Name: Caloramator viterbiensis JW/MS-VS5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2521

Type strain:

Species: Caloramator viterbiensis

Strain Designation: JW/MS-VS5

Culture col. no.: DSM 13723, ATCC PTA 584

Strain history: <- J. Wiegel, Univ. of Georgia, Athens, USA; JW/MS-VS5 <- M. Seyfried and J. Wiegel {1998}

NCBI tax ID(s): 1121263 (strain), 112729 (species)

SI-ID 100578

DSM 13723

Special Collections

DSMZ

Section

Caloramator viterbiensis JW/MS-VS5 is an anaerobe bacterium that was isolated from slightly alkaline hot spring.

anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Caloramator*
	Species	**Caloramator viterbiensis**
	Full Scientific Name (LPSN)	Caloramator viterbiensis corrig. Seyfried et al. 2002

Synonym

Caloramator viterbensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5130]

Culture medium

CALORAMATOR VITERBENSIS MEDIUM (DSMZ Medium 947)

[Ref.: #5130]

Culture medium growth

[Ref.: #5130]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5130]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5130]			growth	55 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5130]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5130]	Sample type/isolated from	slightly alkaline hot spring
[Ref.: #5130]	Geographic location (country and/or sea, region)	Bagnaccio near Viterbo
[Ref.: #5130]	Country	Italy
[Ref.: #5130]	Country ISO 3 Code	ITA
[Ref.: #5130]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Alkaline	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF181848 (>99% sequence identity) for Caloramator from Microbeatlas

Aquatic Samples	76
Soil Samples	28
Animal Samples	112
Plant Samples	3
Total Samples	219

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5130]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5130]	Caloramator viterbiensis 16S ribosomal RNA gene, partial sequence	AF181848	1480	GenBank ENA	1121263 tax ID

[Ref.: #5130]

GC-content

32 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #5130]

Culture collection no.

DSM 13723, ATCC PTA 584

[Ref.: #72056]

SI-ID 100578

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fonticella tunisiensis gen. nov., sp. nov., isolated from a hot spring.	Fraj B, Ben Hania W, Postec A, Hamdi M, Ollivier B, Fardeau ML	Int J Syst Evol Microbiol	10.1099/ijs.0.041947-0	2012	*
Phylogeny	Caloramator quimbayensis sp. nov., an anaerobic, moderately thermophilic bacterium isolated from a terrestrial hot spring.	Rubiano-Labrador C, Baena S, Diaz-Cardenas C, Patel BKC	Int J Syst Evol Microbiol	10.1099/ijs.0.037937-0	2012	*
Phylogeny	Caloramator viterbensis sp. nov., a novel thermophilic, glycerol-fermenting bacterium isolated from a hot spring in Italy.	Seyfried M, Lyon D, Rainey FA, Wiegel J	Int J Syst Evol Microbiol	10.1099/00207713-52-4-1177	2002	*

References

#5130

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13723

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72056

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100578.1 )

* These data were automatically processed and therefore are not curated

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