Name: Desulfurispirillum indicum S5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2497

Type strain:

Species: Desulfurispirillum indicum

Strain Designation: S5

Culture col. no.: DSM 22839, ATCC BAA-1389

Strain history: <- M. M. Häggblom, Rutgers, State Univ. New Jersey, New Brunswick, USA; S5 <- P. Narasingarao {2003}

NCBI tax ID(s): 936456 (species)

SI-ID 396748

DSM 22839

Section

Desulfurispirillum indicum S5 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from river sediment.

Gram-negative
motile
spiral-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chrysiogenota*
	Class	*Chrysiogenia*
	Order	*Chrysiogenales*
	Family	*Chrysiogenaceae*
	Genus	*Desulfurispirillum*
	Species	**Desulfurispirillum indicum**
	Full Scientific Name (LPSN)	Desulfurispirillum indicum Rauschenbach et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #23076]	Gram stain	negative

[Ref.: #23076]	Cell length	2.0-7.0 µm

[Ref.: #23076]	Cell width	0.10-0.15 µm

[Ref.: #23076]	Cell shape	spiral-shaped

[Ref.: #23076]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16419]

Culture medium

DESULFURISPIRILLUM INDICUM MEDIUM (DSMZ Medium 1294)

[Ref.: #16419]

Culture medium growth

[Ref.: #16419]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16419]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16419]	growth	28 °C
[Ref.: #23076]	maximum	37.0 °C
[Ref.: #23076]	optimum	28.0 °C

[Ref.: #16419]	Temperature range	mesophilic
[Ref.: #23076]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23076]			optimum	7.4
[Ref.: #23076]			growth	6.8-7.6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16419]	Oxygen tolerance	anaerobe
[Ref.: #23076]	Oxygen tolerance	obligate anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23076]		NaCl		growth	0.10-0.75	M
[Ref.: #23076]		NaCl		optimum	0.4	M

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23076]	acetate ChEBI	+	oxidation
[Ref.: #23076]	arsenate ChEBI	+	electron acceptor
[Ref.: #23076]	chlorate ChEBI	-	reduction
[Ref.: #23076]	chromate ChEBI	-	electron acceptor
[Ref.: #23076]	citrate ChEBI	-	reduction
[Ref.: #23076]	dimethyl sulfoxide ChEBI	-	electron acceptor
[Ref.: #23076]	elemental sulfur ChEBI	-	electron acceptor
[Ref.: #23076]	ferric oxide ChEBI	-	reduction
[Ref.: #23076]	formate ChEBI	-	oxidation
[Ref.: #23076]	fumarate ChEBI	-	electron donor
[Ref.: #23076]	fumarate ChEBI	-	reduction
[Ref.: #23076]	hydrogen sulfide ChEBI	-	electron donor
[Ref.: #23076]	lactate ChEBI	+	oxidation
[Ref.: #23076]	malate ChEBI	-	electron donor
[Ref.: #23076]	nitrate ChEBI	+	reduction
[Ref.: #23076]	nitrite ChEBI	-	electron acceptor
[Ref.: #23076]	propionate ChEBI	-	electron donor
[Ref.: #23076]	pyruvate ChEBI	+	oxidation
[Ref.: #23076]	selenate ChEBI	+	electron acceptor
[Ref.: #23076]	selenite ChEBI	+	electron acceptor
[Ref.: #23076]	succinate ChEBI	-	electron donor
[Ref.: #23076]	sulfate ChEBI	-	reduction
[Ref.: #23076]	sulfide ChEBI	-	electron donor
[Ref.: #23076]	thiosulfate ChEBI	-	reduction
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16419]	Sample type/isolated from	river sediment
[Ref.: #16419]	Geographic location (country and/or sea, region)	Chennai, Buckingham Canal, Chepauk
[Ref.: #16419]	Country	India
[Ref.: #16419]	Country ISO 3 Code	IND
[Ref.: #16419]	Continent	Asia

[Ref.: #23076]	Sample type/isolated from	enrichment culture of sediments collected in an estuarine canal
[Ref.: #23076]	Enrichment culture	anaerobic medium
[Ref.: #23076]	Enrichment culture composition	containing selenate as electron acceptor and pyruvate as carbon source and electron donor
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	-
#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ991965 (>99% sequence identity) for Desulfurispirillum from Microbeatlas

Aquatic Samples	445
Soil Samples	166
Animal Samples	3918
Plant Samples	47
Total Samples	4576

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16419]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16419]	Desulfurispirillum indicum S5 16S ribosomal RNA gene, partial sequence	DQ991965	1530	ENA	653733 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfurispirillum indicum S5	GCA_000177635	complete	GenBank	653733 tax ID	*
[Ref.: #66792]	Desulfurispirillum indicum S5	653733.4	complete	PATRIC	653733 tax ID	*
[Ref.: #66792]	Desulfurispirillum indicum S5, DSM 22839	649633038	complete	JGI IMG/M	653733 tax ID	*

[Ref.: #16419]

GC-content

56.0 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfurispirillum indicum S5 S5 NCBI: GCA_000177635.2
[Ref.: #69480]	motile	yes	90.774	yes
[Ref.: #69480]	flagellated	no	63.853	no
[Ref.: #69480]	gram-positive	no	99.306	yes
[Ref.: #69480]	anaerobic	yes	98.71	yes
[Ref.: #69480]	aerobic	no	97.542	yes
[Ref.: #69480]	halophile	no	77.516	no
[Ref.: #69480]	spore-forming	no	92.178	no
[Ref.: #69480]	thermophile	no	93.272	yes
[Ref.: #69480]	glucose-util	no	70.686	no
[Ref.: #69480]	glucose-ferment	no	88.376	no

Availability in culture collections External links

[Ref.: #16419]

Culture collection no.

DSM 22839, ATCC BAA-1389

[Ref.: #72034]

SI-ID 396748

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfurispirillum indicum sp. nov., a selenate- and selenite-respiring bacterium isolated from an estuarine canal.	Rauschenbach I, Narasingarao P, Haggblom MM	Int J Syst Evol Microbiol	10.1099/ijs.0.022392-0	2010	*

References

#16419

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22839

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23076

Ines Rauschenbach,Priya Narasingarao,Max M. Häggblom: Desulfurispirillum indicum sp. nov., a selenate- and selenite-respiring bacterium isolated from an estuarine canal. IJSEM 61: 654 - 658 2011 ( DOI 10.1099/ijs.0.022392-0 , PubMed 20400664 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72034

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396748.1 )

* These data were automatically processed and therefore are not curated

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Desulfurispirillum indicum S5 S5

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