Name: Thiocystis violacea 2311
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2488

Type strain:

Species: Thiocystis violacea

Strain Designation: 2311

Culture col. no.: DSM 208, Pfennig 2311

Strain history: <- N. Pfennig, 2311. May represent a novel genus

NCBI tax ID(s): 13725 (species)

SI-ID 47090

DSM 208

Special Collections

DSMZ

Other strains from Thiocystis violacea

Section

Thiocystis violacea 2311 is an anaerobe, Gram-negative bacterium that was isolated from estuary.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Thiocystis*
	Species	**Thiocystis violacea**
	Full Scientific Name (LPSN)	Thiocystis violacea Winogradsky 1888 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.494

Information on culture and growth conditions Culture and growth conditions

[Ref.: #48]

Culture medium

PFENNIG'S MEDIUM I (modified 1988, for purple sulfur bacteria) (DSMZ Medium 28)

[Ref.: #48]

Culture medium growth

[Ref.: #48]

Culture medium link

Medium recipe at MediaDive

[Ref.: #48]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #48]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #48]

Oxygen tolerance

anaerobe

[Ref.: #48]

Name of produced compound

carotenoids

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #48]	Sample type/isolated from	estuary
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Brackish

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN293060 (>99% sequence identity) for Thiorhodococcus from Microbeatlas

Aquatic Samples	7
Soil Samples
Animal Samples
Plant Samples
Total Samples	7

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #48]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #48]	Thiocystis violacea partial 16S rRNA gene, strain 4341 = DSM 208	FN293060	1463	GenBank ENA	13725 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thiocystis violacea DSM 208	GCA_016583565	scaffold	GenBank ENA	13725 tax ID	*
[Ref.: #66792]	Thiocystis violacea strain DSM 208	13725.5	wgs	PATRIC	13725 tax ID	*

[Ref.: #48]

GC-content

63.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thiocystis violacea DSM 208 NCBI: GCA_016583565.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.494	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	65.302	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	77.573	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.931	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.007	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	73.767	no

Availability in culture collections External links

[Ref.: #48]

Culture collection no.

DSM 208, Pfennig 2311

[Ref.: #72028]

SI-ID 47090

References

#48	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 208

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72028

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47090.1 )

* These data were automatically processed and therefore are not curated

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Thiocystis violacea DSM 208

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