Anaerotignum propionicum (DSM 1682, ATCC 25522, NCIMB 10656)

Name: Anaerotignum propionicum (DSM 1682, ATCC 25522, NCIMB 10656)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2646

Type strain

Strain Designation X2

Culture col. no. DSM 1682 ATCC 25522 NCIMB 10656 CCUG 9280 JCM 1430 2 more

NCBI tax ID(s) 991789 28446

Special Collections DSMZ CCUG JCM Literature strains

History <- ATCC <- L. DS. Smith; VPI 5303 <- J. M. Poston, National Institute of Health, Bethesda, Md., USA <- E. R. Stadtman <- H. A. Barker, University of California, Berkeley, USA; X2 {1942} ATCC 25522 <-- L. DS. Smith VPI 5303 <-- M. Poston <-- E. Stadtman <-- H. Barker X2.

Links

Anaerotignum propionicum X2 is an anaerobe, chemoorganotroph, spore-forming bacterium that was isolated from black mud.

spore-forming Gram-positive motile rod-shaped anaerobe chemoorganotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 38577

ATCC 25522,DSM 1682,CCUG 9280,NCIB 10656,JCM 1430,NCIMB 10656

@ref 20215

Last LPSN update 2026-02-09 11:18:19

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Anaerotignum

Species Anaerotignum propionicum

Full scientific name Anaerotignum propionicum (Cardon and Barker 1946) Ueki et al. 2017

Synonyms (2)

"Tyzzerella propionica"
Clostridium propionicum

BacDive ID	Other strains from **Anaerotignum propionicum** (1)	Type strain
2647	A. propionicum 19acry 3, DSM 6251

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43524	positive	1.3-5 µm	0.5-0.8 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
856	ANAEROTIGNUM MEDIUM (DSMZ Medium 156)		Medium recipe at MediaDive	Name: ANAEROTIGNUM MEDIUM (DSMZ Medium 156) Composition: Yeast extract 4.0 g/l L-Alanine 3.0 g/l Peptone 3.0 g/l NaHCO3 1.0 g/l L-Cysteine HCl x H2O 0.3 g/l MgSO4 x 7 H2O 0.1 g/l FeSO4 x 7 H2O 0.018 g/l Sodium resazurin 0.0005 g/l Potassium phosphate buffer CaSO4 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
856	positive	growth	35
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
856	anaerobe
43524	obligate anaerobe
125439	anaerobe	98.4

Nutrition type

43524

Typechemoorganotroph

Spore formation

43524

Spore formationyes

Compound production

856

Compoundacrylic acid

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43524	16236 ChEBI	ethanol	+/-	assimilation
43524	17234 ChEBI	glucose	-	assimilation
43524	16977 ChEBI	L-alanine	+	assimilation
43524	17191 ChEBI	L-isoleucine	+	assimilation
43524	15603 ChEBI	L-leucine	+	assimilation
43524	17115 ChEBI	L-serine	+	assimilation
43524	16857 ChEBI	L-threonine	+	assimilation
43524	16414 ChEBI	L-valine	+	assimilation
43524	18222 ChEBI	xylose	-	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite
43524	30089 ChEBI	acetate
43524	17968 ChEBI	butyrate
43524	48944 ChEBI	isobutyrate
43524	48942 ChEBI	isovalerate
43524	17272 ChEBI	propionate

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
856	black mud	California, San Francisco Bay	USA	USA	North America
43524	black mud
45180	Mud
67770	Black mud from San Francisco Bay	CA	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AB649276 (>99% sequence identity) for Anaerotignum from Microbeatlas

Aquatic Samples	241
Soil Samples	79
Animal Samples	2798
Plant Samples	61
Total Samples	3179

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
856	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM156195v1 assembly for Anaerotignum propionicum DSM 1682 X2	complete	GCA_001561955	991789.25	2808606817	991789	97.79
66792	IMG-taxon 2582581271 annotated assembly for Anaerotignum propionicum DSM 1682	scaffold	GCA_900129165	991789.4	2582581271	991789	71.33

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
856	Clostridium propionicum 16S rRNA gene, strain DSM 1682	X77841	1527		991789
67770	Clostridium propionicum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1430	AB649276	1495		28446

GC content

@ref	GC-content (mol%)	Method
43524	36	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Anaerotignum propionicum DSM 1682 strain X2
PATRIC: 991789.25

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	70.40	no
125439	motility	BacteriaNetⓘ	yes	76.30	no
125439	gram_stain	BacteriaNetⓘ	variable	78.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerotignum propionicum DSM 1682 X2
NCBI: GCA_001561955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.67	no
125438	anaerobic	anaerobicⓘ	yes	82.73	yes
125438	aerobic	aerobicⓘ	no	90.42	yes
125438	spore-forming	spore-formingⓘ	yes	64.23	yes
125438	thermophilic	thermophileⓘ	no	85.58	yes
125438	flagellated	motile2+ⓘ	yes	67.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	New Insights into the Physiology of the Propionate Producers Anaerotignum propionicum and Anaerotignum neopropionicum (Formerly Clostridium propionicum and Clostridium neopropionicum).	Baur T, Durre P.	Microorganisms	10.3390/microorganisms11030685	2023
Metabolism	Arabinoxylan and Pectin Metabolism in Crohn's Disease Microbiota: An In Silico Study.	Sabater C, Calvete-Torre I, Ruiz L, Margolles A.	Int J Mol Sci	10.3390/ijms23137093	2022
Metabolism	Distribution and preservation of the components of the engulfment. What is beyond representative genomes?	Soto-Avila L, Merce RC, Santos W, Castaneda N, Gutierrez-Rios RM.	PLoS One	10.1371/journal.pone.0246651	2021
	Genome-wide detection of conservative site-specific recombination in bacteria.	Sekulovic O, Mathias Garrett E, Bourgeois J, Tamayo R, Shen A, Camilli A.	PLoS Genet	10.1371/journal.pgen.1007332	2018
	Enhancement of lactate fraction in poly(lactate-co-3-hydroxybutyrate) biosynthesized by metabolically engineered E. coli.	Zhang B, Guo P, Sun X, Shang Y, Luo Y, Wu H.	Bioresour Bioprocess	10.1186/s40643-024-00803-2	2024
	The impact of diet and ethnicity on gut microbiota variation in irritable bowel syndrome: A multi-center study.	Khoo XH, Chong CW, Talha AM, Philip K, Teh CS, Isa AM, Wong MS, Chew DC, Wong Z, Jusoh NS, Maksum NMM, Mokhtar NM, Majid HA, Ali RAR, Lee YY, Mahadeva S.	J Gastroenterol Hepatol	10.1111/jgh.16174	2023
	Microbiome composition of kombucha tea from Türkiye using high-throughput sequencing.	Kahraman-Ilikkan O.	J Food Sci Technol	10.1007/s13197-023-05725-z	2023
	Urban sports fields support higher levels of soil butyrate and butyrate-producing bacteria than urban nature parks.	Brame JE, Liddicoat C, Abbott CA, Cando-Dumancela C, Fickling NW, Robinson JM, Breed MF.	Ecol Evol	10.1002/ece3.70057	2024
Metabolism	Metabolic versatility of anaerobic sludge towards platform chemical production from waste glycerol.	Magalhaes CP, Alves JI, Duber A, Oleskowicz-Popiel P, Stams AJM, Cavaleiro AJ.	Appl Microbiol Biotechnol	10.1007/s00253-024-13248-6	2024
Metabolism	Distribution, organization and expression of genes concerned with anaerobic lactate utilization in human intestinal bacteria.	Sheridan PO, Louis P, Tsompanidou E, Shaw S, Harmsen HJ, Duncan SH, Flint HJ, Walker AW.	Microb Genom	10.1099/mgen.0.000739	2022
	The influence of benzene on the composition, diversity and performance of the anodic bacterial community in glucose-fed microbial fuel cells.	Tyszkiewicz N, Truu J, Mlynarz P, Pasternak G.	Front Microbiol	10.3389/fmicb.2024.1384463	2024
	Integrative multi-omics analysis uncovers tumor-immune-gut axis influencing immunotherapy outcomes in ovarian cancer.	Rosario SR, Long MD, Chilakapati S, Gomez EC, Battaglia S, Singh PK, Wang J, Wang K, Attwood K, Hess SM, McGray AJR, Odunsi K, Segal BH, Paragh G, Liu S, Wargo JA, Zsiros E.	Nat Commun	10.1038/s41467-024-54565-8	2024
	The active lung microbiota landscape of COVID-19 patients through the metatranscriptome data analysis.	Han Y, Jia Z, Shi J, Wang W, He K.	Bioimpacts	10.34172/bi.2021.23378	2022
	Depicting the landscape of gut microbial-metabolic interaction and microbial-host immune heterogeneity in deficient and proficient DNA mismatch repair colorectal cancers.	Li J, Guo Y, Liu J, Guo F, Du L, Yang Y, Li X, Ma Y.	J Immunother Cancer	10.1136/jitc-2023-007420	2023
	Exploring alternative pathways for the in vitro establishment of the HOPAC cycle for synthetic CO₂ fixation.	McLean R, Schwander T, Diehl C, Cortina NS, Paczia N, Zarzycki J, Erb TJ.	Sci Adv	10.1126/sciadv.adh4299	2023
Metabolism	nZVI Impacts Substrate Conversion and Microbiome Composition in Chain Elongation From D- and L-Lactate Substrates.	Contreras-Davila CA, Esveld J, Buisman CJN, Strik DPBTB.	Front Bioeng Biotechnol	10.3389/fbioe.2021.666582	2021
	Microbial production of high octane and high sensitivity olefinic ester biofuels.	Carruthers DN, Kim J, Mendez-Perez D, Monroe E, Myllenbeck N, Liu Y, Davis RW, Sundstrom E, Lee TS.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02301-7	2023
Metabolism	Genome-scale metabolic modelling enables deciphering ethanol metabolism via the acrylate pathway in the propionate-producer Anaerotignum neopropionicum.	Benito-Vaquerizo S, Parera Olm I, de Vroet T, Schaap PJ, Sousa DZ, Martins Dos Santos VAP, Suarez-Diez M.	Microb Cell Fact	10.1186/s12934-022-01841-1	2022
	The Multifunctional Sactipeptide Ruminococcin C1 Displays Potent Antibacterial Activity In Vivo as Well as Other Beneficial Properties for Human Health.	Roblin C, Chiumento S, Jacqueline C, Pinloche E, Nicoletti C, Olleik H, Courvoisier-Dezord E, Amouric A, Basset C, Dru L, Ollivier M, Bogey-Lambert A, Vidal N, Atta M, Maresca M, Devillard E, Duarte V, Perrier J, Lafond M.	Int J Mol Sci	10.3390/ijms22063253	2021
	Co-occurrence of Campylobacter Species in Children From Eastern Ethiopia, and Their Association With Environmental Enteric Dysfunction, Diarrhea, and Host Microbiome.	Terefe Y, Deblais L, Ghanem M, Helmy YA, Mummed B, Chen D, Singh N, Ahyong V, Kalantar K, Yimer G, Yousuf Hassen J, Mohammed A, McKune SL, Manary MJ, Ordiz MI, Gebreyes W, Havelaar AH, Rajashekara G.	Front Public Health	10.3389/fpubh.2020.00099	2020
Genetics	Complete Genome Sequence of the Amino Acid-Fermenting Clostridium propionicum X2 (DSM 1682).	Poehlein A, Schlien K, Chowdhury NP, Gottschalk G, Buckel W, Daniel R	Genome Announc	10.1128/genomeA.00294-16	2016
Phylogeny	Isolation of Clostridium propionicum strain 19acry3 and further characteristics of the species.	Janssen PH	Arch Microbiol	10.1007/BF00245351	1991
	Chakrabartyella piscis gen. nov., sp. nov., a member of the family Lachnospiraceae, isolated from the hindgut of the marine herbivorous fish Kyphosus sydneyanus.	Pardesi B, Roberton AM, Wollmuth EM, Angert ER, Rosendale DI, White WL, Clements KD.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006100	2023
Phylogeny	Anaerotignum faecicola sp. nov., isolated from human faeces.	Choi SH, Kim JS, Park JE, Lee KC, Eom MK, Oh BS, Yu SY, Kang SW, Han KI, Suh MK, Lee DH, Yoon H, Kim BY, Lee JH, Lee JH, Lee JS, Park SH	J Microbiol	10.1007/s12275-019-9268-3	2019
Phylogeny	Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum.	Ueki A, Goto K, Ohtaki Y, Kaku N, Ueki K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002268	2017

References

#856	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1682
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43524	Atsuko Ueki, Kazushi Goto, Yoshimi Ohtaki, Nobuo Kaku, Katsuji Ueki: Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum. IJSEM 67: 4146 - 4153 2017 ( DOI 10.1099/ijsem.0.002268 , PubMed 28905695 )
#45180	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 9280
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anaerotignum propionicum (DSM 1682, ATCC 25522, NCIMB 10656)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Compound production

Metabolite utilization

Metabolite production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001561955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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