Name: Nitritalea halalkaliphila LW7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24722

Type strain:

Species: Nitritalea halalkaliphila

Strain Designation: LW7

Culture col. no.: DSM 46695, CCUG 57665, JCM 15946, NCCB 100279

Strain history: S. Shivaji LW7.

NCBI tax ID(s): 590849 (species)

SI-ID 370986

JCM15946, CCUG 57665, NCCB 100279

Special Collections

Section

Nitritalea halalkaliphila LW7 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from water sample at a depth of 4,5m.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Nitritalea*
	Species	**Nitritalea halalkaliphila**
	Full Scientific Name (LPSN)	Nitritalea halalkaliphila Anil Kumar et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29759]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.989

[Ref.: #29759]	Cell length	02-03 µm

[Ref.: #29759]	Cell width	0.7-0.8 µm

[Ref.: #29759]	Cell shape	rod-shaped

[Ref.: #29759]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.5

[Ref.: #29759]

Pigment production

yes

Multimedia content

[Ref.: #21212]

Caption:

Medium 514a 37°C

[Ref.: #21212]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29759]	growth	25-40 °C
[Ref.: #29759]	optimum	37 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29759]			optimum	10
[Ref.: #29759]			growth	7.5-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29759]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.708
[Ref.: #69481]	Ability of spore formation	no Confidence in %93

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29759]		NaCl		growth	01-22	%
[Ref.: #29759]		NaCl		optimum	02-05	%

[Ref.: #29759]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-4, MK-5

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29759]	aspartate ChEBI	+	carbon source
[Ref.: #29759]	cellobiose ChEBI	+	carbon source
[Ref.: #29759]	citrate ChEBI	+	carbon source
[Ref.: #29759]	fructose ChEBI	+	carbon source
[Ref.: #29759]	glucose ChEBI	+	carbon source
[Ref.: #29759]	glutamate ChEBI	+	carbon source
[Ref.: #29759]	histidine ChEBI	+	carbon source
[Ref.: #29759]	lactose ChEBI	+	carbon source
[Ref.: #29759]	malonate ChEBI	+	carbon source
[Ref.: #29759]	pyruvate ChEBI	+	carbon source
[Ref.: #29759]	raffinose ChEBI	+	carbon source
[Ref.: #29759]	succinate ChEBI	+	carbon source
[Ref.: #29759]	sucrose ChEBI	+	carbon source
[Ref.: #29759]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29759]		catalase	+	1.11.1.6
[Ref.: #29759]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21212]	Sample type/isolated from	water sample at a depth of 4,5m
[Ref.: #21212]	Geographic location (country and/or sea, region)	Maharashtra, Buldhana district, Lonar, Lonar Lake
[Ref.: #21212]	Country	India
[Ref.: #21212]	Country ISO 3 Code	IND
[Ref.: #21212]	Continent	Asia

[Ref.: #61412]	Sample type/isolated from	Lake water
[Ref.: #61412]	Sampling date	2008-08-25
[Ref.: #61412]	Geographic location (country and/or sea, region)	Buldhana district,Lake Lonar
[Ref.: #61412]	Country	India
[Ref.: #61412]	Country ISO 3 Code	IND
[Ref.: #61412]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Water sample collected at a depth of 4.5 m from Lonar Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Lonar, Buldhana district, Maharashtra
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FM991866 (>99% sequence identity) for Nitritalea halalkaliphila subclade from Microbeatlas

Aquatic Samples	145
Soil Samples	48
Animal Samples	104
Plant Samples	6
Total Samples	303

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21212]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21212]	Nitritalea halalkaliphila 16S rRNA gene, type strain LW7T	FM991866	1499	GenBank ENA	1189621 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nitritalea halalkaliphila LW7	GCA_000265075	contig	GenBank ENA	1189621 tax ID	*
[Ref.: #66792]	Nitritalea halalkaliphila LW7	1189621.7	wgs	PATRIC	1189621 tax ID	*
[Ref.: #66792]	Nitritalea halalkaliphila LW7	2513237132	draft	JGI IMG/M	1189621 tax ID	*

[Ref.: #21212]	GC-content	49 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29759]	GC-content	49 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nitritalea halalkaliphila LW7 PATRIC: 1189621.7
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	93	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nitritalea halalkaliphila LW7 PATRIC: 1189621.7
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.989	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.608	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.708	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.93	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.528	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

[Ref.: #21212]

Culture collection no.

DSM 46695, CCUG 57665, JCM 15946, NCCB 100279

[Ref.: #88552]

SI-ID 370986

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitritalea halalkaliphila gen. nov., sp. nov., an alkaliphilic bacterium of the family 'Cyclobacteriaceae', phylum Bacteroidetes.	Anil Kumar P, Srinivas TNR, Pavan Kumar P, Madhu S, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.020230-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21212

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46695

#29759

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26140 (see below)

#61412 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57665

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88552

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370986.1 )

#26140

IJSEM 2320 2010 ( DOI 10.1099/ijs.0.020230-0 , PubMed 19933591 )

* These data were automatically processed and therefore are not curated

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