Strain identifier

BacDive ID: 24537

Type strain: Yes

Species: Rubrobacter bracarensis

Strain Designation: VF70612_S1

Strain history: CECT 7924 <-- V. Jurado, Inst. Recur. Nat. Agrobiol., IRNAS-CSIC, Spain; VF70612_S1.

NCBI tax ID(s): 1017354 (species)

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General

@ref: 20786

BacDive-ID: 24537

DSM-Number: 24908

keywords: 16S sequence, Bacteria, mesophilic

description: Rubrobacter bracarensis VF70612_S1 is a mesophilic bacterium that was isolated from green biofilm from a biodeteriorated interior wall of a church.

NCBI tax id

  • NCBI tax id: 1017354
  • Matching level: species

strain history

@refhistory
20786<- V. Jurado, Inst. de Recursos Naturales y Agrobiologia, CSIC, Sevilla, Spain; VF70612-S1 <- A. Miller
67770CECT 7924 <-- V. Jurado, Inst. Recur. Nat. Agrobiol., IRNAS-CSIC, Spain; VF70612_S1.

doi: 10.13145/bacdive24537.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Rubrobacteria
  • order: Rubrobacterales
  • family: Rubrobacteraceae
  • genus: Rubrobacter
  • species: Rubrobacter bracarensis
  • full scientific name: Rubrobacter bracarensis Jurado et al. 2013

@ref: 20786

domain: Bacteria

phylum: Actinobacteria

class: Rubrobacteria

order: Rubrobacterales

family: Rubrobacteraceae

genus: Rubrobacter

species: Rubrobacter bracarensis

full scientific name: Rubrobacter bracarensis Jurado et al. 2013 emend. Albuquerque et al. 2014

strain designation: VF70612_S1

type strain: yes

Morphology

colony morphology

  • @ref: 20786
  • incubation period: 8-14 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20786TRYPTICASE SOY AGAR NA-MG (DSMZ Medium 1350)yeshttps://mediadive.dsmz.de/medium/1350Name: TRYPTICASE SOY AGAR NA-MG (DSMZ Medium 1350) Composition: NaCl 30.0 g/l Trypticase soy broth 30.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Distilled water
20786TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20786positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20786green biofilm from a biodeteriorated interior wall of a churchBraga District, Barcelos, Vilar de Frades ChurchPortugalPRTEurope
67770Green biofilm covering the biodeteriorated interior walls of Vilar de Frades ChurchBragaPortugalPRTEurope

isolation source categories

Cat1Cat2
#Engineered#Biodegradation
#Engineered#Built environment
#Environmental#Biofilm

taxonmaps

  • @ref: 69479
  • File name: preview.99_12190.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_408;96_2197;97_7435;98_9161;99_12190&stattab=map
  • Last taxonomy: Rubrobacter bracarensis subclade
  • 16S sequence: FR852390
  • Sequence Identity:
  • Total samples: 449
  • soil counts: 86
  • aquatic counts: 89
  • animal counts: 252
  • plant counts: 22

Safety information

risk assessment

  • @ref: 20786
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20786Rubrobacter bracerensis partial 16S rRNA gene, type strain VFA70612_S1THE6720861441ena1017354
67770Rubrobacter bracarensis partial 16S rRNA gene, type strain VF70612_S1TFR8523901456ena1017354

GC content

  • @ref: 20786
  • GC-content: 65.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20786

culture collection no.: DSM 24908, CECT 7924, JCM 31710

straininfo link

  • @ref: 88392
  • straininfo: 388332

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22776713Rubrobacter bracarensis sp. nov., a novel member of the genus Rubrobacter isolated from a biodeteriorated monument.Jurado V, Miller AZ, Alias-Villegas C, Laiz L, Saiz-Jimenez CSyst Appl Microbiol10.1016/j.syapm.2012.04.0072012Actinobacteria/chemistry/*classification/genetics/*isolation & purification, *Architecture, Biofilms, *Environmental Microbiology, Genes, Bacterial, Molecular Sequence Data, Phylogeny, PortugalGenetics
Phylogeny24170773Rubrobacter aplysinae sp. nov., isolated from the marine sponge Aplysina aerophoba.Kampfer P, Glaeser SP, Busse HJ, Abdelmohsen UR, Hentschel UInt J Syst Evol Microbiol10.1099/ijs.0.055152-02013Actinobacteria/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lysine/chemistry, Molecular Sequence Data, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20786Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24908Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24908)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88392Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID388332.1