Name: Streptomyces kebangsaanensis SUK 12
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24620

Type strain:

Species: Streptomyces kebangsaanensis

Strain Designation: SUK 12

Culture col. no.: DSM 42048, NRRL B-24860

Strain history: <- N. Mohamad, Universiti Kebangsaan Malaysia; SUK 12 <- N. I. Mohd Sarmin

NCBI tax ID(s): 864058 (species)

SI-ID 404442

DSM 42048

Special Collections

Section

Streptomyces kebangsaanensis SUK 12 is a spore-forming, Gram-positive, ovoid-shaped bacterium that produces antibiotic compounds and was isolated from internal tissue of the stem of Portulaca oleracea L., a Malaysian ethnomedicinal plant.

antibiotic compound production
Gram-positive
ovoid-shaped
spore-forming
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces kebangsaanensis**
	Full Scientific Name (LPSN)	Streptomyces kebangsaanensis Sarmin et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30931]	Gram stain	positive

[Ref.: #30931]	Cell shape	ovoid-shaped

[Ref.: #30931]	Motility	no

[Ref.: #30931]

Pigment production

yes

Multimedia content

[Ref.: #21049]

Caption:

Medium 84 28°C

[Ref.: #21049]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21049]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #21049]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #21049]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #21049]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #21049]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #21049]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #21049]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21049]			growth	28 °C
[Ref.: #30931]			growth	28-37 °C

	pH	Kind of pH		pH
[Ref.: #30931]			growth	5.0-11.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30931]

Ability of spore formation

yes

[Ref.: #21049]

Name of produced compound

tubermycin B

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30931]		NaCl		growth	04-07	%

[Ref.: #30931]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30931]	fructose ChEBI	+	carbon source
[Ref.: #30931]	glucose ChEBI	+	carbon source
[Ref.: #30931]	mannitol ChEBI	+	carbon source
[Ref.: #30931]	myo-inositol ChEBI	+	carbon source
[Ref.: #30931]	rhamnose ChEBI	+	carbon source
[Ref.: #30931]	sucrose ChEBI	+	carbon source
[Ref.: #30931]	xylose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21049]	Sample type/isolated from	internal tissue of the stem of Portulaca oleracea L., a Malaysian ethnomedicinal plant
[Ref.: #21049]	Host species	Portulaca oleracea
[Ref.: #21049]	Geographic location (country and/or sea, region)	Pahang, Nenasi Reserve Forest (2° 53.852' N 103° 25.507' E)
[Ref.: #21049]	Country	Malaysia
[Ref.: #21049]	Country ISO 3 Code	MYS
[Ref.: #21049]	Continent	Asia
[Ref.: #21049]	Geographic location	3.1410°/103.4370°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM449824 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	16
Animal Samples	1
Plant Samples	9
Total Samples	26

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21049]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21049]	Streptomyces kebangsaanensis strain SUK12 16S ribosomal RNA gene, partial sequence	HM449824	1416	GenBank ENA	864058 tax ID

[Ref.: #21049]	GC-content	74 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30931]	GC-content	74 mol%

Availability in culture collections External links

[Ref.: #21049]

Culture collection no.

DSM 42048, NRRL B-24860

[Ref.: #88464]

SI-ID 404442

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces kebangsaanensis sp. nov., an endophytic actinomycete isolated from an ethnomedicinal plant, which produces phenazine-1-carboxylic acid.	Sarmin NIM, Tan GYA, Franco CMM, Edrada-Ebel R, Latip J, Zin NM	Int J Syst Evol Microbiol	10.1099/ijs.0.047878-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21049

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42048

#30931

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27261 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88464

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404442.1 )

#27261

IJSEM 3733 2013 ( DOI 10.1099/ijs.0.047878-0 , PubMed 23645019 )

* These data were automatically processed and therefore are not curated

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