Strain identifier
BacDive ID: 24620
Type strain: 
Species: Streptomyces kebangsaanensis
Strain Designation: SUK 12
Strain history: <- N. Mohamad, Universiti Kebangsaan Malaysia; SUK 12 <- N. I. Mohd Sarmin
NCBI tax ID(s): 864058 (species)
version 8.1 (current version)
General
@ref: 21049
BacDive-ID: 24620
DSM-Number: 42048
keywords: 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, ovoid-shaped, antibiotic compound production
description: Streptomyces kebangsaanensis SUK 12 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from internal tissue of the stem of Portulaca oleracea L., a Malaysian ethnomedicinal plant.
NCBI tax id
- NCBI tax id: 864058
- Matching level: species
strain history
- @ref: 21049
- history: <- N. Mohamad, Universiti Kebangsaan Malaysia; SUK 12 <- N. I. Mohd Sarmin
doi: 10.13145/bacdive24620.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces kebangsaanensis
- full scientific name: Streptomyces kebangsaanensis Sarmin et al. 2013
@ref: 21049
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces kebangsaanensis
full scientific name: Streptomyces kebangsaanensis Sarmin et al. 2013 emend. Nouioui et al. 2018
strain designation: SUK 12
type strain: yes
Morphology
cell morphology
- @ref: 30931
- gram stain: positive
- cell shape: ovoid-shaped
- motility: no
pigmentation
- @ref: 30931
- production: yes
multimedia
- @ref: 21049
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42048.jpg
- caption: Medium 84 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21049 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 21049 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf | |
| 21049 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21049 | positive | growth | 28 | mesophilic |
| 30931 | positive | growth | 28-37 | mesophilic |
culture pH
- @ref: 30931
- ability: positive
- type: growth
- pH: 5.0-11.5
- PH range: alkaliphile
Physiology and metabolism
spore formation
- @ref: 30931
- spore formation: yes
compound production
- @ref: 21049
- compound: tubermycin B
halophily
- @ref: 30931
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 04-07 %
observation
- @ref: 30931
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30931 | 28757 | fructose | + | carbon source |
| 30931 | 17234 | glucose | + | carbon source |
| 30931 | 29864 | mannitol | + | carbon source |
| 30931 | 17268 | myo-inositol | + | carbon source |
| 30931 | 26546 | rhamnose | + | carbon source |
| 30931 | 17992 | sucrose | + | carbon source |
| 30931 | 18222 | xylose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 21049
- sample type: internal tissue of the stem of Portulaca oleracea L., a Malaysian ethnomedicinal plant
- host species: Portulaca oleracea
- geographic location: Pahang, Nenasi Reserve Forest (2° 53.852' N 103° 25.507' E)
- country: Malaysia
- origin.country: MYS
- continent: Asia
- latitude: 3.141
- longitude: 103.437
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Stem (Branch) |
taxonmaps
- @ref: 69479
- File name: preview.99_69698.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_1938;98_48957;99_69698&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: HM449824
- Sequence Identity:
- Total samples: 26
- soil counts: 16
- animal counts: 1
- plant counts: 9
Safety information
risk assessment
- @ref: 21049
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21049
- description: Streptomyces kebangsaanensis strain SUK12 16S ribosomal RNA gene, partial sequence
- accession: HM449824
- length: 1416
- database: ena
- NCBI tax ID: 864058
GC content
| @ref | GC-content | method |
|---|---|---|
| 21049 | 74 | thermal denaturation, midpoint method (Tm) |
| 30931 | 74 |
External links
@ref: 21049
culture collection no.: DSM 42048, NRRL B-24860
straininfo link
- @ref: 88464
- straininfo: 404442
literature
- topic: Phylogeny
- Pubmed-ID: 23645019
- title: Streptomyces kebangsaanensis sp. nov., an endophytic actinomycete isolated from an ethnomedicinal plant, which produces phenazine-1-carboxylic acid.
- authors: Sarmin NIM, Tan GYA, Franco CMM, Edrada-Ebel R, Latip J, Zin NM
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.047878-0
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phenazines/metabolism, *Phylogeny, Plants, Medicinal/*microbiology, Portulaca/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21049 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42048 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42048) | |||
| 30931 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27261 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88464 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404442.1 |