Name: Thiocystis violacea 2711
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2487

Type strain:

Species: Thiocystis violacea

Strain Designation: 2711

Culture col. no.: DSM 207, Pfennig 2711

Strain history: <- N. Pfennig, 2711

NCBI tax ID(s): 13725 (species)

SI-ID 47089

DSM 207

Other strains from Thiocystis violacea

T. violacea 2311, DSM 208, Pfennig 2311

Section

Thiocystis violacea 2711 is an anaerobe, mesophilic, motile bacterium that was isolated from forest pond.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Thiocystis*
	Species	**Thiocystis violacea**
	Full Scientific Name (LPSN)	Thiocystis violacea Winogradsky 1888 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #69480]	Motility	yes Confidence in %94.756

Information on culture and growth conditions Culture and growth conditions

[Ref.: #47]

Culture medium

PFENNIG'S MEDIUM I (modified 1988, for purple sulfur bacteria) (DSMZ Medium 28)

[Ref.: #47]

Culture medium growth

[Ref.: #47]

Culture medium link

Medium recipe at MediaDive

[Ref.: #47]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #47]			growth	25 °C

[Ref.: #47]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #47]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %96.357

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.981

[Ref.: #47]

Name of produced compound

carotenoids

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #47]	Sample type/isolated from	forest pond
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Environmental	#Terrestrial	#Forest

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y11315 (>99% sequence identity) for Thiocystis violacea subclade from Microbeatlas

Aquatic Samples	20
Soil Samples	10
Animal Samples	10
Plant Samples
Total Samples	40

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #47]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thiocystis violacea partial 16S rRNA gene, type strain 4340 = DSM 207T	FN293059	1460	ENA	13725 tax ID	*
[Ref.: #20218]	Thiocystis violacea partial 16S rRNA gene, type strain DSMZ 207T	Y11315	1450	ENA	13725 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thiocystis violacea DSM 207	GCA_016583575	contig	GenBank	13725 tax ID	*
[Ref.: #66792]	Thiocystis violacea strain DSM 207	13725.6	wgs	PATRIC	13725 tax ID	*

[Ref.: #47]

GC-content

63.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thiocystis violacea strain DSM 207 PATRIC: 13725.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thiocystis violacea strain DSM 207 PATRIC: 13725.6
[Ref.: #69480]	motile	yes	89.693	no
[Ref.: #69480]	gram-positive	no	99.15	no
[Ref.: #69480]	anaerobic	yes	96.384	yes
[Ref.: #69480]	halophile	no	92.976	no
[Ref.: #69480]	spore-forming	no	90.049	no
[Ref.: #69480]	thermophile	no	96.839	yes
[Ref.: #69480]	glucose-util	yes	66.292	no
[Ref.: #69480]	aerobic	no	95.724	yes
[Ref.: #69480]	flagellated	no	52.223	no
[Ref.: #69480]	glucose-ferment	no	83.962	no

Availability in culture collections External links

[Ref.: #47]

Culture collection no.

DSM 207, Pfennig 2711

[Ref.: #72027]

SI-ID 47089

References

#47	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 207

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72027

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47089.1 )

* These data were automatically processed and therefore are not curated

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Thiocystis violacea strain DSM 207

Thiocystis violacea strain DSM 207

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