Strain identifier

BacDive ID: 24725

Type strain: Yes

Species: Mariniradius saccharolyticus

Strain Designation: AK6

Strain history: P. Anil Kumar AK6.

NCBI tax ID(s): 1245591 (species)

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General

@ref: 21257

BacDive-ID: 24725

DSM-Number: 25051

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Mariniradius saccharolyticus AK6 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from algal mat from seawater of a marine fish culture pond.

NCBI tax id

  • NCBI tax id: 1245591
  • Matching level: species

strain history

@refhistory
21257<- A.K. Pinnaka, MTCC; AK6
67770P. Anil Kumar AK6.

doi: 10.13145/bacdive24725.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Mariniradius
  • species: Mariniradius saccharolyticus
  • full scientific name: Mariniradius saccharolyticus Bhumika et al. 2013

@ref: 21257

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Mariniradius

species: Mariniradius saccharolyticus

full scientific name: Mariniradius saccharolyticus Bhumika et al. 2013

strain designation: AK6

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30768negative5 µm0.75 µmrod-shapedno
69480no95.221
69480negative99.983

colony morphology

  • @ref: 21257
  • incubation period: 2-3 days

pigmentation

  • @ref: 30768
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30768positivegrowth25-42
30768positiveoptimum33.5mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
30768positivegrowth07-08
30768positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30768
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30768no
69481no100
69480no99.98

halophily

@refsaltgrowthtested relationconcentration
30768NaClpositivegrowth0-4 %
30768NaClpositiveoptimum2 %

observation

  • @ref: 30768
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3076822599arabinose+carbon source
3076828757fructose+carbon source
3076817234glucose+carbon source
3076837684mannose+carbon source
3076816634raffinose+carbon source
3076817992sucrose+carbon source
3076818222xylose+carbon source

enzymes

@refvalueactivityec
30768alpha-galactosidase+3.2.1.22
30768catalase+1.11.1.6
30768cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
21257algal mat from seawater of a marine fish culture pondAndhra Pradesh, Vishakhapatnam, Bheemli (17° 53' N 83° 26' E)IndiaINDAsia17.883383.4333
67770Marine water from the sea shore at VisakhapatnamAndhra PradeshIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Pond (small)
#Environmental#Microbial community#Microbial mat
#Host#Algae

taxonmaps

  • @ref: 69479
  • File name: preview.99_1817.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17634;96_1026;97_1198;98_1436;99_1817&stattab=map
  • Last taxonomy: Mariniradius saccharolyticus subclade
  • 16S sequence: FR687202
  • Sequence Identity:
  • Total samples: 4960
  • soil counts: 801
  • aquatic counts: 2463
  • animal counts: 1549
  • plant counts: 147

Safety information

risk assessment

  • @ref: 21257
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21257
  • description: Mariniradius saccharolyticus AK6 partial 16S rRNA gene, type strain AK6T
  • accession: FR687202
  • length: 1359
  • database: ena
  • NCBI tax ID: 1239962

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mariniradius saccharolyticus AK61239962.6wgspatric1239962
66792Mariniradius saccharolyticus AK62541047558draftimg1239962
67770Mariniradius saccharolyticus AK6GCA_000330725contigncbi1239962

GC content

@refGC-contentmethod
2125745.6thermal denaturation, midpoint method (Tm)
3076845.6
2125746.7sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.673no
gram-positiveno97.083no
anaerobicno97.624no
aerobicyes85.478yes
halophileno88.274no
spore-formingno94.858no
glucose-utilyes85.782no
flagellatedno97.361no
thermophileno94.975yes
glucose-fermentno86.005no

External links

@ref: 21257

culture collection no.: DSM 25051, JCM 17389, MTCC 11279

literature

  • topic: Phylogeny
  • Pubmed-ID: 23064355
  • title: Mariniradius saccharolyticus gen. nov., sp. nov., a member of the family Cyclobacteriaceae isolated from marine aquaculture pond water, and emended descriptions of the genus Aquiflexum and Aquiflexum balticum.
  • authors: Bhumika V, Srinivas TNR, Ravinder K, Anil Kumar P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.043919-0
  • year: 2012
  • mesh: *Aquaculture, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Gram-Negative Aerobic Rods and Cocci/*classification/genetics/isolation & purification, India, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21257Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25051Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25051)
30768Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172709928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1