Strain identifier

BacDive ID: 24675

Type strain: Yes

Species: Luteimonas huabeiensis

Strain Designation: HB2

Strain history: <- L. Qing, Huabei Oil Field Production Eng. Res. Inst., Renqiu, China; HB2

NCBI tax ID(s): 1244513 (species)

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General

@ref: 20636

BacDive-ID: 24675

DSM-Number: 26429

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Luteimonas huabeiensis HB2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from stratum water of an oilfield.

NCBI tax id

  • NCBI tax id: 1244513
  • Matching level: species

strain history

  • @ref: 20636
  • history: <- L. Qing, Huabei Oil Field Production Eng. Res. Inst., Renqiu, China; HB2

doi: 10.13145/bacdive24675.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Luteimonas
  • species: Luteimonas huabeiensis
  • full scientific name: Luteimonas huabeiensis Wu et al. 2013

@ref: 20636

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacteraceae, not assigned to order

family: Lysobacteraceae

genus: Luteimonas

species: Luteimonas huabeiensis

full scientific name: Luteimonas huabeiensis Wu et al. 2013

strain designation: HB2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31009negative1.225 µm0.41 µmrod-shapedno
125438negative98.494

pigmentation

  • @ref: 31009
  • production: yes

multimedia

  • @ref: 20636
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26429.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 20636
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
20636positivegrowth37
31009positivegrowth20-45
31009positiveoptimum30

culture pH

@refabilitytypepHPH range
31009positivegrowth06-11alkaliphile
31009positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
31009aerobe
125439obligate aerobe99.7

spore formation

@refspore formationconfidence
31009no
125438no92.934
125439no91.8

halophily

@refsaltgrowthtested relationconcentration
31009NaClpositivegrowth0-5 %
31009NaClpositiveoptimum0.5 %

observation

  • @ref: 31009
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3100916000ethanolamine+carbon source
31009620642,3-butanediol+carbon source
3100930089acetate+carbon source
3100935391aspartate+carbon source
3100917057cellobiose+carbon source
3100923652dextrin+carbon source
3100915740formate+carbon source
3100928757fructose+carbon source
3100917234glucose+carbon source
3100929987glutamate+carbon source
3100917754glycerol+carbon source
3100924996lactate+carbon source
31009506227N-acetylglucosamine+carbon source
3100950048phenylethylamine+carbon source
3100926271proline+carbon source
3100917272propionate+carbon source
3100917148putrescine+carbon source
3100951850methyl pyruvate+carbon source
3100917822serine+carbon source
3100930031succinate+carbon source
3100926986threonine+carbon source
3100917748thymidine+carbon source
3100953423tween 40+carbon source
3100953426tween 80+carbon source
310094853esculin+hydrolysis

enzymes

@refvalueactivityec
31009acid phosphatase+3.1.3.2
31009alkaline phosphatase+3.1.3.1
31009catalase+1.11.1.6
31009gelatinase+
31009cytochrome oxidase+1.9.3.1
31009urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 20636
  • sample type: stratum water of an oilfield
  • geographic location: Huabei
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Oil reservoir
#Environmental#Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_4583.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_2286;97_2773;98_3443;99_4583&stattab=map
  • Last taxonomy: Luteimonas huabeiensis subclade
  • 16S sequence: JX658136
  • Sequence Identity:
  • Total samples: 1063
  • soil counts: 533
  • aquatic counts: 157
  • animal counts: 151
  • plant counts: 222

Safety information

risk assessment

  • @ref: 20636
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20636
  • description: Luteimonas huabeiensis strain HB2 16S ribosomal RNA gene, partial sequence
  • accession: JX658136
  • length: 1506
  • database: nuccore
  • NCBI tax ID: 1442599

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Luteimonas huabeiensis HB2GCA_000559025contigncbi1442599
66792Luteimonas huabeiensis HB21442599.3wgspatric1442599
66792Luteimonas huabeiensis HB22585427721draftimg1442599

GC content

@refGC-contentmethod
2063667.0high performance liquid chromatography (HPLC)
3100967

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno98.494no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.463yes
125438spore-formingspore-formingAbility to form endo- or exosporesno92.934yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes84.458yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.786yes
125438motile2+flagellatedAbility to perform flagellated movementyes61.608no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno91.8
125439BacteriaNetmotilityAbility to perform movementyes71.5
125439BacteriaNetgram_stainReaction to gram-stainingnegative89.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe99.7

External links

@ref: 20636

culture collection no.: DSM 26429, CICC 11005s

straininfo link

  • @ref: 88513
  • straininfo: 397618

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23504969Luteimonas huabeiensis sp. nov., isolated from stratum water.Wu G, Liu Y, Li Q, Du H, You J, Li H, Ke C, Zhang X, Yu J, Zhao TInt J Syst Evol Microbiol10.1099/ijs.0.049718-02013Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oil and Gas Fields/microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Ubiquinone/analysis, *Water Microbiology, Xanthomonadaceae/*classification/genetics/isolation & purificationGenetics
Phylogeny32140833Luteimonas cellulosilyticus sp. nov., Cellulose-Degrading Bacterium Isolated from Soil in Changguangxi National Wetland Park, China.Lin P, Yan ZF, Li CTCurr Microbiol10.1007/s00284-020-01934-32020China, Fatty Acids, Soil Microbiology, Wetlands, *Xanthomonadaceae/chemistry/classification/genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20636Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26429Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26429)
31009Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172733928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88513Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397618.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG