Name: Natranaerobaculum magadiense Z-1001
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24716

Type strain:

Species: Natranaerobaculum magadiense

Strain Designation: Z-1001

Culture col. no.: DSM 24923, VKM B-2666

Strain history: <- D. G. Zavarzina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-1001 <- D. G. Zavarzina {2010}

NCBI tax ID(s): 929101 (species)

SI-ID 399270

DSM 24923

Special Collections

Section

Natranaerobaculum magadiense Z-1001 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from bottom sediments of soda lake.

Gram-positive
motile
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Natranaerobiales*
	Family	*Natranaerobiaceae*
	Genus	*Natranaerobaculum*
	Species	**Natranaerobaculum magadiense**
	Full Scientific Name (LPSN)	Natranaerobaculum magadiense Zavarzina et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31164]	Gram stain	positive

[Ref.: #31164]	Cell length	5 µm

[Ref.: #31164]	Cell width	0.35 µm

[Ref.: #31164]	Cell shape	rod-shaped

[Ref.: #31164]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21297]

Culture medium

NATRONIELLA MEDIUM (DSMZ Medium 784)

[Ref.: #21297]

Culture medium growth

[Ref.: #21297]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21297]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21297]	growth	45 °C
[Ref.: #31164]	growth	20-57 °C
[Ref.: #31164]	optimum	47.5 °C

	pH	Kind of pH		pH
[Ref.: #31164]			optimum	9.5
[Ref.: #31164]			growth	7.5-10.7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21297]	Oxygen tolerance	anaerobe
[Ref.: #31164]	Oxygen tolerance	anaerobe

[Ref.: #31164]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31164]		NaCl		growth	0.0-8.99	%
[Ref.: #31164]		NaCl		optimum	7.54	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31164]	acetate ChEBI	+	carbon source
[Ref.: #31164]	formate ChEBI	+	carbon source
[Ref.: #31164]	lactate ChEBI	+	carbon source
[Ref.: #31164]	propionate ChEBI	+	carbon source
[Ref.: #31164]	succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21297]	Sample type/isolated from	bottom sediments of soda lake
[Ref.: #21297]	Geographic location (country and/or sea, region)	Lake Magadi
[Ref.: #21297]	Country	Kenya
[Ref.: #21297]	Country ISO 3 Code	KEN
[Ref.: #21297]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ322120 (>99% sequence identity) for Natranaerobaculum magadiense subclade from Microbeatlas

Aquatic Samples	41
Soil Samples	8
Animal Samples	21
Plant Samples	2
Total Samples	72

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21297]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21297]	Natranaerobaculum magadiense strain Z-1001 16S ribosomal RNA gene, partial sequence	HQ322118	1499	GenBank ENA	929101 tax ID
[Ref.: #21297]	Natranaerobaculum magadiense strain Z-1001 16S ribosomal RNA gene, partial sequence	HQ322119	1498	GenBank ENA	929101 tax ID
[Ref.: #21297]	Natranaerobaculum magadiense strain Z-1001 16S ribosomal RNA gene, partial sequence	HQ322120	1498	GenBank ENA	929101 tax ID

[Ref.: #21297]	GC-content	35.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31164]	GC-content	35.6 mol%

Availability in culture collections External links

[Ref.: #21297]

Culture collection no.

DSM 24923, VKM B-2666

[Ref.: #88546]

SI-ID 399270

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natranaerobaculum magadiense gen. nov., sp. nov., an anaerobic, alkalithermophilic bacterium from soda lake sediment.	Zavarzina DG, Zhilina TN, Kuznetsov BB, Kolganova TV, Osipov GA, Kotelev MS, Zavarzin GA	Int J Syst Evol Microbiol	10.1099/ijs.0.054536-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21297

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24923

#31164

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27492 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88546

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399270.1 )

#27492

IJSEM 4456 2013 ( DOI 10.1099/ijs.0.054536-0 , PubMed 23859946 )

* These data were automatically processed and therefore are not curated

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