Hathewaya proteolytica (DSM 3090, ATCC 49002, CG)

Name: Hathewaya proteolytica (DSM 3090, ATCC 49002, CG)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2648

Type strain

Strain Designation CG

Culture col. no. DSM 3090 ATCC 49002 CG

NCBI tax ID(s) 1121331 29365

Special Collections DSMZ Literature strains

Links

Hathewaya proteolytica CG is an anaerobe, spore-forming, mesophilic prokaryote that forms circular colonies and was isolated from chicken manure digester.

spore-forming Gram-positive rod-shaped colony-forming anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 42239

ATCC 49002,DSM 3090,BCRC 14533,CCRC 14533

@ref 20215

Last LPSN update 2025-12-16 09:47:21

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Hathewaya

Species Hathewaya proteolytica

Full scientific name Hathewaya proteolytica (Jain and Zeikus 1988) Lawson and Rainey 2016

Synonyms (1)

Clostridium proteolyticum

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43779	positive	2.2 µm	0.5 µm	rod-shaped

Colony morphology

@ref	Type of hemolysis	Colony size	Colony color	Colony shape
43779	gamma	1.5 mm	Off-white	circular

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1296	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1296	positive	growth	37	mesophilic
43779	positive	optimum	30-37	mesophilic

Culture pH

@ref	Ability	Type	PH
43779	positive	optimum	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
1296	anaerobe
43779	obligate anaerobe
125438	anaerobe
125439	anaerobe

Spore formation

43779

Spore formationyes

Metabolite utilization

@ref	Metabolite	Utilization activity	Kind of utilization tested
43779	casein	+/-	growth
43779	collagen	+	assimilation
43779	gelatin	+	assimilation
43779	meat extract	+	assimilation
43779	peptone	+	assimilation

Antibiotic resistance

@ref	ChEBI	Metabolite	Is antibiotic	Is sensitive	Sensitivity conc.
43779	17334	penicillin			100 µg/mL
43779	17076	streptomycin			100 µg/mL

Metabolite production

@ref	Chebi-ID	Metabolite
43779	18276 ChEBI	dihydrogen
43779	16236 ChEBI	ethanol
43779	48944 ChEBI	isobutyrate
43779	48942 ChEBI	isovalerate

Enzymes

@ref	Value	Activity	Ec
43779	catalase	-	1.11.1.6
43779	cytochrome oxidase	-	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	chorismate metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	vitamin B1 metabolism	84.62	11 of 13
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	vitamin B12 metabolism	82.35	28 of 34
66794	lipoate biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	sulfopterin metabolism	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	pyrimidine metabolism	73.33	33 of 45
66794	flavin biosynthesis	73.33	11 of 15
66794	glycolysis	70.59	12 of 17
66794	purine metabolism	70.21	66 of 94
66794	phenylalanine metabolism	69.23	9 of 13
66794	d-mannose degradation	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glutamate and glutamine metabolism	60.71	17 of 28
66794	hydrogen production	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	oxidative phosphorylation	59.34	54 of 91
66794	histidine metabolism	58.62	17 of 29
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	serine metabolism	55.56	5 of 9
66794	proline metabolism	54.55	6 of 11
66794	methionine metabolism	53.85	14 of 26
66794	gluconeogenesis	50	4 of 8
66794	non-pathway related	50	19 of 38
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	starch degradation	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	butanoate fermentation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	d-xylose degradation	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	tryptophan metabolism	44.74	17 of 38
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	degradation of sugar alcohols	43.75	7 of 16
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	tyrosine metabolism	42.86	6 of 14
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	lipid metabolism	41.94	13 of 31
66794	alanine metabolism	41.38	12 of 29
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	methylglyoxal degradation	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	cysteine metabolism	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	lysine metabolism	38.1	16 of 42
66794	isoleucine metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	pentose phosphate pathway	36.36	4 of 11
66794	citric acid cycle	35.71	5 of 14
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	valine metabolism	33.33	3 of 9
66794	enterobactin biosynthesis	33.33	1 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	lipid A biosynthesis	33.33	3 of 9
66794	degradation of hexoses	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	leucine metabolism	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	arginine metabolism	29.17	7 of 24
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	glutathione metabolism	28.57	4 of 14
66794	ascorbate metabolism	27.27	6 of 22
66794	polyamine pathway	26.09	6 of 23
66794	CMP-KDO biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	urea cycle	23.08	3 of 13
66794	degradation of pentoses	21.43	6 of 28

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
1296	chicken manure digester	Wisconsin, Madison	USA	USA	North America
43779	Chicken manure

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1296	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2585428174 annotated assembly for Hathewaya proteolytica DSM 3090	scaffold	GCA_900142225	1121331.3	2585428174	1121331	67.38

Genome browser: GCA_900142225

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
1296	Clostridium proteolyticum 16S rRNA gene, strain DSM 3090	X73448	1506		29365

GC content

@ref	GC-content (mol%)	Method
1296	29.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hathewaya proteolytica DSM 3090
NCBI: GCA_900142225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	81.70	no
125439	motility	BacteriaNetⓘ	yes	78.30	no
125439	gram_stain	BacteriaNetⓘ	variable	77.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hathewaya proteolytica DSM 3090 DSM 3090
NCBI: GCA_900142225.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	70.46	yes
125438	anaerobic	anaerobicⓘ	yes	94.38	no
125438	aerobic	aerobicⓘ	no	96.78	no
125438	spore-forming	spore-formingⓘ	yes	70.84	yes
125438	thermophilic	thermophileⓘ	no	85.21	yes
125438	flagellated	motile2+ⓘ	yes	73.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanirhabdus sediminicola gen. nov., sp. nov., an anaerobic bacterium isolated from sea sediment.	Pi RX, Zhang WW, Fang MX, Zhang YZ, Li TT, Wu M, Zhu XF	Int J Syst Evol Microbiol	10.1099/ijs.0.051243-0	2013

References

#1296	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3090
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43779	Paul A. Lawson, Fred A. Rainey: Proposal to restrict the genus Clostridium Prazmowski to Clostridium butyricum and related species. IJSEM 66: 1009 - 1016 2016 ( DOI 10.1099/ijsem.0.000824 , PubMed 26643615 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Hathewaya proteolytica (DSM 3090, ATCC 49002, CG)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900142225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media