Name: Rubrobacter bracarensis VF70612_S1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24537

Type strain:

Species: Rubrobacter bracarensis

Strain Designation: VF70612_S1

Culture col. no.: DSM 24908, CECT 7924, JCM 31710

Strain history: CECT 7924 <-- V. Jurado, Inst. Recur. Nat. Agrobiol., IRNAS-CSIC, Spain; VF70612_S1.

NCBI tax ID(s): 1017354 (species)

SI-ID 388332

CECT 7924, DSM 24908, DSM 24098

Special Collections

DSMZ
JCM

Other strains from Rubrobacter bracarensis

Section

Rubrobacter bracarensis VF70612_S1 is a bacterium that was isolated from green biofilm from a biodeteriorated interior wall of a church.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Rubrobacteria*
	Order	*Rubrobacterales*
	Family	*Rubrobacteraceae*
	Genus	*Rubrobacter*
	Species	**Rubrobacter bracarensis**
	Full Scientific Name (LPSN)	Rubrobacter bracarensis Jurado et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #20786]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20786]

Culture medium

TRYPTICASE SOY AGAR NA-MG (DSMZ Medium 1350)

[Ref.: #20786]

Culture medium growth

[Ref.: #20786]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20786]

Culture medium composition

expand / minimize

[Ref.: #20786]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #20786]

Culture medium growth

[Ref.: #20786]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20786]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20786]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20786]	Sample type/isolated from	green biofilm from a biodeteriorated interior wall of a church
[Ref.: #20786]	Geographic location (country and/or sea, region)	Braga District, Barcelos, Vilar de Frades Church
[Ref.: #20786]	Country	Portugal
[Ref.: #20786]	Country ISO 3 Code	PRT
[Ref.: #20786]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Green biofilm covering the biodeteriorated interior walls of Vilar de Frades Church
[Ref.: #67770]	Geographic location (country and/or sea, region)	Braga
[Ref.: #67770]	Country	Portugal
[Ref.: #67770]	Country ISO 3 Code	PRT
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	-
#Engineered	#Built environment	-
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR852390 (>99% sequence identity) for Rubrobacter bracarensis subclade from Microbeatlas

Aquatic Samples	89
Soil Samples	86
Animal Samples	252
Plant Samples	22
Total Samples	449

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20786]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20786]	Rubrobacter bracerensis partial 16S rRNA gene, type strain VFA70612_S1T	HE672086	1441	GenBank ENA	1017354 tax ID
[Ref.: #67770]	Rubrobacter bracarensis partial 16S rRNA gene, type strain VF70612_S1T	FR852390	1456	GenBank ENA	1017354 tax ID

[Ref.: #20786]

GC-content

65.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20786]

Culture collection no.

DSM 24908, CECT 7924, JCM 31710

[Ref.: #88392]

SI-ID 388332

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rubrobacter bracarensis sp. nov., a novel member of the genus Rubrobacter isolated from a biodeteriorated monument.	Jurado V, Miller AZ, Alias-Villegas C, Laiz L, Saiz-Jimenez C	Syst Appl Microbiol	10.1016/j.syapm.2012.04.007	2012	*
Phylogeny	Rubrobacter aplysinae sp. nov., isolated from the marine sponge Aplysina aerophoba.	Kampfer P, Glaeser SP, Busse HJ, Abdelmohsen UR, Hentschel U	Int J Syst Evol Microbiol	10.1099/ijs.0.055152-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20786

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24908

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88392

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID388332.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rubrobacter bracarensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF