelen T, Bergin IL, Howarth PM, Seemann T, Rood JI, Aronoff DM, Lyras D	Infect Immun	10.1128/IAI.00968-10	2011	*
Proteome	Comparative analysis of the extracellular proteomes of two Clostridium sordellii strains exhibiting contrasting virulence.	Kachman MT, Hurley MC, Thiele T, Srinivas G, Aronoff DM	Anaerobe	10.1016/j.anaerobe.2010.03.004	2010	*
Stress	Heat resistance of Clostridium sordellii spores.	Kozma-Sipos Z, Szigeti J, Asvanyi B, Varga L	Anaerobe	10.1016/j.anaerobe.2010.01.002	2010	*
Pathogenicity	Lethal toxin is a critical determinant of rapid mortality in rodent models of Clostridium sordellii endometritis.	Hao Y, Senn T, Opp JS, Young VB, Thiele T, Srinivas G, Huang SK, Aronoff DM	Anaerobe	10.1016/j.anaerobe.2009.06.002	2009	*
Enzymology	Characterization and regulation of the NADP-linked 7 alpha-hydroxysteroid dehydrogenase gene from Clostridium sordellii.	Coleman JP, Hudson LL, Adams MJ	J Bacteriol	10.1128/jb.176.16.4865-4874.1994	1994	*
Phylogeny	16S ribosomal DNA sequences of anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov.	Ezaki T, Li N, Hashimoto Y, Miura H, Yamamoto H	Int J Syst Bacteriol	10.1099/00207713-44-1-130	1994	*
Phenotype	Correlative properties for a differentiation of two Clostridium sordellii phenotypes and their distinction from Clostridium bifermentans.	Roggentin P, Gutschker-Gdaniec G, Schauer R, Hobrecht R	Zentralbl Bakteriol Mikrobiol Hyg A	10.1016/s0176-6724(85)80020-1	1985	*
	Clostridium sordellii Pathogenicity Locus Plasmid pCS1-1 Encodes a Novel Clostridial Conjugation Locus.	Vidor CJ, Watts TD, Adams V, Bulach D, Couchman E, Rood JI, Fairweather NF, Awad M, Lyras D	mBio	10.1128/mBio.01761-17	2018	*
	Experimental identification and computational characterization of a novel extracellular metalloproteinase produced by Clostridium sordellii.	Aldape MJ, Tao A, Heeney DD, McIndoo ER, French JM, Xu D	RSC Adv	10.1039/c6ra27654g	2017	*

References

#976	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2141

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38141 ; Curators of the CIP;
#45183 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 9284

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72195

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92518.1 )

#122681 Collection of Institut Pasteur ; Curators of the CIP; CIP 103658

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paeniclostridium sordellii in external resources:
SILVA
BRENDA
PANGAEA
GBIF

[Clostridium] sordellii strain ATCC9714

Change proposal

Change proposal