Caminicella sporogenes (DSM 14501, CIP 107141, AM 1114)

Name: Caminicella sporogenes (DSM 14501, CIP 107141, AM 1114)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2527

Type strain

Strain Designation AM 1114

Culture col. no. DSM 14501 CIP 107141 AM 1114

NCBI tax ID(s) 1121266 166485

Special Collections DSMZ CIP

Links

Caminicella sporogenes AM 1114 is an anaerobe, thermophilic prokaryote that was isolated from Alvinella pompejana tubes, deep-sea hydrothermal vent.

anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 100581

CIP 107141,DSM 14501

@ref 20215

Last LPSN update 2025-12-16 09:47:20

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Caminicella

Species Caminicella sporogenes

Full scientific name Caminicella sporogenes Alain et al. 2002

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5378	CAMINICELLA MEDIUM (DSMZ Medium 964)		Medium recipe at MediaDive	Name: CAMINICELLA MEDIUM (DSMZ Medium 964) Composition: Sea Salt 30.0 g/l Sulfur 12.0 g/l PIPES buffer 6.05 g/l D-Glucose 5.0 g/l Peptone 1.0 g/l Yeast extract 0.5 g/l Na2S x 9 H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5378	positive	growth	60	thermophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
5378	anaerobe
125438	anaerobe
125439	anaerobe

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	starch degradation	100	10 of 10
66794	ppGpp biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	chorismate metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	NAD metabolism	83.33	15 of 18
66794	vitamin B12 metabolism	82.35	28 of 34
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	photosynthesis	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	pyrimidine metabolism	71.11	32 of 45
66794	vitamin B1 metabolism	69.23	9 of 13
66794	phenylalanine metabolism	69.23	9 of 13
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	flavin biosynthesis	66.67	10 of 15
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	methionine metabolism	61.54	16 of 26
66794	purine metabolism	60.64	57 of 94
66794	factor 420 biosynthesis	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	hydrogen production	60	3 of 5
66794	oxidative phosphorylation	56.04	51 of 91
66794	serine metabolism	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	urea cycle	53.85	7 of 13
66794	non-pathway related	52.63	20 of 38
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	lysine metabolism	50	21 of 42
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	Entner Doudoroff pathway	50	5 of 10
66794	ketogluconate metabolism	50	4 of 8
66794	coenzyme A metabolism	50	2 of 4
66794	isoprenoid biosynthesis	50	13 of 26
66794	toluene degradation	50	2 of 4
66794	lipid metabolism	48.39	15 of 31
66794	tryptophan metabolism	47.37	18 of 38
66794	leucine metabolism	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	proline metabolism	45.45	5 of 11
66794	pentose phosphate pathway	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	citric acid cycle	42.86	6 of 14
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	lipoate biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	methylglyoxal degradation	40	2 of 5
66794	d-xylose degradation	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	degradation of pentoses	35.71	10 of 28
66794	polyamine pathway	34.78	8 of 23
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	pantothenate biosynthesis	33.33	2 of 6
66794	sulfate reduction	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	CMP-KDO biosynthesis	25	1 of 4
66794	degradation of sugar alcohols	25	4 of 16
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	glutathione metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Hydrothermal vent
#Host	#Invertebrates (Other)	#Annelida
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Host species	Geographic location	Latitude	Longitude
5378	Alvinella pompejana tubes, deep-sea hydrothermal vent	Alvinella pompejana	East-Pacific Rise, Elsa (HOT3)	12.8033	-103.939 12.8033/-103.939

Taxonmaps

69479

Global distribution of 16S sequence AJ320233 (>99% sequence identity) for Caminicella sporogenes subclade from Microbeatlas

Aquatic Samples	32
Soil Samples	2
Animal Samples	18
Plant Samples	2
Total Samples	54

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5378	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM360959v1 assembly for Caminicella sporogenes AM 1114	contig	GCA_003609595	166485.4	2831514688	166485	71.63
66792	IMG-taxon 2585428193 annotated assembly for Caminicella sporogenes DSM 14501	scaffold	GCA_900142285	1121266.3	2585428193	1121266	69.94

Genome browser: GCA_003609595

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5378	Caminibacillus sporogenes partial 16S rRNA gene, strain AM1114	AJ320233	1456		166485

GC content

@ref	GC-content (mol%)	Method
5378	24.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Caminicella sporogenes DSM 14501
NCBI: GCA_900142285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.90	no
125439	gram_stain	BacteriaNetⓘ	positive	78.30	no
125439	motility	BacteriaNetⓘ	yes	66.60	no
125439	spore_formation	BacteriaNetⓘ	yes	65.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Caminicella sporogenes DSM 14501 DSM 14501
NCBI: GCA_900142285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.00	no
125438	anaerobic	anaerobicⓘ	yes	90.85	no
125438	aerobic	aerobicⓘ	no	95.53	yes
125438	spore-forming	spore-formingⓘ	yes	61.11	no
125438	thermophilic	thermophileⓘ	yes	64.61	yes
125438	flagellated	motile2+ⓘ	yes	74.51	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Role of N,N-Dimethylglycine and Its Catabolism to Sarcosine in Chromohalobacter salexigens DSM 3043.	Yang T, Shao YH, Guo LZ, Meng XL, Yu H, Lu WD.	Appl Environ Microbiol	10.1128/aem.01186-20	2020
Enzymology	Biochemical Characterization and Validation of a Catalytic Site of a Highly Thermostable Ts2631 Endolysin from the Thermus scotoductus Phage vB_Tsc2631.	Plotka M, Kaczorowska AK, Morzywolek A, Makowska J, Kozlowski LP, Thorisdottir A, Skirnisdottir S, Hjorleifsdottir S, Fridjonsson OH, Hreggvidsson GO, Kristjansson JK, Dabrowski S, Bujnicki JM, Kaczorowski T.	PLoS One	10.1371/journal.pone.0137374	2015
Phylogeny	Caminicella sporogenes gen. nov., sp. nov., a novel thermophilic spore-forming bacterium isolated from an East-Pacific Rise hydrothermal vent.	Alain K, Pignet P, Zbinden M, Quillevere M, Duchiron F, Donval JP, Lesongeur F, Raguenes G, Crassous P, Querellou J, Cambon-Bonavita MA	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1621	2002

References

#5378	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14501
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caminicella sporogenes (DSM 14501, CIP 107141, AM 1114)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003609595

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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