Name: Mariniradius saccharolyticus AK6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24725

Type strain:

Species: Mariniradius saccharolyticus

Strain Designation: AK6

Culture col. no.: DSM 25051, JCM 17389, MTCC 11279

Strain history: P. Anil Kumar AK6.

NCBI tax ID(s): 1245591 (species)

Section

Mariniradius saccharolyticus AK6 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from algal mat from seawater of a marine fish culture pond.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Mariniradius*
	Species	**Mariniradius saccharolyticus**
	Full Scientific Name (LPSN)	Mariniradius saccharolyticus Bhumika et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30768]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #30768]	Cell length	5 µm

[Ref.: #30768]	Cell width	0.75 µm

[Ref.: #30768]	Cell shape	rod-shaped

[Ref.: #30768]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.221

[Ref.: #21257]

Incubation period

2-3 days

[Ref.: #30768]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30768]	growth	25-42 °C
[Ref.: #30768]	optimum	33.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30768]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30768]			optimum	7.5
[Ref.: #30768]			growth	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30768]

Oxygen tolerance

aerobe

[Ref.: #30768]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30768]		NaCl		growth	0-4	%
[Ref.: #30768]		NaCl		optimum	2	%

[Ref.: #30768]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30768]	arabinose ChEBI	+	carbon source
[Ref.: #30768]	fructose ChEBI	+	carbon source
[Ref.: #30768]	glucose ChEBI	+	carbon source
[Ref.: #30768]	mannose ChEBI	+	carbon source
[Ref.: #30768]	raffinose ChEBI	+	carbon source
[Ref.: #30768]	sucrose ChEBI	+	carbon source
[Ref.: #30768]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30768]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30768]	catalase	+	1.11.1.6
[Ref.: #30768]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21257]	Sample type/isolated from	algal mat from seawater of a marine fish culture pond
[Ref.: #21257]	Geographic location (country and/or sea, region)	Andhra Pradesh, Vishakhapatnam, Bheemli (17° 53' N 83° 26' E)
[Ref.: #21257]	Country	India
[Ref.: #21257]	Country ISO 3 Code	IND
[Ref.: #21257]	Continent	Asia
[Ref.: #21257]	Geographic location	17.8833°/83.4333°

[Ref.: #67770]	Sample type/isolated from	Marine water from the sea shore at Visakhapatnam
[Ref.: #67770]	Geographic location (country and/or sea, region)	Andhra Pradesh
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Microbial community	#Microbial mat
#Host	#Algae	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR687202 (>99% sequence identity) for Mariniradius saccharolyticus subclade from Microbeatlas

Aquatic Samples	2463
Soil Samples	801
Animal Samples	1549
Plant Samples	147
Total Samples	4960

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21257]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21257]	Mariniradius saccharolyticus AK6 partial 16S rRNA gene, type strain AK6T	FR687202	1359	ENA	1239962 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mariniradius saccharolyticus AK6	GCA_000330725	contig	GenBank	1239962 tax ID
[Ref.: #66792]	Mariniradius saccharolyticus AK6	1239962.6	wgs	PATRIC	1239962 tax ID	*
[Ref.: #66792]	Mariniradius saccharolyticus AK6	2541047558	draft	JGI IMG/M	1239962 tax ID	*

[Ref.: #21257]	GC-content	45.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30768]	GC-content	45.6 mol%
[Ref.: #21257]	GC-content	46.7 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mariniradius saccharolyticus AK6 PATRIC: 1239962.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mariniradius saccharolyticus AK6 PATRIC: 1239962.6
[Ref.: #69480]	motile	no	93.673	no
[Ref.: #69480]	gram-positive	no	97.083	no
[Ref.: #69480]	anaerobic	no	97.624	no
[Ref.: #69480]	aerobic	yes	85.478	yes
[Ref.: #69480]	halophile	no	88.274	no
[Ref.: #69480]	spore-forming	no	94.858	no
[Ref.: #69480]	glucose-util	yes	85.782	no
[Ref.: #69480]	flagellated	no	97.361	no
[Ref.: #69480]	thermophile	no	94.975	yes
[Ref.: #69480]	glucose-ferment	no	86.005	no

Availability in culture collections External links

[Ref.: #21257]

Culture collection no.

DSM 25051, JCM 17389, MTCC 11279

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mariniradius saccharolyticus gen. nov., sp. nov., a member of the family Cyclobacteriaceae isolated from marine aquaculture pond water, and emended descriptions of the genus Aquiflexum and Aquiflexum balticum.	Bhumika V, Srinivas TNR, Ravinder K, Anil Kumar P	Int J Syst Evol Microbiol	10.1099/ijs.0.043919-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21257

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25051

#30768

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27099 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27099

IJSEM 2088 2013 ( DOI 10.1099/ijs.0.043919-0 , PubMed 23064355 )

* These data were automatically processed and therefore are not curated

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