Strain identifier

BacDive ID: 2646

Type strain: Yes

Species: Anaerotignum propionicum

Strain Designation: X2

Strain history: ATCC 25522 <-- L. DS. Smith VPI 5303 <-- M. Poston <-- E. Stadtman <-- H. Barker X2.

NCBI tax ID(s): 991789 (strain), 28446 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 856

BacDive-ID: 2646

DSM-Number: 1682

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, chemoorganotroph, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Anaerotignum propionicum X2 is an anaerobe, chemoorganotroph, spore-forming bacterium that was isolated from black mud.

NCBI tax id

NCBI tax idMatching level
991789strain
28446species

strain history

@refhistory
856<- ATCC <- L. DS. Smith; VPI 5303 <- J. M. Poston, National Institute of Health, Bethesda, Md., USA <- E. R. Stadtman <- H. A. Barker, University of California, Berkeley, USA; X2 {1942}
67770ATCC 25522 <-- L. DS. Smith VPI 5303 <-- M. Poston <-- E. Stadtman <-- H. Barker X2.

doi: 10.13145/bacdive2646.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Anaerotignum
  • species: Anaerotignum propionicum
  • full scientific name: Anaerotignum propionicum (Cardon and Barker 1946) Ueki et al. 2017
  • synonyms

    @refsynonym
    20215Clostridium propionicum
    20215Tyzzerella propionica

@ref: 856

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Lachnospiraceae

genus: Anaerotignum

species: Anaerotignum propionicum

full scientific name: Anaerotignum propionicum (Cardon and Barker 1946) Ueki et al. 2017

strain designation: X2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
43524positive1.3-5 µm0.5-0.8 µmrod-shapedyes
69480positive100

Culture and growth conditions

culture medium

  • @ref: 856
  • name: ANAEROTIGNUM MEDIUM (DSMZ Medium 156)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/156
  • composition: Name: ANAEROTIGNUM MEDIUM (DSMZ Medium 156) Composition: Yeast extract 4.0 g/l L-Alanine 3.0 g/l Peptone 3.0 g/l NaHCO3 1.0 g/l L-Cysteine HCl x H2O 0.3 g/l MgSO4 x 7 H2O 0.1 g/l FeSO4 x 7 H2O 0.018 g/l Sodium resazurin 0.0005 g/l Potassium phosphate buffer CaSO4 Distilled water

culture temp

@refgrowthtypetemperaturerange
856positivegrowth35mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
856anaerobe
43524obligate anaerobe
69480anaerobe99.999

nutrition type

  • @ref: 43524
  • type: chemoorganotroph

spore formation

@refspore formationconfidence
43524yes
69481yes100

compound production

  • @ref: 856
  • compound: acrylic acid

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4352417234glucose-assimilation
4352418222xylose-assimilation
4352416977L-alanine+assimilation
4352417191L-isoleucine+assimilation
4352415603L-leucine+assimilation
4352417115L-serine+assimilation
4352416857L-threonine+assimilation
4352416414L-valine+assimilation
4352416236ethanol+/-assimilation

metabolite production

@refChebi-IDmetaboliteproduction
4352430089acetateyes
4352417968butyrateyes
4352448944isobutyrateyes
4352448942isovalerateyes
4352417272propionateyes

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
856black mudCalifornia, San Francisco BayUSAUSANorth America
43524black mud
45180Mud
67770Black mud from San Francisco BayCAUSAUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4084.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_41;96_2071;97_2496;98_3089;99_4084&stattab=map
  • Last taxonomy: Anaerotignum
  • 16S sequence: AB649276
  • Sequence Identity:
  • Total samples: 3179
  • soil counts: 79
  • aquatic counts: 241
  • animal counts: 2798
  • plant counts: 61

Safety information

risk assessment

  • @ref: 856
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
856Clostridium propionicum 16S rRNA gene, strain DSM 1682X778411527ena991789
67770Clostridium propionicum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1430AB6492761495ena28446

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anaerotignum propionicum DSM 1682 X2GCA_001561955completencbi991789
66792Anaerotignum propionicum DSM 1682GCA_900129165scaffoldncbi991789
66792[Clostridium] propionicum DSM 1682991789.4wgspatric991789
66792Anaerotignum propionicum DSM 1682 strain X2991789.25completepatric991789
66792Anaerotignum propionicum X2, DSM 16822582581271draftimg991789
66792Anaerotignum propionicum X2, DSM 16822808606817completeimg991789

GC content

  • @ref: 43524
  • GC-content: 36
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno64.223no
gram-positiveyes81.261yes
anaerobicyes99.074yes
aerobicno98.56yes
halophileno79.875no
spore-formingyes80.705yes
thermophileno95.253no
glucose-utilyes71.225yes
motileyes90.006yes
glucose-fermentyes53.899no

External links

@ref: 856

culture collection no.: DSM 1682, ATCC 25522, NCIMB 10656, CCUG 9280, JCM 1430, VPI 5303

straininfo link

  • @ref: 72177
  • straininfo: 38577

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1953298Isolation of Clostridium propionicum strain 19acry3 and further characteristics of the species.Janssen PHArch Microbiol10.1007/BF002453511991Acrylates/*metabolism, Anaerobiosis, Biodegradation, Environmental, Clostridium/growth & development/*isolation & purification/metabolism/ultrastructure, Culture Media, Fermentation, Microscopy, Electron, Microscopy, Fluorescence, Microscopy, Phase-ContrastMetabolism
Genetics27081148Complete Genome Sequence of the Amino Acid-Fermenting Clostridium propionicum X2 (DSM 1682).Poehlein A, Schlien K, Chowdhury NP, Gottschalk G, Buckel W, Daniel RGenome Announc10.1128/genomeA.00294-162016
Phylogeny28905695Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum.Ueki A, Goto K, Ohtaki Y, Kaku N, Ueki KInt J Syst Evol Microbiol10.1099/ijsem.0.0022682017Animals, Bacterial Typing Techniques, Base Composition, Bioreactors/microbiology, Cattle, Clostridiales/*classification/genetics/isolation & purification, Clostridium/*classification, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Japan, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Waste Disposal, FluidTranscriptome
Phylogeny31680219Anaerotignum faecicola sp. nov., isolated from human faeces.Choi SH, Kim JS, Park JE, Lee KC, Eom MK, Oh BS, Yu SY, Kang SW, Han KI, Suh MK, Lee DH, Yoon H, Kim BY, Lee JH, Lee JH, Lee JS, Park SHJ Microbiol10.1007/s12275-019-9268-32019Bacterial Typing Techniques, Base Composition, Clostridiales/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Feces/*microbiology, Humans, Hydrogen-Ion Concentration, *Microbiota, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seoul, Sequence Analysis, DNA, TemperaturePathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
856Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1682)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1682
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
43524Atsuko Ueki, Kazushi Goto, Yoshimi Ohtaki, Nobuo Kaku, Katsuji Ueki10.1099/ijsem.0.002268Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus AnaerotignumIJSEM 67: 4146-4153 201728905695
45180Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 9280)https://www.ccug.se/strain?id=9280
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72177Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID38577.1StrainInfo: A central database for resolving microbial strain identifiers