Strain identifier
BacDive ID: 24571
Type strain:
Species: Treponema sp.
Strain Designation: 37F9HE
Strain history: <- C. Wyss, Zuerich; OMZ 838
NCBI tax ID(s): 1539298 (species)
version 8.1 (current version)
General
@ref: 20877
BacDive-ID: 24571
DSM-Number: 16789
keywords: Bacteria, anaerobe, mesophilic
description: Treponema sp. 37F9HE is an anaerobe, mesophilic bacterium that was isolated from patient with ANUG.
NCBI tax id
- NCBI tax id: 1539298
- Matching level: species
strain history
- @ref: 20877
- history: <- C. Wyss, Zuerich; OMZ 838
doi: 10.13145/bacdive24571.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Treponemataceae
- genus: Treponema
- species: Treponema sp.
- full scientific name: Treponema Schaudinn 1905 (Approved Lists 1980)
synonyms
@ref synonym 20215 Zuelzera 20215 Helmutkoenigia 20215 Leadbettera
@ref: 20877
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Treponemataceae
genus: Treponema
species: Treponema sp.
full scientific name: Treponema sp.
strain designation: 37F9HE
type strain: no
Morphology
colony morphology
- @ref: 20877
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 20877
- name: OMIZ-PAT (DSMZ Medium 1494)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1494
- composition: Name: . OMIZ-PAT Medium (modified) (DSMZ Medium 1494) Composition: (NH4)6Mo7O24 x 4 H2O 12.4 g/l Yeast extract 3.0 g/l Fe SO4 x 7 H2O 2.78015 g/l D-Glucose 2.0 g/l D-Mannose 2.0 g/l D-Arabinose 2.0 g/l L-Fucose 2.0 g/l D-Trehalose 2.0 g/l D-Sucrose 2.0 g/l L-Rhamnose 2.0 g/l NH4Cl 1.6 g/l Glutathione 1.5366 g/l Ascorbic acid 1.0 g/l NaHCO3 1.0 g/l Ethanol 1.0 g/l KCl 0.968 g/l D-Maltose 0.8 g/l D-glucuronic acid 0.8 g/l D-Mannitol 0.8 g/l D-galacturonic acid 0.8 g/l D-Fructose 0.8 g/l L-Glutamine 0.68 g/l L-Histidine 0.62 g/l NaVO3 0.61 g/l D 0.56 g/l Pyruvic acid 0.55 g/l L-Serine 0.525 g/l Fumaric acid 0.5 g/l HCl 0.3646 g/l L-Cysteine HCl 0.35 g/l L-Glutamic acid 0.3 g/l Formic acid 0.3 g/l ZnSO4 x 7 H2O 0.287 g/l MgSO4 x 7 H2O 0.25 g/l DL-carnitine 0.2 g/l N-Acetylglucosamine 0.2 g/l Citric acid 0.2 g/l L-Lysine HCl 0.182 g/l L-Arginine 0.175 g/l L-Ornithine HCl 0.17 g/l L-Phenylalanine 0.165 g/l CaCl2 x H2O 0.15 g/l L-Methionine 0.15 g/l L-Asparagine 0.15 g/l NaH2PO4 x H2O 0.14 g/l L-Leucine 0.131 g/l L-Isoleucine 0.131 g/l NiSO4 x 6 H2O 0.131 g/l L-Threonine 0.12 g/l L-Aspartic acid 0.118 g/l SnCl2 x 2 H2O 0.118 g/l L-Valine 0.117 g/l L-Proline 0.115 g/l L-Tryptophan 0.102 g/l Nicotinic acid 0.1 g/l Folinic acid 0.1 g/l L-Tyrosine 0.09 g/l NaOH 0.079994 g/l Glycine 0.075 g/l Nicotinamide 0.05 g/l Folic acid 0.05 g/l D-(+)-biotin 0.05 g/l Vitamine B12 0.05 g/l Choline chloride 0.05 g/l Myo-inositol 0.05 g/l L-Alanine 0.045 g/l Hemin 0.026076 g/l N-acetylmuramic acid 0.025 g/l Na2SeO3 0.0173 g/l MnSO4 x H2O 0.0169 g/l Riboflavine 0.01 g/l 2-Mercaptoethanesulfonic acid 0.01 g/l Phenol red 0.01 g/l Putrescine 2 HCl 0.005 g/l Pyridoxal hydrochloride 0.005 g/l Pyridoxal phosphate 0.005 g/l Calcium D-(+)-pantothenate 0.005 g/l Thiamine HCl 0.005 g/l Thiamin pyrophosphate 0.005 g/l Thymidine 0.0024 g/l N-(2-acetamido)-2-aminoethanesulfonic acid 0.0018 g/l Hypoxanthine 0.0014 g/l Uracil 0.0011 g/l Flavin adenine dinucleotide 0.001 g/l ß-nicotinamide adenine dinucleotide 0.001 g/l Coenzym A 0.001 g/l CuSO4 0.000789 g/l Cholesterol Asialofetuin 2-Mercaptoethanol Isovaleric acid Valeric acid 2-Methylbutyric acid Isobutyric acid DL-alpha-lipoic acid Rabbit serum Distilled water
culture temp
- @ref: 20877
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 20877
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 20877
- sample type: patient with ANUG
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | |
#Infection | #Patient | |
#Host Body-Site | #Oral cavity and airways | #Gingiva |
External links
@ref: 20877
culture collection no.: DSM 16789, ATCC 700722, OMZ 838
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | topic2 | mesh |
---|---|---|---|---|---|---|---|---|
Genetics | 25540346 | Complete Genome Sequence for Treponema sp. OMZ 838 (ATCC 700772, DSM 16789), Isolated from a Necrotizing Ulcerative Gingivitis Lesion. | Chan Y, Ma AP, Lacap-Bugler DC, Huo YB, Keung Leung W, Leung FC, Watt RM | Genome Announc | 10.1128/genomeA.01333-14 | 2014 | Phylogeny | |
Phylogeny | 33441919 | The impact of smoking different tobacco types on the subgingival microbiome and periodontal health: a pilot study. | Al Kawas S, Al-Marzooq F, Rahman B, Shearston JA, Saad H, Benzina D, Weitzman M | Sci Rep | 10.1038/s41598-020-80937-3 | 2021 | Pathogenicity | Adolescent, Adult, Bacteria/*classification/*growth & development/isolation & purification, Cigarette Smoking, Dental Plaque/*microbiology, Female, Gingiva/microbiology, Humans, Male, *Microbiota, Middle Aged, Periodontitis/*epidemiology, Periodontium/*microbiology, Pilot Projects, RNA, Ribosomal, 16S/genetics, *Tobacco Smoking, United Arab Emirates/epidemiology, Young Adult |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
20877 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16789 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16789) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |