Name: Thermus caliditerrae DSM 25901
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24641

Type strain:

Species: Thermus caliditerrae

Culture col. no.: DSM 25901, CCTCC 2012061, YIM 77925

Strain history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China <- T.-T. Yu

NCBI tax ID(s): 1330700 (species)

SI-ID 402941

DSM 25901

Section

Thermus caliditerrae DSM 25901 is a thermophilic bacterium that was isolated from geothermally heated sediment with some water.

thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Thermus*
	Species	**Thermus caliditerrae**
	Full Scientific Name (LPSN)	Thermus caliditerrae Ming et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #20870]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20870]

Culture medium

THERMUS MEDIUM (DSMZ Medium 1722)

[Ref.: #20870]

Culture medium growth

[Ref.: #20870]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20870]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20870]			growth	65 °C

[Ref.: #20870]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20870]	Sample type/isolated from	geothermally heated sediment with some water
[Ref.: #20870]	Geographic location (country and/or sea, region)	Yunnan province, Tengchong county, Hydrothermal Explosion area (Shuirebaozhaqu, 24.95014° N 98.43743° E)
[Ref.: #20870]	Country	China
[Ref.: #20870]	Country ISO 3 Code	CHN
[Ref.: #20870]	Continent	Asia
[Ref.: #20870]	Geographic location	24.9501°/98.4374°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC852874 (>99% sequence identity) for Thermus caliditerrae from Microbeatlas

Aquatic Samples	30
Soil Samples
Animal Samples	4
Plant Samples
Total Samples	34

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20870]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20870]	Thermus caliditerrae strain YIM 77925 16S ribosomal RNA gene, partial sequence	KC852874	1545	ENA	1330700 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermus caliditerrae YIM 77925	GCA_021462525	contig	GenBank	1330700 tax ID	*

[Ref.: #20870]

GC-content

65.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermus caliditerrae YIM 77925 NCBI: GCA_021462525.1
[Ref.: #69480]	flagellated	no	98.115	no
[Ref.: #69480]	gram-positive	no	95.628	no
[Ref.: #69480]	anaerobic	no	95.619	no
[Ref.: #69480]	aerobic	yes	73.853	no
[Ref.: #69480]	halophile	no	85.401	no
[Ref.: #69480]	spore-forming	no	92.714	no
[Ref.: #69480]	motile	no	88.363	no
[Ref.: #69480]	glucose-ferment	no	87.172	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	88.266	no

Availability in culture collections External links

[Ref.: #20870]

Culture collection no.

DSM 25901, CCTCC 2012061, YIM 77925

[Ref.: #88483]

SI-ID 402941

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermus thermamylovorans sp. nov., isolated from a hot spring.	Ming H, Zhao ZL, Ji WL, Ding CL, Cheng LJ, Niu MM, Li M, Yi BF, Xia TT, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.003965	2020	*
Phylogeny	Thermus caldilimi sp. nov., a thermophilic bacterium isolated from a geothermal area.	Li MM, Xian WD, Zhang XT, Yin YR, Zhou EM, Ding YP, Liu L, Fang BZ, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-019-01309-0	2019	*
Phylogeny	Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample.	Yu TT, Ming H, Yao JC, Zhou EM, Park DJ, Hozzein WN, Kim CJ, Wadaan MAM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000289	2015	*
Phylogeny	Thermus caliditerrae sp. nov., a novel thermophilic species isolated from a geothermal area.	Ming H, Yin YR, Li S, Nie GX, Yu TT, Zhou EM, Liu L, Dong L, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.056838-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20870

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25901

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88483

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402941.1 )

* These data were automatically processed and therefore are not curated

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Thermus caliditerrae YIM 77925

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