Name: Treponema sp. 37F9HE
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24571

Type strain:

Species: Treponema sp.

Strain Designation: 37F9HE

Culture col. no.: DSM 16789, ATCC 700722, OMZ 838

Strain history: <- C. Wyss, Zuerich; OMZ 838

NCBI tax ID(s): 1539298 (species)

Other strains from Treponema sp.

T. sp. R8, DSM 13955
T. sp. HU3H9A, DSM 16369, ATCC 700764, ...
T. sp. DSM 16787, ATCC 700767, OMZ 806
T. sp. BL3D1, DSM 16788, ATCC 700765, ...

Section

Treponema sp. 37F9HE is an anaerobe, mesophilic bacterium that was isolated from patient with ANUG.

anaerobe
mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Treponemataceae*
	Genus	*Treponema*
	Full Scientific Name (LPSN)	Treponema Schaudinn 1905 (Approved Lists 1980)

	Synonym	Zuelzera
	Synonym	Helmutkoenigia
	Synonym	Leadbettera

Information on morphological and physiological properties Morphology

[Ref.: #20877]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20877]

Culture medium

OMIZ-PAT (DSMZ Medium 1494)

[Ref.: #20877]

Culture medium growth

[Ref.: #20877]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20877]

Culture medium composition

expand / minimize

Name: . OMIZ-PAT Medium (modified) (DSMZ Medium 1494)
Composition:
(NH4)6Mo7O24 x 4 H2O 12.4 g/l
Yeast extract 3.0 g/l
Fe SO4 x 7 H2O 2.78015 g/l
D-Glucose 2.0 g/l
D-Mannose 2.0 g/l
D-Arabinose 2.0 g/l
L-Fucose 2.0 g/l
D-Trehalose 2.0 g/l
D-Sucrose 2.0 g/l
L-Rhamnose 2.0 g/l
NH4Cl 1.6 g/l
Glutathione 1.5366 g/l
Ascorbic acid 1.0 g/l
NaHCO3 1.0 g/l
Ethanol 1.0 g/l
KCl 0.968 g/l
D-Maltose 0.8 g/l
D-glucuronic acid 0.8 g/l
D-Mannitol 0.8 g/l
D-galacturonic acid 0.8 g/l
D-Fructose 0.8 g/l
L-Glutamine 0.68 g/l
L-Histidine 0.62 g/l
NaVO3 0.61 g/l
D 0.56 g/l
Pyruvic acid 0.55 g/l
L-Serine 0.525 g/l
Fumaric acid 0.5 g/l
HCl 0.3646 g/l
L-Cysteine HCl 0.35 g/l
L-Glutamic acid 0.3 g/l
Formic acid 0.3 g/l
ZnSO4 x 7 H2O 0.287 g/l
MgSO4 x 7 H2O 0.25 g/l
DL-carnitine 0.2 g/l
N-Acetylglucosamine 0.2 g/l
Citric acid 0.2 g/l
L-Lysine HCl 0.182 g/l
L-Arginine 0.175 g/l
L-Ornithine HCl 0.17 g/l
L-Phenylalanine 0.165 g/l
CaCl2 x H2O 0.15 g/l
L-Methionine 0.15 g/l
L-Asparagine 0.15 g/l
NaH2PO4 x H2O 0.14 g/l
L-Leucine 0.131 g/l
L-Isoleucine 0.131 g/l
NiSO4 x 6 H2O 0.131 g/l
L-Threonine 0.12 g/l
L-Aspartic acid 0.118 g/l
SnCl2 x 2 H2O 0.118 g/l
L-Valine 0.117 g/l
L-Proline 0.115 g/l
L-Tryptophan 0.102 g/l
Nicotinic acid 0.1 g/l
Folinic acid 0.1 g/l
L-Tyrosine 0.09 g/l
NaOH 0.079994 g/l
Glycine 0.075 g/l
Nicotinamide 0.05 g/l
Folic acid 0.05 g/l
D-(+)-biotin 0.05 g/l
Vitamine B12 0.05 g/l
Choline chloride 0.05 g/l
Myo-inositol 0.05 g/l
L-Alanine 0.045 g/l
Hemin 0.026076 g/l
N-acetylmuramic acid 0.025 g/l
Na2SeO3 0.0173 g/l
MnSO4 x H2O 0.0169 g/l
Riboflavine 0.01 g/l
2-Mercaptoethanesulfonic acid 0.01 g/l
Phenol red 0.01 g/l
Putrescine 2 HCl 0.005 g/l
Pyridoxal hydrochloride 0.005 g/l
Pyridoxal phosphate 0.005 g/l
Calcium D-(+)-pantothenate 0.005 g/l
Thiamine HCl 0.005 g/l
Thiamin pyrophosphate 0.005 g/l
Thymidine 0.0024 g/l
N-(2-acetamido)-2-aminoethanesulfonic acid 0.0018 g/l
Hypoxanthine 0.0014 g/l
Uracil 0.0011 g/l
Flavin adenine dinucleotide 0.001 g/l
ß-nicotinamide adenine dinucleotide 0.001 g/l
Coenzym A 0.001 g/l
CuSO4 0.000789 g/l
Cholesterol
Asialofetuin
2-Mercaptoethanol
Isovaleric acid
Valeric acid
2-Methylbutyric acid
Isobutyric acid
DL-alpha-lipoic acid
Rabbit serum
Distilled water

	Temperatures	Kind of temperature		Temperature
[Ref.: #20877]			growth	35 °C

[Ref.: #20877]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20877]

Oxygen tolerance

anaerobe

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	NAD metabolism	61.11	11 of 18
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	purine metabolism	58.51	55 of 94
[Ref.: #66794]	glutamate and glutamine metabolism	57.14	16 of 28
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	non-pathway related	55.26	21 of 38
[Ref.: #66794]	alanine metabolism	55.17	16 of 29
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
[Ref.: #66794]	threonine metabolism	50	5 of 10
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	coenzyme A metabolism	50	2 of 4
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	citric acid cycle	50	7 of 14
[Ref.: #66794]	oxidative phosphorylation	49.45	45 of 91
[Ref.: #66794]	methionine metabolism	46.15	12 of 26
[Ref.: #66794]	lipid metabolism	45.16	14 of 31
[Ref.: #66794]	tryptophan metabolism	44.74	17 of 38
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	isoprenoid biosynthesis	38.46	10 of 26
[Ref.: #66794]	arginine metabolism	37.5	9 of 24
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	UDP-GlcNAc biosynthesis	33.33	1 of 3
[Ref.: #66794]	flavin biosynthesis	33.33	5 of 15
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	cysteine metabolism	33.33	6 of 18
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	leucine metabolism	30.77	4 of 13
[Ref.: #66794]	urea cycle	30.77	4 of 13
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	glycine metabolism	30	3 of 10
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	histidine metabolism	27.59	8 of 29
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	vitamin B6 metabolism	27.27	3 of 11
[Ref.: #66794]	lysine metabolism	26.19	11 of 42
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	isoleucine metabolism	25	2 of 8
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
[Ref.: #66794]	lipid A biosynthesis	22.22	2 of 9
[Ref.: #66794]	valine metabolism	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	tetrahydrofolate metabolism	21.43	3 of 14
[Ref.: #66794]	tyrosine metabolism	21.43	3 of 14
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20877]	Sample type/isolated from	patient with ANUG
[Ref.: #20877]	Country	Switzerland
[Ref.: #20877]	Country ISO 3 Code	CHE
[Ref.: #20877]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Gingiva

What are isolation sources categories?

Availability in culture collections External links

[Ref.: #20877]

Culture collection no.

DSM 16789, ATCC 700722, OMZ 838

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The impact of smoking different tobacco types on the subgingival microbiome and periodontal health: a pilot study.	Al Kawas S, Al-Marzooq F, Rahman B, Shearston JA, Saad H, Benzina D, Weitzman M	Sci Rep	10.1038/s41598-020-80937-3	2021	*
Genetics	Complete Genome Sequence for Treponema sp. OMZ 838 (ATCC 700772, DSM 16789), Isolated from a Necrotizing Ulcerative Gingivitis Lesion.	Chan Y, Ma AP, Lacap-Bugler DC, Huo YB, Keung Leung W, Leung FC, Watt RM	Genome Announc	10.1128/genomeA.01333-14	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20877

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16789

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

* These data were automatically processed and therefore are not curated

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