Name: Actinophytocola gilvus I12A-02593
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24715

Type strain:

Species: Actinophytocola gilvus

Strain Designation: I12A-02593

Culture col. no.: DSM 45828, CPCC 203543, KCTC 29165, NBRC 109453

Strain history: <- Y.-Q. Zhang, Chinese Academy Medical Sci. and Peking Union Medical College, Beijing, China; CPCC 203543 <- H.-M. Sun et al.

NCBI tax ID(s): 1468259 (species)

SI-ID 400453

DSM 45828

Section

Actinophytocola gilvus I12A-02593 is a mesophilic bacterium that was isolated from desert soil crust.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinophytocola*
	Species	**Actinophytocola gilvus**
	Full Scientific Name (LPSN)	Actinophytocola gilvus Sun et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20906]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #20906]

Culture medium growth

[Ref.: #20906]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20906]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20906]			growth	28 °C

[Ref.: #20906]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20906]	Sample type/isolated from	desert soil crust
[Ref.: #20906]	Geographic location (country and/or sea, region)	Ningxia Hui Autonomous Region, Shapotou region of Tengger Desert
[Ref.: #20906]	Country	China
[Ref.: #20906]	Country ISO 3 Code	CHN
[Ref.: #20906]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF955588 (>99% sequence identity) for Actinophytocola gilvus from Microbeatlas

Aquatic Samples	8
Soil Samples	120
Animal Samples	12
Plant Samples	11
Total Samples	151

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20906]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20906]	Actinophytocola gilvus strain I12A-02593 16S ribosomal RNA gene, partial sequence	KF955588	1334	ENA	1468259 tax ID

[Ref.: #20906]

GC-content

70.1 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #20906]

Culture collection no.

DSM 45828, CPCC 203543, KCTC 29165, NBRC 109453

[Ref.: #88545]

SI-ID 400453

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinophytocola algeriensis sp. nov., an actinobacterium isolated from Saharan soil.	Bouznada K, Bouras N, Schumann P, Sproer C, Sabaou N, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.001136	2016	*
Phylogeny	Actinophytocola gilvus sp. nov., isolated from desert soil crusts, and emended description of the genus Actinophytocola Indananda et al. 2010.	Sun HM, Zhang T, Yu LY, Lu XX, Mou XZ, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijs.0.061051-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20906

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45828

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88545

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400453.1 )

* These data were automatically processed and therefore are not curated

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