Name: Anaerotignum propionicum X2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2646

Type strain:

Species: Anaerotignum propionicum

Strain Designation: X2

Culture col. no.: DSM 1682, ATCC 25522, NCIMB 10656, CCUG 9280, JCM 1430, VPI 5303

Strain history: ATCC 25522 <-- L. DS. Smith VPI 5303 <-- M. Poston <-- E. Stadtman <-- H. Barker X2.

NCBI tax ID(s): 991789 (strain), 28446 (species)

SI-ID 38577

ATCC 25522, DSM 1682, CCUG 9280, NCIB 10656, JCM 1430, NCIMB 10656

Special Collections

Other strains from Anaerotignum propionicum

Section

Anaerotignum propionicum X2 is an anaerobe, chemoorganotroph, spore-forming bacterium that was isolated from black mud.

Gram-positive
motile
rod-shaped
spore-forming
anaerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Anaerotignum*
	Species	**Anaerotignum propionicum**
	Full Scientific Name (LPSN)	Anaerotignum propionicum (Cardon and Barker 1946) Ueki et al. 2017

	Synonym	"Tyzzerella* propionica"*
	Synonym	Clostridium propionicum

Information on morphological and physiological properties Morphology

[Ref.: #43524]	Gram stain	positive

[Ref.: #43524]	Cell length	1.3-5 µm

[Ref.: #43524]	Cell width	0.5-0.8 µm

[Ref.: #43524]	Cell shape	rod-shaped

[Ref.: #43524]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #856]

Culture medium

ANAEROTIGNUM MEDIUM (DSMZ Medium 156)

[Ref.: #856]

Culture medium growth

[Ref.: #856]

Culture medium link

Medium recipe at MediaDive

[Ref.: #856]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #856]			growth	35 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #856]	Oxygen tolerance	anaerobe
[Ref.: #43524]	Oxygen tolerance	obligate anaerobe

[Ref.: #43524]

Nutrition type

chemoorganotroph

[Ref.: #43524]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #856]

Name of produced compound

acrylic acid

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43524]	ethanol ChEBI	+/-	assimilation
[Ref.: #43524]	glucose ChEBI	-	assimilation
[Ref.: #43524]	L-alanine ChEBI	+	assimilation
[Ref.: #43524]	L-isoleucine ChEBI	+	assimilation
[Ref.: #43524]	L-leucine ChEBI	+	assimilation
[Ref.: #43524]	L-serine ChEBI	+	assimilation
[Ref.: #43524]	L-threonine ChEBI	+	assimilation
[Ref.: #43524]	L-valine ChEBI	+	assimilation
[Ref.: #43524]	xylose ChEBI	-	assimilation

	Metabolite	Production
[Ref.: #43524]	acetate ChEBI	yes
[Ref.: #43524]	butyrate ChEBI	yes
[Ref.: #43524]	isobutyrate ChEBI	yes
[Ref.: #43524]	isovalerate ChEBI	yes
[Ref.: #43524]	propionate ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #856]	Sample type/isolated from	black mud
[Ref.: #856]	Geographic location (country and/or sea, region)	California, San Francisco Bay
[Ref.: #856]	Country	USA
[Ref.: #856]	Country ISO 3 Code	USA
[Ref.: #856]	Continent	North America

[Ref.: #43524]	Sample type/isolated from	black mud

[Ref.: #45180]	Sample type/isolated from	Mud

[Ref.: #67770]	Sample type/isolated from	Black mud from San Francisco Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	CA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB649276 (>99% sequence identity) for Anaerotignum from Microbeatlas

Aquatic Samples	241
Soil Samples	79
Animal Samples	2798
Plant Samples	61
Total Samples	3179

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #856]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #856]	Clostridium propionicum 16S rRNA gene, strain DSM 1682	X77841	1527	GenBank ENA	991789 tax ID
[Ref.: #67770]	Clostridium propionicum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1430	AB649276	1495	GenBank ENA	28446 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerotignum propionicum DSM 1682 X2	GCA_001561955	complete	GenBank ENA	991789 tax ID	*
[Ref.: #66792]	Anaerotignum propionicum DSM 1682	GCA_900129165	scaffold	GenBank ENA	991789 tax ID	*
[Ref.: #66792]	[Clostridium] propionicum DSM 1682	991789.4	wgs	PATRIC	991789 tax ID	*
[Ref.: #66792]	Anaerotignum propionicum DSM 1682 strain X2	991789.25	complete	PATRIC	991789 tax ID	*
[Ref.: #66792]	Anaerotignum propionicum X2, DSM 1682	2582581271	draft	JGI IMG/M	991789 tax ID	*
[Ref.: #66792]	Anaerotignum propionicum X2, DSM 1682	2808606817	complete	JGI IMG/M	991789 tax ID	*

[Ref.: #43524]

GC-content

36 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerotignum propionicum DSM 1682 X2 NCBI: GCA_001561955.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerotignum propionicum DSM 1682 X2 NCBI: GCA_001561955.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	57.674	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	82.734	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	90.419	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	64.233	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	85.581	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	67.234	no

Availability in culture collections External links

[Ref.: #856]

Culture collection no.

DSM 1682, ATCC 25522, NCIMB 10656, CCUG 9280, JCM 1430, VPI 5303

[Ref.: #72177]

SI-ID 38577

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anaerotignum faecicola sp. nov., isolated from human faeces.	Choi SH, Kim JS, Park JE, Lee KC, Eom MK, Oh BS, Yu SY, Kang SW, Han KI, Suh MK, Lee DH, Yoon H, Kim BY, Lee JH, Lee JH, Lee JS, Park SH	J Microbiol	10.1007/s12275-019-9268-3	2019	*
Phylogeny	Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum.	Ueki A, Goto K, Ohtaki Y, Kaku N, Ueki K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002268	2017	*
Genetics	Complete Genome Sequence of the Amino Acid-Fermenting Clostridium propionicum X2 (DSM 1682).	Poehlein A, Schlien K, Chowdhury NP, Gottschalk G, Buckel W, Daniel R	Genome Announc	10.1128/genomeA.00294-16	2016	*
Phylogeny	Isolation of Clostridium propionicum strain 19acry3 and further characteristics of the species.	Janssen PH	Arch Microbiol	10.1007/BF00245351	1991	*

References

#856	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1682

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43524

Atsuko Ueki, Kazushi Goto, Yoshimi Ohtaki, Nobuo Kaku, Katsuji Ueki: Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum. IJSEM 67: 4146 - 4153 2017 ( DOI 10.1099/ijsem.0.002268 , PubMed 28905695 )

#45180 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 9280

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72177

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38577.1 )

* These data were automatically processed and therefore are not curated

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Anaerotignum propionicum DSM 1682 X2

Anaerotignum propionicum DSM 1682 X2

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