Luteimonas huabeiensis (DSM 26429, CICC 11005s, HB2)

Name: Luteimonas huabeiensis (DSM 26429, CICC 11005s, HB2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24675

Type strain

Strain Designation HB2

Culture col. no. DSM 26429 CICC 11005s HB2

NCBI tax ID(s) 1244513

Special Collections DSMZ Literature strains

History <- L. Qing, Huabei Oil Field Production Eng. Res. Inst., Renqiu, China; HB2

Links

Luteimonas huabeiensis HB2 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from stratum water of an oilfield.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397618

DSM 26429

@ref 20215

Last LPSN update 2025-12-16 09:52:55

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Luteimonas

Species Luteimonas huabeiensis

Full scientific name Luteimonas huabeiensis Wu et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
31009	negative	1.225 µm	0.41 µm	rod-shaped
125438	negative					98.494

Pigmentation

31009

Productionyes

Multimedia

@ref:	20636
multimedia content:	DSM_26429.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_26429.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20636	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20636	positive	growth	37	mesophilic
31009	positive	growth	20-45
31009	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31009	positive	optimum	7
31009	positive	growth	06-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31009	aerobe
125439	obligate aerobe	99.7

Spore formation

@ref	Spore formation	Confidence
31009
125438		92.934
125439		91.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31009	NaCl	positive	growth	0-5 %
31009	NaCl	positive	optimum	0.5 %

Observation

31009

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31009	62064 ChEBI	2,3-butanediol	+	carbon source
31009	30089 ChEBI	acetate	+	carbon source
31009	35391 ChEBI	aspartate	+	carbon source
31009	17057 ChEBI	cellobiose	+	carbon source
31009	23652 ChEBI	dextrin	+	carbon source
31009	4853 ChEBI	esculin	+	hydrolysis
31009	16000 ChEBI	ethanolamine	+	carbon source
31009	15740 ChEBI	formate	+	carbon source
31009	28757 ChEBI	fructose	+	carbon source
31009	17234 ChEBI	glucose	+	carbon source
31009	29987 ChEBI	glutamate	+	carbon source
31009	17754 ChEBI	glycerol	+	carbon source
31009	24996 ChEBI	lactate	+	carbon source
31009	51850 ChEBI	methyl pyruvate	+	carbon source
31009	506227 ChEBI	N-acetylglucosamine	+	carbon source
31009	50048 ChEBI	phenylethylamine	+	carbon source
31009	26271 ChEBI	proline	+	carbon source
31009	17272 ChEBI	propionate	+	carbon source
31009	17148 ChEBI	putrescine	+	carbon source
31009	17822 ChEBI	serine	+	carbon source
31009	30031 ChEBI	succinate	+	carbon source
31009	26986 ChEBI	threonine	+	carbon source
31009	17748 ChEBI	thymidine	+	carbon source
31009	53423 ChEBI	tween 40	+	carbon source
31009	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31009	acid phosphatase	+	3.1.3.2
31009	alkaline phosphatase	+	3.1.3.1
31009	catalase	+	1.11.1.6
31009	cytochrome oxidase	+	1.9.3.1
31009	gelatinase	+
31009	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20636	stratum water of an oilfield	Huabei	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JX658136 (>99% sequence identity) for Luteimonas huabeiensis subclade from Microbeatlas

Aquatic Samples	157
Soil Samples	533
Animal Samples	151
Plant Samples	222
Total Samples	1063

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20636	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Luteimonas huabeiensis HB-2 Genome assembly for Luteimonas huabeiensis HB2	contig	GCA_000559025	1442599.3	2585427721	1442599	50

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20636	Luteimonas huabeiensis strain HB2 16S ribosomal RNA gene, partial sequence	JX658136	1506		1442599

GC content

@ref	GC-content (mol%)	Method
20636	67.0	high performance liquid chromatography (HPLC)
31009	67

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Luteimonas huabeiensis HB2
NCBI: GCA_000559025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.80	no
125439	motility	BacteriaNetⓘ	yes	71.50	no
125439	gram_stain	BacteriaNetⓘ	negative	89.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Luteimonas huabeiensis HB2
PATRIC: 1442599.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.49	no
125438	anaerobic	anaerobicⓘ	no	97.46	yes
125438	spore-forming	spore-formingⓘ	no	92.93	yes
125438	aerobic	aerobicⓘ	yes	84.46	yes
125438	thermophilic	thermophileⓘ	no	96.79	yes
125438	flagellated	motile2+ⓘ	yes	61.61	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteimonas cellulosilyticus sp. nov., Cellulose-Degrading Bacterium Isolated from Soil in Changguangxi National Wetland Park, China.	Lin P, Yan ZF, Li CT	Curr Microbiol	10.1007/s00284-020-01934-3	2020
Phylogeny	Luteimonas huabeiensis sp. nov., isolated from stratum water.	Wu G, Liu Y, Li Q, Du H, You J, Li H, Ke C, Zhang X, Yu J, Zhao T	Int J Syst Evol Microbiol	10.1099/ijs.0.049718-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20636	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26429
#27339	IJSEM 3352 2013 ( DOI 10.1099/ijs.0.049718-0 , PubMed 23504969 )
#31009	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27339
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Luteimonas huabeiensis (DSM 26429, CICC 11005s, HB2)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000559025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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